prot_H-paniculata_contig8971.16827.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig8971.16827.1
Unique Nameprot_H-paniculata_contig8971.16827.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length217
Homology
BLAST of mRNA_H-paniculata_contig8971.16827.1 vs. uniprot
Match: A0A6H5LCJ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCJ5_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 8.160e-48
Identity = 84/158 (53.16%), Postives = 117/158 (74.05%), Query Frame = 0
Query:   52 TSLLSMRQGGSXXXXGGQLPIQIRLLATLPYLMPLLDGIEEGKNLFRVLPELKSVVYTVLAPPLALWDNVPFLPLVTFILLTIIAREQNTSRFVRFNIQQAILVDVLSIVLGLFGSGLGLIVPDGGTEVVTNFSFYCLVAAVAYATTENVRGRVPNQV 209
            T+LLSM+  G     G    ++ R L T+ YL+P+LDG++ G+++F  +P L S+V+ VLAP LA+WDNVPF+PLV FI+L +  R Q+TSRF+RFN+QQAILVD+L++VLGL G+  G + P+G  + VTNF+FYCLV AVAYA  E  RG++ NQ+
Sbjct:  137 TTLLSMKASGQGGEKGES--VRNRALGTVVYLLPMLDGLDCGRDVFHAVPMLGSLVHGVLAPALAIWDNVPFMPLVMFIILQVSVRRQDTSRFIRFNVQQAILVDILTVVLGLLGTAAGYVAPEG-EQFVTNFAFYCLVGAVAYAVAETARGKMANQI 291          
BLAST of mRNA_H-paniculata_contig8971.16827.1 vs. uniprot
Match: D7G3C5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3C5_ECTSI)

HSP 1 Score: 162 bits (409), Expect = 3.550e-47
Identity = 77/138 (55.80%), Postives = 108/138 (78.26%), Query Frame = 0
Query:   72 IQIRLLATLPYLMPLLDGIEEGKNLFRVLPELKSVVYTVLAPPLALWDNVPFLPLVTFILLTIIAREQNTSRFVRFNIQQAILVDVLSIVLGLFGSGLGLIVPDGGTEVVTNFSFYCLVAAVAYATTENVRGRVPNQV 209
            ++ R L T+ YL+P+LDG++ G+++F  +P L S+V+ VLAP LA+WDNVPF+PLV FI+L +  R Q+TSRF+RFN+QQAILVD+L++VLGL G+  G + P+G  + VTNF+FYCLV AVAYA  E  RG++ NQ+
Sbjct:   14 VRNRALGTVVYLLPMLDGLDCGRDVFHAVPMLGSLVHGVLAPALAIWDNVPFMPLVMFIILQVSVRRQDTSRFIRFNVQQAILVDILTVVLGLLGTAAGYVAPEG-EQFVTNFAFYCLVGAVAYAVAETARGKMANQI 150          
BLAST of mRNA_H-paniculata_contig8971.16827.1 vs. uniprot
Match: A0A835YUZ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUZ7_9STRA)

HSP 1 Score: 124 bits (312), Expect = 7.440e-32
Identity = 61/139 (43.88%), Postives = 89/139 (64.03%), Query Frame = 0
Query:   71 PIQIRLLATLPYLMPLLDGIEEGKNLFRVLPELKSVVYTVLAPPLALWDNVPFLPLVTFILLTIIAREQNTSRFVRFNIQQAILVDVLSIVLGLFGSGLGLIVPDGGTEVVTNFSFYCLVAAVAYATTENVRGRVPNQV 209
            P + RLLA  PY++P+LDG+  G+N++  +P +   VY VL P LA+W+ VPFL    F+  T  AR    SR VRF++QQAIL+D+  IVLGL  +    + P GG +V     FY L++AVAY+   N++G+ PN++
Sbjct:   72 PFEARLLACFPYILPVLDGVGSGRNVYAAVPAVGEAVYGVLGPALAIWNGVPFLGFGVFLAFTFAARNTELSRLVRFSLQQAILIDIALIVLGLLENVTKAVAP-GGADVFATLQFYILISAVAYSLVSNLQGKEPNEI 209          
BLAST of mRNA_H-paniculata_contig8971.16827.1 vs. uniprot
Match: A0A5J4YN77_PORPP (Tic20 family protein Ycf60 n=2 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YN77_PORPP)

