prot_H-paniculata_contig9237.17029.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig9237.17029.1
Unique Nameprot_H-paniculata_contig9237.17029.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length124
Homology
BLAST of mRNA_H-paniculata_contig9237.17029.1 vs. uniprot
Match: D8LDE8_ECTSI (RNA pseudouridylate synthase domain-containing protein (C-terminal) RNA pseudouridylate synthase dom n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDE8_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 2.520e-29
Identity = 76/172 (44.19%), Postives = 91/172 (52.91%), Query Frame = 0
Query:    1 RNAWLTVECTEGKNRQIRKICKYLCLTVNRLARVRFGPFTLGKVRAGGVARLEVKEAFLKKLDNGTAGAGGRL------------------DGMGRVLRAGR------AAPGPG-------------------------------------AGVRIRKGVGAPASRGDMLTR 111
            RNAWLT+ECTEGKNRQIRKICKYLCLTVNRLAR R+GPF+LGKVRAGGVA +E+ +AF+++L++G    GG                    +GM R + AG       ++PG G                                      G RIRKGVGAP SRGD   R
Sbjct:  311 RNAWLTIECTEGKNRQIRKICKYLCLTVNRLARTRYGPFSLGKVRAGGVAAVEIPKAFMRRLEDGGGSPGGAXXXXXXXXXXXXXXXXXXXNGMRREMEAGGMKVSEVSSPGTGLSNTVGGGRDTGDRAGSSGGRHWGGGFRGAGRSWGEKGGPRIRKGVGAPMSRGDNSAR 482          
BLAST of mRNA_H-paniculata_contig9237.17029.1 vs. uniprot
Match: A0A6H5J790_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J790_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 3.220e-25
Identity = 73/170 (42.94%), Postives = 87/170 (51.18%), Query Frame = 0
Query:    1 RNAWLTVECTEGKNRQIRKICKYLCLTVNRLARVRFGPFTLGKVRAGGVARLEVKEAFLKKLDNGTAGAGG-----------RL-----DGMGRVLRAGR------AAPGPG-------------------------------------AGVRIRKGVGAPASRGDMLTR 111
            RNAWLT+ECTEGK      ICKYLCLTVNRLAR  +GPF+LGKVRAGGVA +E+ +AF+++L++G    GG           RL     +GM R L AGR      ++PG G                                      G RIRKGVGAP SRGD   R
Sbjct:   30 RNAWLTIECTEGK------ICKYLCLTVNRLARTGYGPFSLGKVRAGGVAAVEIPKAFMRRLEDGGGSPGGAXXXXXGTSGRRLGPGPGNGMRRELEAGRMRVSEVSSPGGGNSSTVGGGRDTDDRAISSGGRHWGDGFRGAGRSWGGKGGPRIRKGVGAPMSRGDNSAR 193          
BLAST of mRNA_H-paniculata_contig9237.17029.1 vs. uniprot
Match: A0A6G6WY02_9HYPH (Pseudouridine synthase n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A6G6WY02_9HYPH)

HSP 1 Score: 68.6 bits (166), Expect = 2.680e-11
Identity = 29/54 (53.70%), Postives = 40/54 (74.07%), Query Frame = 0
Query:    2 NAWLTVECTEGKNRQIRKICKYLCLTVNRLARVRFGPFTLGKVRAGGVARLEVK 55
            NAWL +   EGKNR+++KIC++L LTVNRL R+ FGPF LG +  GG++ +  K
Sbjct:  186 NAWLNIAIREGKNREVKKICEHLGLTVNRLIRIAFGPFQLGDLERGGISEVPAK 239          
BLAST of mRNA_H-paniculata_contig9237.17029.1 vs. uniprot
Match: A0A2D5XHZ2_9PROT (Uncharacterized protein (Fragment) n=1 Tax=Magnetovibrio sp. TaxID=2024836 RepID=A0A2D5XHZ2_9PROT)

