prot_H-paniculata_contig8918.16795.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig8918.16795.1
Unique Name	prot_H-paniculata_contig8918.16795.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	272

Homology

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BLAST of mRNA_H-paniculata_contig8918.16795.1 vs. uniprot
Match: D7G2Q3_ECTSI (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2Q3_ECTSI)

HSP 1 Score: 156 bits (394), Expect = 2.560e-42
Identity = 77/84 (91.67%), Postives = 81/84 (96.43%), Query Frame = 0

Query:  121 MLHVSNLTRNVTADHLKEMFSSYGKVTSVDLAVDKRVNLPKGYAFVEFVDRTEAEQAQLYLDGGQLDGNKIKVAFILVTKKRRQ 204
            MLHVSNLTRNV ADHLKE+F SYGKVTSVDLAVDKRVNLPKGYAFVEFV+R EAEQAQLYLDGGQLDGN+IKVAF+LVTKKRRQ
Sbjct:    1 MLHVSNLTRNVKADHLKEIFGSYGKVTSVDLAVDKRVNLPKGYAFVEFVERAEAEQAQLYLDGGQLDGNRIKVAFVLVTKKRRQ 84

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BLAST of mRNA_H-paniculata_contig8918.16795.1 vs. uniprot
Match: A0A7S2XYG7_9STRA (Hypothetical protein (Fragment) n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYG7_9STRA)

HSP 1 Score: 125 bits (315), Expect = 4.150e-31
Identity = 65/93 (69.89%), Postives = 77/93 (82.80%), Query Frame = 0

Query:  117 SPAS-MLHVSNLTRNVTADHLKEMFSSYGKVTSVDLAVDKRVNLPKGYAFVEFVDRTEAEQAQLYLDGGQLDGNKIKVAFILVTKKRRQSSSP 208
            SP S MLHV+NLTRNV  +HL+E+F +YGKV  V+L VD+RVNLPKGYAFVEF  R +AEQAQLY+DGGQLDGN +KVAFILV  KRR+ + P
Sbjct:   83 SPESTMLHVANLTRNVKREHLEEIFGTYGKVKKVELVVDRRVNLPKGYAFVEFDKRVDAEQAQLYMDGGQLDGNVLKVAFILV--KRRKPAVP 173

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BLAST of mRNA_H-paniculata_contig8918.16795.1 vs. uniprot
Match: A0A835YNB5_9STRA (RRM domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNB5_9STRA)

HSP 1 Score: 117 bits (292), Expect = 5.130e-30
Identity = 55/75 (73.33%), Postives = 65/75 (86.67%), Query Frame = 0

Query:  121 MLHVSNLTRNVTADHLKEMFSSYGKVTSVDLAVDKRVNLPKGYAFVEFVDRTEAEQAQLYLDGGQLDGNKIKVAF 195
            +LHVSNLTRNV A HL+E+F  YG V  V+LA+DK++ LPKGYAFVEF +RT+AEQAQLYLDGGQLDGN +KVAF
Sbjct:    1 VLHVSNLTRNVKAAHLQEIFGCYGTVAKVELAIDKKLGLPKGYAFVEFSNRTDAEQAQLYLDGGQLDGNYVKVAF 75

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BLAST of mRNA_H-paniculata_contig8918.16795.1 vs. uniprot
Match: B8AWW3_ORYSI (RRM domain-containing protein n=2 Tax=Oryza TaxID=4527 RepID=B8AWW3_ORYSI)

HSP 1 Score: 112 bits (279), Expect = 1.030e-25
Identity = 50/91 (54.95%), Postives = 75/91 (82.42%), Query Frame = 0

Query:  119 ASMLHVSNLTRNVTADHLKEMFSSYGKVTSVDLAVDKRVNLPKGYAFVEFVDRTEAEQAQLYLDGGQLDGNKIKVAFILVTKKRRQSSSPK 209
            +++LHV +L+RNV  DHLKE+F +YG+V +V+L++D+ VNLP+GY +VEF +R +AE+A LYLDGGQ+DGN +KV F L  +++R ++SPK
Sbjct:   68 STVLHVDHLSRNVNEDHLKEIFENYGEVVNVELSMDRVVNLPRGYGYVEFKNRADAEKALLYLDGGQIDGNVVKVRFALPPQQQRAAASPK 158

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BLAST of mRNA_H-paniculata_contig8918.16795.1 vs. uniprot
Match: I0YZG6_COCSC (RRM domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YZG6_COCSC)