HSP 1 Score: 102 bits (253), Expect = 6.180e-23
Identity = 67/145 (46.21%), Postives = 88/145 (60.69%), Query Frame = 0
Query:   67 GGQLPIQI-RLLATLPYLMPLLDGIEEGKNLFRVLPELKSVVYTVLAPPLALWDNVPFLPLVTFILLTI-IAREQNTSRFVRFNIQQAILVDVLSIVLGLFGSGLGLIVPDGGTEVVTNFSFYCLVAAVAYATTENVRGRVPNQV 209
            GG  P  I R+L TLPYL+PLLD +  GK +F  +P   +VV   L P L ++   PFL    F+ L I + R QN  RF+RFN QQAIL+D+L+I+  LF +GLG   P    E V N  FY LVA V YAT  N++G  P+++
Sbjct:   85 GGGKPGPIDRVLGTLPYLVPLLDSLVYGKYVFEKVP-YSTVVLGPLVPLLEVYRGTPFLAFGIFLALFILVVRNQNVPRFIRFNTQQAILLDILTIIPNLF-NGLGSRAPAVIVEGVNNTVFYGLVACVIYATISNLQGEYPDKI 227          
BLAST of mRNA_H-paniculata_contig8971.16827.1 vs. uniprot
Match: A0A7S2ZG79_9RHOD (Tic20 family protein Ycf60 n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZG79_9RHOD)

HSP 1 Score: 100 bits (250), Expect = 7.600e-23
Identity = 55/136 (40.44%), Postives = 82/136 (60.29%), Query Frame = 0
Query:   75 RLLATLPYLMPLLDGIEEGKNLFRVLPELKSVVYTVLAPPLALWDNVPFLPLVTFI-LLTIIAREQNTSRFVRFNIQQAILVDVLSIVLGLFGSGLGLIVPDGGTEVVTNFSFYCLVAAVAYATTENVRGRVPNQV 209
            R  + LPY +PLLD ++ G  LF+  P  K +V   LAP  A++  +PFL L  F  +  ++ R  N +RF+R+N QQAI++D++ I+  LFG G    +P    E   N  FY ++AAV YA  EN+RG +PN++
Sbjct:   57 RFFSILPYFLPLLDSLQYGSYLFQKFPVFKELVLYPLAPFYAIYRGIPFLDLAIFFGVFFLVVRNTNINRFIRYNAQQAIMLDLILIIPALFG-GAAAQMPRFIAETGANTVFYSILAAVGYAVIENIRGELPNKI 191          
BLAST of mRNA_H-paniculata_contig8971.16827.1 vs. uniprot
Match: A0A7S4N5C0_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N5C0_9STRA)

HSP 1 Score: 100 bits (250), Expect = 1.890e-22
Identity = 61/157 (38.85%), Postives = 92/157 (58.60%), Query Frame = 0
Query:   54 LLSMRQGGSXXXXGGQLPIQIRLLATLPYLMPLLDGIEEGKNLFRVLPELKSVVYTVLAPPLALWDNVPFLPLVTFILLTIIAREQNTSRFVRFNIQQAILVDVLSIVLGLFGSGL-GLIVPDGGTEVVTNFSFYCLVAAVAYATTENVRGRVPNQV 209
            LL+M+  G      G +  Q R+ + +PYL+PL DG   GK +F   P L++V    +AP     D+VPFL L+ F++L++  R  + +R VRFN QQAILVD+  I   L GSG+ G+ +P       +NF +Y + A V Y+   N+RG+ P+Q+
Sbjct:   80 LLTMKMWGDE----GDIVGQDRIKSCIPYLLPLADGHHFGKYIFLNFPALRAVDEVTIAPLAHFLDSVPFLSLIVFLVLSLGTRNSDMARGVRFNAQQAILVDIALIFPELIGSGMDGVAMPTVLMASASNFVWYFMTACVGYSVVNNLRGKKPDQI 232          
BLAST of mRNA_H-paniculata_contig8971.16827.1 vs. uniprot
Match: A0A7S4ES88_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4ES88_CHRCT)

