Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9183.16990.1 vs. uniprot
Analysis Date: 2022-09-16 ( Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
| Match Name | E-value | Identity | Description | |
|---|
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR002885 | Pentatricopeptide repeat | PFAM | PF13041 | PPR_2 | coord: 360..408
e-value: 4.4E-12
score: 46.0
coord: 290..337
e-value: 1.3E-11
score: 44.5
coord: 465..514
e-value: 2.6E-12
score: 46.7
coord: 224..269
e-value: 2.8E-11
score: 43.4 |
| IPR002885 | Pentatricopeptide repeat | PFAM | PF01535 | PPR | coord: 433..462
e-value: 0.042
score: 14.1 |
| IPR002885 | Pentatricopeptide repeat | PFAM | PF13812 | PPR_3 | coord: 524..584
e-value: 1.5E-12
score: 47.4 |
| IPR002885 | Pentatricopeptide repeat | TIGRFAM | TIGR00756 | TIGR00756 | coord: 503..537
e-value: 2.9E-7
score: 28.2
coord: 258..292
e-value: 9.6E-8
score: 29.8
coord: 328..362
e-value: 1.1E-5
score: 23.2
coord: 468..502
e-value: 5.2E-8
score: 30.6
coord: 538..572
e-value: 2.3E-6
score: 25.4
coord: 573..607
e-value: 6.6E-8
score: 30.3
coord: 363..396
e-value: 6.1E-10
score: 36.7
coord: 399..431
e-value: 4.7E-6
score: 24.4
coord: 293..327
e-value: 7.8E-5
score: 20.6
coord: 224..257
e-value: 2.5E-6
score: 25.3 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 221..255
score: 10.819 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 396..430
score: 11.97 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 361..395
score: 13.844 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 536..570
score: 11.619 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 326..360
score: 11.038 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 256..290
score: 12.441 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 291..325
score: 10.676 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 431..465
score: 9.734 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 466..500
score: 12.299 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 501..535
score: 12.112 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 571..605
score: 12.057 |
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | | coord: 511..620
e-value: 2.6E-34
score: 120.1
coord: 406..510
e-value: 8.6E-34
score: 118.5
coord: 305..405
e-value: 7.3E-34
score: 118.7
coord: 155..304
e-value: 3.4E-31
score: 110.0 |
| None | No IPR available | PANTHER | PTHR46128 | FAMILY NOT NAMED | coord: 312..467
coord: 223..353
coord: 355..502
coord: 462..614 |
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >prot_H-paniculata_contig9183.16990.1 ID=prot_H-paniculata_contig9183.16990.1|Name=mRNA_H-paniculata_contig9183.16990.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=634bp
MTSNFVTHAAKNSAHAIRCSTSRLPNAVGPARLWQAGMSSGSWSDEYAGE
KAGSTELPEASRKHTASPSFPAEPSRKVSGRLRNESLDAPVDKSSGQSRV
QYRWRKVEDMGDRGRTSNLQHTKERSMGSKKTGQGFRRPRVVGNGYYESL
PKDTGTNWAAIRRQREDSERGPGARKSRSPTARQWLYIGQLSEAARNSDW
EAADEVLRNAVACPDSASVVSTRMYNLALNVLANCKKWEKALAVLDTMRE
NGVNPNVYTYNTAIKACANGGAWKLALDLLQRMQKEGVVPDVVSYNTAMK
ACGDKLQWQHALALLRQMPAEGLAPDVYTYNTAIKACGDGGEWERALNLL
GKMDMEKVMPDVVTYNTAIGACAKCGQWEKALELLAQMRAEGFAPDGRSY
NLTIRALGKGGQWEEALEMLTSMEGEGVPPSIISYNAAIAACGEGGQWQR
AIGLLPQMRGANVIPNVVSYSAVITAFGKGGQWQRALDMLSEMEAQGVTP
DVVSFNAVITACANCGQWEKGLDVLREIEAAGLEPNVVSYNAAMKACEDC
GEGEHAVDVLRQMQEKGIAPNVVSYSYAVAACGSEGKWDEALDVLRQMRA
DGVVPNELGYSTALDGCSNWWVPGERDEPLQQE* back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002885 | Pentatricopeptide_repeat |
| IPR011990 | TPR-like_helical_dom_sf |
|