HSP 1 Score: 113 bits (283), Expect = 2.010e-25
Identity = 51/87 (58.62%), Postives = 72/87 (82.76%), Query Frame = 0

Query:  122 LHVSNLTRNVTADHLKEMFSSYGKVTSVDLAVDKRVNLPKGYAFVEFVDRTEAEQAQLYLDGGQLDGNKIKVAFILVTKKRRQSSSP 208
            LHV +LTRNVT DH+KE+FS++G + SV+L+VDK VNLP+G+A+VE+ DR EAE+A++++DGGQLDGN + V F+LV +KR    +P
Sbjct:  130 LHVGHLTRNVTEDHIKEIFSTFGAIKSVELSVDKVVNLPRGFAYVEYKDRDEAEKARVHMDGGQLDGNVLSVQFVLVPRKRTPPPAP 216

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BLAST of mRNA_H-paniculata_contig8918.16795.1 vs. uniprot
Match: A0A7S2SUR0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUR0_9STRA)

HSP 1 Score: 108 bits (271), Expect = 4.850e-25
Identity = 50/94 (53.19%), Postives = 70/94 (74.47%), Query Frame = 0

Query:  122 LHVSNLTRNVTADHLKEMFSSYGKVTSVDLAVDKRVNLPKGYAFVEFVDRTEAEQAQLYLDGGQLDGNKIKVAFILVTKKRRQSSSPKGRDAER 215
            LHV+NLTRN+   HL E+F +YGKV   ++ +D+R NL KG A++EF  R++A+QAQLYLDG Q+DGN+IKVA +LV ++RR  S  + R  +R
Sbjct:   17 LHVANLTRNIKEQHLLEIFGTYGKVNKAEVVLDRRTNLTKGLAYIEFSRRSDADQAQLYLDGAQIDGNRIKVALVLVDRRRRSPSPRQDRGRDR 110

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BLAST of mRNA_H-paniculata_contig8918.16795.1 vs. uniprot
Match: Q65XI3_ORYSJ (Os05g0105900 protein n=5 Tax=Oryza TaxID=4527 RepID=Q65XI3_ORYSJ)

HSP 1 Score: 112 bits (279), Expect = 5.250e-25
Identity = 50/91 (54.95%), Postives = 75/91 (82.42%), Query Frame = 0

Query:  119 ASMLHVSNLTRNVTADHLKEMFSSYGKVTSVDLAVDKRVNLPKGYAFVEFVDRTEAEQAQLYLDGGQLDGNKIKVAFILVTKKRRQSSSPK 209
            +++LHV +L+RNV  DHLKE+F +YG+V +V+L++D+ VNLP+GY +VEF +R +AE+A LYLDGGQ+DGN +KV F L  +++R ++SPK
Sbjct:   65 STVLHVDHLSRNVNEDHLKEIFENYGEVVNVELSMDRVVNLPRGYGYVEFKNRADAEKALLYLDGGQIDGNVVKVRFALPPQQQRAAASPK 155

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BLAST of mRNA_H-paniculata_contig8918.16795.1 vs. uniprot
Match: B9FM15_ORYSJ (RRM domain-containing protein n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=B9FM15_ORYSJ)

HSP 1 Score: 112 bits (279), Expect = 8.360e-25
Identity = 50/91 (54.95%), Postives = 75/91 (82.42%), Query Frame = 0

Query:  119 ASMLHVSNLTRNVTADHLKEMFSSYGKVTSVDLAVDKRVNLPKGYAFVEFVDRTEAEQAQLYLDGGQLDGNKIKVAFILVTKKRRQSSSPK 209
            +++LHV +L+RNV  DHLKE+F +YG+V +V+L++D+ VNLP+GY +VEF +R +AE+A LYLDGGQ+DGN +KV F L  +++R ++SPK
Sbjct:  135 STVLHVDHLSRNVNEDHLKEIFENYGEVVNVELSMDRVVNLPRGYGYVEFKNRADAEKALLYLDGGQIDGNVVKVRFALPPQQQRAAASPK 225

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BLAST of mRNA_H-paniculata_contig8918.16795.1 vs. uniprot
Match: A0A0D9WBU4_9ORYZ (RRM domain-containing protein n=1 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9WBU4_9ORYZ)

HSP 1 Score: 111 bits (277), Expect = 9.670e-25
Identity = 52/93 (55.91%), Postives = 77/93 (82.80%), Query Frame = 0