HSP 1 Score: 95.1 bits (235), Expect = 1.750e-20
Identity = 58/141 (41.13%), Postives = 85/141 (60.28%), Query Frame = 0
Query:   69 QLPIQIRLLATLPYLMPLLDGIEEGKNLFRVLPELKSVVYTVLAPPLALWDNVPFLPLVTFILLTIIAREQNTSRFVRFNIQQAILVDVLSIVLGLFGSGLGLIVPDGGTEVVTNFSFYCLVAAVAYATTENVRGRVPNQV 209
            + P   R+LATLPY++P +DG   G  +++ +P + ++      P +A ++++PF  LV FI +++  R  N SRFVRFNIQQA+L+D+  IV GLFG  L    P     + TNF FY  V  V YA   N +G+ P+QV
Sbjct:   69 EAPALERVLATLPYVLPAIDGFAYGLYVYQNVPPIGAIAGAAF-PFVASFESIPFGGLVFFIGMSLFTRNPNLSRFVRFNIQQALLLDIALIVPGLFGP-LTKTFPVELQILGTNFIFYAWVLVVGYALFSNAQGKAPDQV 207          
BLAST of mRNA_H-paniculata_contig8971.16827.1 vs. uniprot
Match: A0A7S3WM08_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3WM08_9SPIT)

HSP 1 Score: 94.7 bits (234), Expect = 2.850e-20
Identity = 57/136 (41.91%), Postives = 85/136 (62.50%), Query Frame = 0
Query:   75 RLLATLPYLMPLLDGIEEGKNLFRVLPELKSVVYTVLAPPLALWDNVPFLPLVTFILLTIIAREQN-TSRFVRFNIQQAILVDVLSIVLGLFGSGLGLIVPDGGTEVVTNFSFYCLVAAVAYATTENVRGRVPNQV 209
            R+ ATLPY +P +DG + G  +F  +P       TVL P +  ++++PF  ++TFI L++  R  +  SRFVRFNIQQA+++D+L IV  LF S  G I P     + +NF FY +   V+YA   NV+G++P+QV
Sbjct:   81 RVFATLPYFLPFIDGFQYGIYVFNNVPGGLEFAKTVL-PFVIAFNSLPFAGIITFIGLSVFTRPSSGLSRFVRFNIQQALVLDILLIVPSLFSSLSGAI-PSSVAIIGSNFVFYVMALVVSYALVSNVQGKLPDQV 214          
BLAST of mRNA_H-paniculata_contig8971.16827.1 vs. uniprot
Match: R1BZE0_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BZE0_EMIHU)

HSP 1 Score: 92.4 bits (228), Expect = 4.160e-20
Identity = 56/143 (39.16%), Postives = 83/143 (58.04%), Query Frame = 0
Query:   68 GQLPIQIRLLATLPYLMPLLDGIEEGKNLFRVLPELKSVVYTVLAPPLALWDNVPFLPLVTFILLTIIAR-EQNTSRFVRFNIQQAILVDVLSIVLGLFGSGLGLIVPDGGTEVVTNFSFYCLVAAVAYATTENVRGRVPNQV 209
            G+ P   R+ ATLPY++P LDG + G  +F  +P        VL P +  ++++PF  ++ FI L+   R +   SRFVRFNIQQA+++D+L I+  LF    G+ VP     + +NF FY +   V YA   N RG +P+QV
Sbjct:    3 GEPPAVERVFATLPYVLPFLDGFQYGLYVFNNVPGGVGFAEAVL-PLVVAFNSLPFSGIIFFIGLSFFTRPDSGLSRFVRFNIQQALVLDILLIIPSLFSGAAGM-VPSSVAILGSNFVFYTMALVVTYALYSNARGELPDQV 143          
BLAST of mRNA_H-paniculata_contig8971.16827.1 vs. uniprot
Match: R1DDZ4_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DDZ4_EMIHU)