HSP 1 Score: 65.1 bits (157), Expect = 4.040e-11
Identity = 29/54 (53.70%), Postives = 40/54 (74.07%), Query Frame = 0
Query:    2 NAWLTVECTEGKNRQIRKICKYLCLTVNRLARVRFGPFTLGKVRAGGVARLEVK 55
            NAWLTV   EG+NR++RK+ +YL L VNRL R+ +GPF LG++  G +AR+  K
Sbjct:   37 NAWLTVSLKEGRNREVRKVMEYLGLQVNRLIRIAYGPFQLGRLGRGQLARVPAK 90          
BLAST of mRNA_H-paniculata_contig9237.17029.1 vs. uniprot
Match: A0A2E9B7Q8_9HYPH (Pseudouridine synthase n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A2E9B7Q8_9HYPH)

HSP 1 Score: 66.6 bits (161), Expect = 1.060e-10
Identity = 31/63 (49.21%), Postives = 45/63 (71.43%), Query Frame = 0
Query:    2 NAWLTVECTEGKNRQIRKICKYLCLTVNRLARVRFGPFTLGKVRAGGVARLEVKEA--FLKKL 62
            N+WLT+E  EGKNR++RKI ++L + +NRL R++FGPF LG+++ G    L  KE    LKK+
Sbjct:  184 NSWLTIEIAEGKNREVRKIFEHLDIQINRLIRIKFGPFELGQIKKGEFIELNKKEVPPKLKKI 246          
BLAST of mRNA_H-paniculata_contig9237.17029.1 vs. uniprot
Match: A0A2E5HCX0_9HYPH (Pseudouridine synthase n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2E5HCX0_9HYPH)

HSP 1 Score: 66.6 bits (161), Expect = 1.210e-10
Identity = 28/54 (51.85%), Postives = 38/54 (70.37%), Query Frame = 0
Query:    2 NAWLTVECTEGKNRQIRKICKYLCLTVNRLARVRFGPFTLGKVRAGGVARLEVK 55
            N WL +E +EGKNR+IRKIC+Y  L +NRL R +FGPF LG ++ G    ++ K
Sbjct:  196 NTWLQIEISEGKNREIRKICQYFNLQINRLIRTKFGPFELGNIQKGHFVEIDYK 249          
BLAST of mRNA_H-paniculata_contig9237.17029.1 vs. uniprot
Match: A0A3M0C2Q2_9PROT (Pseudouridine synthase n=2 Tax=Eilatimonas milleporae TaxID=911205 RepID=A0A3M0C2Q2_9PROT)

HSP 1 Score: 66.6 bits (161), Expect = 1.890e-10
Identity = 30/55 (54.55%), Postives = 43/55 (78.18%), Query Frame = 0
Query:    2 NAWLTVECTEGKNRQIRKICKYLCLTVNRLARVRFGPFTLGKVRAGGVARLEVKE 56
            NAWLTV   EGKNR++R++ ++L L+VNRL RV +GPF+LG + AGG A++  K+
Sbjct:  200 NAWLTVAIREGKNREVRRVMEHLGLSVNRLIRVDYGPFSLGSLPAGGTAQVPEKQ 254          
BLAST of mRNA_H-paniculata_contig9237.17029.1 vs. uniprot
Match: A0A357G0I2_9PROT (Pseudouridine synthase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A357G0I2_9PROT)

HSP 1 Score: 65.9 bits (159), Expect = 2.010e-10
Identity = 35/59 (59.32%), Postives = 42/59 (71.19%), Query Frame = 0
Query:    2 NAWLTVECTEGKNRQIRKICKYLCLTVNRLARVRFGPFTLGKVRAGGVARLEVKEAFLK 60
            NAWLTV  TEGKNR+IR++ + L L VNRL RV +G F LGK+  G V   EVKEA +K
Sbjct:  181 NAWLTVTLTEGKNREIRRVMEALDLRVNRLIRVSYGSFMLGKIPEGAVE--EVKEAVMK 237          
BLAST of mRNA_H-paniculata_contig9237.17029.1 vs. uniprot
Match: A0A3M0XZB8_9PROT (Pseudouridine synthase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3M0XZB8_9PROT)

