prot_H-paniculata_contig8800.16713.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig8800.16713.1
Unique Nameprot_H-paniculata_contig8800.16713.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length186
Homology
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BLAST of mRNA_H-paniculata_contig8800.16713.1 vs. uniprot
Match: D7FJI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJI2_ECTSI)

HSP 1 Score: 216 bits (551), Expect = 2.670e-64
Identity = 130/181 (71.82%), Postives = 139/181 (76.80%), Query Frame = 0 
Query:    4 GNHIPHHASPAVAASXXXXXXXXAAGNGEILPATSLFVRKVDMTIDRDDMITHFSKYGDVTGISMNPTRGYAFIDYRNNECVALALSTKEHYVNRKLLVVEERHSPMMGRNSRGEHAGGRTGRTGXXXXXXXXXXXXXXXXXERRPPGGGRTGRASIGRGDRPESSGPKDGGYKSRARAEA 184
            G +IPHHASPAVAAS XXXX   AAGNGEI+PATSLFVRKVDMTIDRD+MI HFS YG+VTGISMNPTRGYAFIDYR NECV +ALSTKEHYVNRKLLVVEERHSPM+ RNSRGEH GGR G   XXXXXX    X      +RRP           GRG R    GPKDGGY++R RAEA
Sbjct:  413 GAYIPHHASPAVAASAXXXXEAAAAGNGEIMPATSLFVRKVDMTIDRDEMIAHFSAYGEVTGISMNPTRGYAFIDYRTNECVQIALSTKEHYVNRKLLVVEERHSPMVQRNSRGEHGGGRGG---XXXXXXRVSSXRDGRDGDRRP----------TGRGGRDRPDGPKDGGYRARGRAEA 580
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BLAST of mRNA_H-paniculata_contig8800.16713.1 vs. uniprot
Match: D7FSS4_ECTSI (Poly(A)-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSS4_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 4.340e-16
Identity = 46/96 (47.92%), Postives = 62/96 (64.58%), Query Frame = 0 
Query:   16 AASXXXXXXXXAAGNGEILPA--TSLFVRKVDMTIDRDDMITHFSKYGDVTGISMNPTRGYAFIDYRNNECVALALSTKEHYVNRKLLVVEERHSP 109
            AA+        AAG  +  PA  T+LFVRK+DM +DR+D+I HFS +G V  +SMNP+RGYAF+D  +++ V  A+ T EH V RK L VE +  P
Sbjct:  296 AAAPAFVPTAAAAGWRQRDPAGPTTLFVRKIDMKVDREDVIKHFSIFGQVLSVSMNPSRGYAFVDLDSHDAVLRAVRTAEHTVGRKTLQVEVKKEP 391
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BLAST of mRNA_H-paniculata_contig8800.16713.1 vs. uniprot
Match: A0A6H5L5V4_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5V4_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 4.360e-16
Identity = 44/85 (51.76%), Postives = 59/85 (69.41%), Query Frame = 0 
Query:   27 AAGNGEILPA--TSLFVRKVDMTIDRDDMITHFSKYGDVTGISMNPTRGYAFIDYRNNECVALALSTKEHYVNRKLLVVEERHSP 109
            AAG  +  PA  T+LFVRK+DM +DR+D+I HFS +G V  +SMNP+RGYAF+D  +++ V  A+ T EH V RK L VE +  P
Sbjct:  426 AAGWRQRDPAGPTTLFVRKIDMKVDREDVIKHFSSFGKVLSVSMNPSRGYAFVDLDSHDAVLRAVRTAEHTVGRKTLQVEVKKEP 510
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8800.16713.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FJI2_ECTSI2.670e-6471.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FSS4_ECTSI4.340e-1647.92Poly(A)-binding protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L5V4_9PHAE4.360e-1651.76RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 38..104
e-value: 5.9E-10
score: 49.1
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 39..92
e-value: 2.3E-8
score: 33.7
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 37..108
score: 11.315
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 35..110
e-value: 3.1E-12
score: 48.4
IPR039539Ras GTPase-activating protein-binding proteinPANTHERPTHR10693RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEINcoord: 11..161
NoneNo IPR availablePANTHERPTHR10693:SF20AT27578Pcoord: 11..161
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 33..137

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8800contigH-paniculata_contig8800:3438..9099 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8800.16713.1mRNA_H-paniculata_contig8800.16713.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig8800 732..10062 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig8800.16713.1 ID=prot_H-paniculata_contig8800.16713.1|Name=mRNA_H-paniculata_contig8800.16713.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=186bp
MFGGNHIPHHASPAVAASAAAAREAAAAGNGEILPATSLFVRKVDMTIDR
DDMITHFSKYGDVTGISMNPTRGYAFIDYRNNECVALALSTKEHYVNRKL
LVVEERHSPMMGRNSRGEHAGGRTGRTGGRGRGSGGRDARDGERGERRPP
GGGRTGRASIGRGDRPESSGPKDGGYKSRARAEAV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR039539Ras_GTPase_bind_prot
IPR035979RBD_domain_sf