HSP 1 Score: 94.0 bits (232), Expect = 4.620e-20
Identity = 57/143 (39.86%), Postives = 84/143 (58.74%), Query Frame = 0
Query:   68 GQLPIQIRLLATLPYLMPLLDGIEEGKNLFRVLPELKSVVYTVLAPPLALWDNVPFLPLVTFILLTIIAR-EQNTSRFVRFNIQQAILVDVLSIVLGLFGSGLGLIVPDGGTEVVTNFSFYCLVAAVAYATTENVRGRVPNQV 209
            G+ P   R+ ATLPY++P LDG + G  +F  +P   S    VL P +  ++++PF  ++ FI L+   R +   SRFVRFNIQQA+++D+L I+  LF    G+ VP     + +NF FY +   V YA   N RG +P+QV
Sbjct:   65 GEPPAVERVFATLPYVLPFLDGFQYGLYVFNNVPGGVSFAEAVL-PLVVAFNSLPFSGIIFFIGLSFFTRPDSGLSRFVRFNIQQALVLDILLIIPSLFSGAAGM-VPSSVAILGSNFVFYTMALVVTYALYSNARGELPDQV 205          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8971.16827.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LCJ5_9PHAE8.160e-4853.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3C5_ECTSI3.550e-4755.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YUZ7_9STRA7.440e-3243.88Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A5J4YN77_PORPP6.180e-2346.21Tic20 family protein Ycf60 n=2 Tax=Porphyridium pu... [more]
A0A7S2ZG79_9RHOD7.600e-2340.44Tic20 family protein Ycf60 n=2 Tax=Rhodosorus mari... [more]
A0A7S4N5C0_9STRA1.890e-2238.85Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S4ES88_CHRCT1.750e-2041.13Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S3WM08_9SPIT2.850e-2041.91Hypothetical protein n=1 Tax=Strombidinopsis acumi... [more]
R1BZE0_EMIHU4.160e-2039.16Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
R1DDZ4_EMIHU4.620e-2039.86Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005691Chloroplast protein import component Tic20PFAMPF16166TIC20coord: 75..163
e-value: 8.1E-12
score: 45.3
IPR005691Chloroplast protein import component Tic20PANTHERPTHR33510FAMILY NOT NAMEDcoord: 34..207
NoneNo IPR availablePANTHERPTHR33510:SF5PROTEIN TIC 20-II, CHLOROPLASTICcoord: 34..207
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 180..198
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 153..174
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 106..132
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..105
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 199..217
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 175..179
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 133..152
NoneNo IPR availableTMHMMTMhelixcoord: 110..132
NoneNo IPR availableTMHMMTMhelixcoord: 152..174
NoneNo IPR availableTMHMMTMhelixcoord: 180..197

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8971contigH-paniculata_contig8971:1944..3239 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8971.16827.1mRNA_H-paniculata_contig8971.16827.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig8971 1944..3239 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig8971.16827.1 ID=prot_H-paniculata_contig8971.16827.1|Name=mRNA_H-paniculata_contig8971.16827.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=217bp
GTVFPHLHSSAWCQRPPPLLSQLSGRSNHHHHHQQQQQQQRLRPRGTRNS
RTSLLSMRQGGSGGAGGGQLPIQIRLLATLPYLMPLLDGIEEGKNLFRVL
PELKSVVYTVLAPPLALWDNVPFLPLVTFILLTIIAREQNTSRFVRFNIQ
QAILVDVLSIVLGLFGSGLGLIVPDGGTEVVTNFSFYCLVAAVAYATTEN
VRGRVPNQVKEKNGKIK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005691Tic20