HSP 1 Score: 66.2 bits (160), Expect = 2.300e-10
Identity = 31/54 (57.41%), Postives = 41/54 (75.93%), Query Frame = 0
Query:    2 NAWLTVECTEGKNRQIRKICKYLCLTVNRLARVRFGPFTLGKVRAGGVARLEVK 55
            NAWL+V   EGKNR+IR++ ++L LTVNRL RV +GPF LG++R G VA +  K
Sbjct:  183 NAWLSVALKEGKNREIRRVMEHLGLTVNRLIRVAYGPFQLGRLRPGQVAEVPAK 236          
BLAST of mRNA_H-paniculata_contig9237.17029.1 vs. uniprot
Match: A0A1M3DY66_9PROT (Pseudouridine synthase n=1 Tax=Alphaproteobacteria bacterium 43-37 TaxID=1895707 RepID=A0A1M3DY66_9PROT)

HSP 1 Score: 65.1 bits (157), Expect = 3.640e-10
Identity = 29/54 (53.70%), Postives = 40/54 (74.07%), Query Frame = 0
Query:    2 NAWLTVECTEGKNRQIRKICKYLCLTVNRLARVRFGPFTLGKVRAGGVARLEVK 55
            NAW+  + TEGKNR+IR+IC+++ LTVNRL RV +GPF LG +  G V  + +K
Sbjct:  175 NAWVQFKLTEGKNREIRRICEHIGLTVNRLIRVSYGPFVLGNLGTGSVQSVPLK 228          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9237.17029.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDE8_ECTSI2.520e-2944.19RNA pseudouridylate synthase domain-containing pro... [more]
A0A6H5J790_9PHAE3.220e-2542.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6G6WY02_9HYPH2.680e-1153.70Pseudouridine synthase n=2 Tax=Hyphomicrobiales Ta... [more]
A0A2D5XHZ2_9PROT4.040e-1153.70Uncharacterized protein (Fragment) n=1 Tax=Magneto... [more]
A0A2E9B7Q8_9HYPH1.060e-1049.21Pseudouridine synthase n=2 Tax=Hyphomicrobiales Ta... [more]
A0A2E5HCX0_9HYPH1.210e-1051.85Pseudouridine synthase n=3 Tax=Alphaproteobacteria... [more]
A0A3M0C2Q2_9PROT1.890e-1054.55Pseudouridine synthase n=2 Tax=Eilatimonas millepo... [more]
A0A357G0I2_9PROT2.010e-1059.32Pseudouridine synthase n=1 Tax=Rhodospirillaceae b... [more]
A0A3M0XZB8_9PROT2.300e-1057.41Pseudouridine synthase n=1 Tax=Alphaproteobacteria... [more]
A0A1M3DY66_9PROT3.640e-1053.70Pseudouridine synthase n=1 Tax=Alphaproteobacteria... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR042092Pseudouridine synthase, RsuA/RluB/E/F, catalytic domainGENE3D3.30.70.1560coord: 1..42
e-value: 2.5E-10
score: 42.5
NoneNo IPR availablePANTHERPTHR21600:SF2RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE Bcoord: 2..57
NoneNo IPR availablePANTHERPTHR21600RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE Bcoord: 2..57
IPR020103Pseudouridine synthase, catalytic domain superfamilySUPERFAMILY55120Pseudouridine synthasecoord: 3..49

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9237contigH-paniculata_contig9237:2619..4009 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9237.17029.1mRNA_H-paniculata_contig9237.17029.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig9237 2619..4009 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig9237.17029.1 ID=prot_H-paniculata_contig9237.17029.1|Name=mRNA_H-paniculata_contig9237.17029.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=124bp
RNAWLTVECTEGKNRQIRKICKYLCLTVNRLARVRFGPFTLGKVRAGGVA
RLEVKEAFLKKLDNGTAGAGGRLDGMGRVLRAGRAAPGPGAGVRIRKGVG
APASRGDMLTRSSRRDSGGEGQAA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR042092PsdUridine_s_RsuA/RluB/E/F_cat
IPR020103PsdUridine_synth_cat_dom_sf