Query:  119 ASMLHVSNLTRNVTADHLKEMFSSYGKVTSVDLAVDKRVNLPKGYAFVEFVDRTEAEQAQLYLDGGQLDGNKIKVAFILVTKKRRQSSSPKGR 211
            +++LHV +L+RNV  DHLKE+F +YG+V +V+L++D+ VNLP+GY +VEF +R++AE+A LYLDGGQ+DGN +KV F L T ++R ++SPK R
Sbjct:   63 STVLHVDHLSRNVNEDHLKEIFENYGEVVNVELSMDRVVNLPRGYGYVEFKNRSDAEKALLYLDGGQIDGNVVKVRFAL-TPQQRANASPKAR 154

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BLAST of mRNA_H-paniculata_contig8918.16795.1 vs. uniprot
Match: A0A5J4XY81_9CHLO (Arginine serine-rich splicing factor SR45 transcript I n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XY81_9CHLO)

HSP 1 Score: 108 bits (270), Expect = 1.020e-23
Identity = 50/82 (60.98%), Postives = 68/82 (82.93%), Query Frame = 0

Query:  120 SMLHVSNLTRNVTADHLKEMFSSYGKVTSVDLAVDKRVNLPKGYAFVEFVDRTEAEQAQLYLDGGQLDGNKIKVAFILVTKK 201
            S LHV +LTRNV A+H++E+FS++G V  V+LA+DK VNLP+G+A+VEF  R+EAE AQ  +DGGQLDGN++ VAF+LV +K
Sbjct:  134 SRLHVGHLTRNVQAEHIQEIFSTFGTVKHVELAMDKAVNLPRGFAYVEFSRRSEAEDAQRLMDGGQLDGNQLSVAFVLVPRK 215

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig8918.16795.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig8918.16795.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G2Q3_ECTSI	2.560e-42	91.67	RRM domain-containing protein n=2 Tax=Ectocarpus T...	[more]
A0A7S2XYG7_9STRA	4.150e-31	69.89	Hypothetical protein (Fragment) n=2 Tax=Fibrocapsa...	[more]
A0A835YNB5_9STRA	5.130e-30	73.33	RRM domain-containing protein (Fragment) n=1 Tax=T...	[more]
B8AWW3_ORYSI	1.030e-25	54.95	RRM domain-containing protein n=2 Tax=Oryza TaxID=...	[more]
I0YZG6_COCSC	2.010e-25	58.62	RRM domain-containing protein n=1 Tax=Coccomyxa su...	[more]
A0A7S2SUR0_9STRA	4.850e-25	53.19	Hypothetical protein n=1 Tax=Rhizochromulina marin...	[more]
Q65XI3_ORYSJ	5.250e-25	54.95	Os05g0105900 protein n=5 Tax=Oryza TaxID=4527 RepI...	[more]
B9FM15_ORYSJ	8.360e-25	54.95	RRM domain-containing protein n=1 Tax=Oryza sativa...	[more]
A0A0D9WBU4_9ORYZ	9.670e-25	55.91	RRM domain-containing protein n=1 Tax=Leersia perr...	[more]
A0A5J4XY81_9CHLO	1.020e-23	60.98	Arginine serine-rich splicing factor SR45 transcri...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 121..194 e-value: 1.7E-21 score: 87.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 123..192 e-value: 8.2E-17 score: 60.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 120..198 score: 17.199
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 53..211 e-value: 6.2E-28 score: 99.8
None	No IPR available	PANTHER	PTHR15481	RIBONUCLEIC ACID BINDING PROTEIN S1	coord: 16..248
None	No IPR available	PANTHER	PTHR15481:SF0	RNA-BINDING PROTEIN WITH SERINE-RICH DOMAIN 1	coord: 16..248
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 111..227

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig8918	contig	H-paniculata_contig8918:291..6405 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig8918.16795.1	mRNA_H-paniculata_contig8918.16795.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig8918 18..6405 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig8918.16795.1 ID=prot_H-paniculata_contig8918.16795.1|Name=mRNA_H-paniculata_contig8918.16795.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=272bp
MAAPTTASPAPASGAGRSRSRSRSGSRSSGRSNSKSSSSSSSSSSSSSSS
GGSRSRSRSDVGNGDENGASKSKTNGTRSRSASSSRSRSRSRSRGRRGRS
RSPSKSNKALPKPRSPSPASMLHVSNLTRNVTADHLKEMFSSYGKVTSVD
LAVDKRVNLPKGYAFVEFVDRTEAEQAQLYLDGGQLDGNKIKVAFILVTK
KRRQSSSPKGRDAERRDRDRDRDRDRDRDRDRERERAGRGRFAGAARFGN
GTGSFNQSGGGPGGGHYGPAGG

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf