prot_H-paniculata_contig88.16709.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig88.16709.1
Unique Nameprot_H-paniculata_contig88.16709.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length1482
Homology
BLAST of mRNA_H-paniculata_contig88.16709.1 vs. uniprot
Match: D7FLR7_ECTSI (Histone hairpin binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLR7_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 2.730e-28
Identity = 66/109 (60.55%), Postives = 89/109 (81.65%), Query Frame = 0
Query: 1285 EAVTEEGMEGDLPRHMQGRAPDFKAEGGGDGNGLKFASDRETDARRLAQRQRQIDFGKNTTGYDRYLQAVPIHKRTKYDPETPDVGEKQSKKKFDWKVRTWRRRLHRWD 1393
            E  TEE ++ +LPRH+ G+ PDF+AEGGG G  LKFASDRE D  R+AQRQ+QIDFGKNT+GYDRYL AVP +KR++ DP+TP+  +K SK+++D ++R+WRR+LH +D
Sbjct:  879 EEATEEEVK-ELPRHLLGKKPDFEAEGGGQGEALKFASDREEDPHRIAQRQKQIDFGKNTSGYDRYLAAVPRNKRSRGDPKTPNKEKKMSKRRWDGQIRSWRRQLHEYD 986          
BLAST of mRNA_H-paniculata_contig88.16709.1 vs. uniprot
Match: F0XVG5_AURAN (SLBP_RNA_bind domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XVG5_AURAN)

HSP 1 Score: 92.8 bits (229), Expect = 5.120e-19
Identity = 43/69 (62.32%), Postives = 54/69 (78.26%), Query Frame = 0
Query: 1325 ETDARRLAQRQRQIDFGKNTTGYDRYLQAVPIHKRTKYDPETPDVGEKQSKKKFDWKVRTWRRRLHRWD 1393
            ETDARRL+QR+++I +GKNT GYDRY + VP  KR++ DP TPDV  K SK++FD  V+ WRRRLH WD
Sbjct:    1 ETDARRLSQRRKEITYGKNTLGYDRYTRLVPKEKRSRQDPRTPDVTGKYSKRQFDGIVKAWRRRLHEWD 69          
BLAST of mRNA_H-paniculata_contig88.16709.1 vs. uniprot
Match: A0A2D4C4S2_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C4S2_PYTIN)

HSP 1 Score: 93.6 bits (231), Expect = 5.920e-16
Identity = 48/74 (64.86%), Postives = 54/74 (72.97%), Query Frame = 0
Query: 1320 FASDRETDARRLAQRQRQIDFGKNTTGYDRYLQAVPIHKRTKYDPETPDVGEKQSKKKFDWKVRTWRRRLHRWD 1393
             A++RETD  RLAQRQ+QID+GKNT GYDRY   VP HKR K DP TPD   K SKK FD  VR WR+ LHR+D
Sbjct:  288 MATERETDEHRLAQRQKQIDYGKNTLGYDRYCAQVPRHKRRKGDPMTPDKTLKVSKKGFDAMVRRWRQALHRYD 361          
BLAST of mRNA_H-paniculata_contig88.16709.1 vs. uniprot
Match: A0A225WRR9_9STRA (SLBP_RNA_bind domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WRR9_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 6.310e-16
Identity = 47/100 (47.00%), Postives = 58/100 (58.00%), Query Frame = 0
Query: 1294 GDLPRHMQGRAPDFKAEGGGDGNGLKFASDRETDARRLAQRQRQIDFGKNTTGYDRYLQAVPIHKRTKYDPETPDVGEKQSKKKFDWKVRTWRRRLHRWD 1393
            GD  +   G A +       D      A  +ETD  RLAQRQ+QID+GKNT GYDRY   VP H+R  Y P+TPD  +   KK FD  VR WR+ LH++D
Sbjct:   34 GDQDQSRYGNADNKGGRADADAKVKTLADKKETDPHRLAQRQKQIDYGKNTIGYDRYCAQVPRHQRRSYHPKTPDKTKSVGKKVFDGMVRKWRQALHKYD 133          
BLAST of mRNA_H-paniculata_contig88.16709.1 vs. uniprot
Match: A0A835ZJ21_9STRA (Histone RNA hairpin-binding protein RNA-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ21_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 8.910e-16
Identity = 51/102 (50.00%), Postives = 67/102 (65.69%), Query Frame = 0
Query: 1293 EGDLPRHMQGRAPDFKAEGGGDGNGLKFASDRETDARRLAQRQRQIDFGKNTTGYDRYLQAVPIHKRTK-YDPETPDVGEKQSKKKFDWKVRTWRRRLHRWD 1393
            +G LP  + G+AP F+A GG   +  +F  DRETD  R+AQR +QI +GKNT  YDRY++ VP HKR +   P TP+     SK++FD  V  WRR+LHRWD
Sbjct:  307 QGVLPSTVTGQAPRFEAAGGPLTSAPRFRKDRETDPHRIAQRMKQIMYGKNTLAYDRYVREVPRHKRVRGKHPATPNPHGIYSKRQFDGIVAAWRRQLHRWD 408          
BLAST of mRNA_H-paniculata_contig88.16709.1 vs. uniprot
Match: A0A6G0XY66_9STRA (SLBP_RNA_bind domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XY66_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 5.740e-15
Identity = 51/108 (47.22%), Postives = 68/108 (62.96%), Query Frame = 0
Query: 1324 RETDARRLAQRQRQIDFGKNTTGYDRYLQAVPIHKRTK-YDPETPDVGEKQSKKKFDWKVRTWRRRLHRWDDKPSPTTTTTATPAAEERELKPTSSEDKGGIKNTPPQ 1430
            +ETD  +LAQRQ+QIDFGKNT GYDRY+Q VP H+R     P TPD     SK+ +D +V+ WRR LH++D +P+     T  P+++E   K    ED   +  TPPQ
Sbjct:   18 KETDPHKLAQRQKQIDFGKNTIGYDRYIQEVPKHQRKPGIHPSTPDKHAVASKRAWDGRVQAWRRHLHKYDPQPA-----TPQPSSQEAAKK----EDPVPVVVTPPQ 116          
BLAST of mRNA_H-paniculata_contig88.16709.1 vs. uniprot
Match: A0A835WHX8_9CHLO (SLBP_RNA_bind domain-containing protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WHX8_9CHLO)

HSP 1 Score: 88.2 bits (217), Expect = 7.950e-15
Identity = 40/70 (57.14%), Postives = 54/70 (77.14%), Query Frame = 0
Query: 1324 RETDARRLAQRQRQIDFGKNTTGYDRYLQAVPIHKRTKYDPETPDVGEKQSKKKFDWKVRTWRRRLHRWD 1393
            ++ D  RLAQRQ+QID+GKNT GY RYLQ VP HKR K DP+TPD+    SK+ F+ +++ WRR+LH++D
Sbjct:   50 KDLDEHRLAQRQKQIDYGKNTLGYQRYLQLVPKHKRQKGDPQTPDMYINNSKRAFEGQIKVWRRQLHKYD 119          
BLAST of mRNA_H-paniculata_contig88.16709.1 vs. uniprot
Match: A0A1Y1HST1_KLENI (SLBP_RNA_bind domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HST1_KLENI)

HSP 1 Score: 87.4 bits (215), Expect = 8.620e-15
Identity = 43/76 (56.58%), Postives = 55/76 (72.37%), Query Frame = 0
Query: 1318 LKFASDRETDARRLAQRQRQIDFGKNTTGYDRYLQAVPIHKRTKYDPETPDVGEKQSKKKFDWKVRTWRRRLHRWD 1393
             K   +RETDA RLAQRQ+QIDFGKNT GY+RYL+  P  KR K DP TP + +  SK+ +D +++ WRR LHR+D
Sbjct:  156 FKKKVERETDAHRLAQRQKQIDFGKNTLGYERYLEVTPKAKRQKGDPTTPRIHQVCSKRSWDGQIKKWRRFLHRYD 231          
BLAST of mRNA_H-paniculata_contig88.16709.1 vs. uniprot
Match: A0A5D6Y3V0_9STRA (SLBP_RNA_bind domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y3V0_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 8.630e-15
Identity = 53/115 (46.09%), Postives = 69/115 (60.00%), Query Frame = 0
Query: 1284 KEAVTEEGMEGDLPRHMQGRAPDFKA---EGGGDGNGLKFASD-RETDARRLAQRQRQIDFGKNTTGYDRYLQAVPIHKRTK-YDPETPDVGEKQSKKKFDWKVRTWRRRLHRWD 1393
            + A  ++G    + R   GRAPD K    +  G  + ++  S+ +E DA RLAQRQ+QID+GKNT GYDRY  AVP H+R +   P TPD     SKK FD  VR WR+ LH +D
Sbjct:    3 RHAADDDGGGSGVERRDHGRAPDAKRRRQDERGSASSVRLLSEAKEEDAHRLAQRQKQIDYGKNTVGYDRYCAAVPRHQRRRGVHPITPDKTLSVSKKAFDGMVRKWRQALHTFD 117          
BLAST of mRNA_H-paniculata_contig88.16709.1 vs. uniprot
Match: A0A835T0C6_CHLIN (SLBP_RNA_bind domain-containing protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835T0C6_CHLIN)

HSP 1 Score: 90.1 bits (222), Expect = 1.340e-14
Identity = 43/70 (61.43%), Postives = 53/70 (75.71%), Query Frame = 0
Query: 1325 ETDARRLAQRQRQIDFGKNTTGYDRYLQAVPIHKRTKYDPETPDVGEKQSKKKFDWKVRTWRRRLHRWDD 1394
            + D  RLAQRQ+QIDFGKNTTGY RYLQ VP +KR + DP TPD+    SK++FD +V  WRR LH++DD
Sbjct:   97 DLDPHRLAQRQKQIDFGKNTTGYQRYLQLVPRNKRRRTDPATPDIHANISKRRFDGQVVVWRRALHKYDD 166          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig88.16709.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLR7_ECTSI2.730e-2860.55Histone hairpin binding protein n=1 Tax=Ectocarpus... [more]
F0XVG5_AURAN5.120e-1962.32SLBP_RNA_bind domain-containing protein (Fragment)... [more]
A0A2D4C4S2_PYTIN5.920e-1664.86Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A225WRR9_9STRA6.310e-1647.00SLBP_RNA_bind domain-containing protein n=1 Tax=Ph... [more]
A0A835ZJ21_9STRA8.910e-1650.00Histone RNA hairpin-binding protein RNA-binding do... [more]
A0A6G0XY66_9STRA5.740e-1547.22SLBP_RNA_bind domain-containing protein n=1 Tax=Ap... [more]
A0A835WHX8_9CHLO7.950e-1557.14SLBP_RNA_bind domain-containing protein n=1 Tax=Ch... [more]
A0A1Y1HST1_KLENI8.620e-1556.58SLBP_RNA_bind domain-containing protein n=1 Tax=Kl... [more]
A0A5D6Y3V0_9STRA8.630e-1546.09SLBP_RNA_bind domain-containing protein n=1 Tax=Py... [more]
A0A835T0C6_CHLIN1.340e-1461.43SLBP_RNA_bind domain-containing protein n=1 Tax=Ch... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029344Histone RNA hairpin-binding protein, RNA-binding domainPFAMPF15247SLBP_RNA_bindcoord: 1326..1394
e-value: 1.8E-24
score: 85.6
IPR038294SLBP, RNA-binding domain superfamilyGENE3D1.10.8.1120coord: 1320..1394
e-value: 8.5E-26
score: 91.8
IPR026502Histone RNA stem-loop-binding protein SLBP1/SLBP2PANTHERPTHR17408HISTONE RNA HAIRPIN-BINDING PROTEINcoord: 1322..1438
NoneNo IPR availablePANTHERPTHR17408:SF11STEM-LOOP-BINDING PROTEIN 2coord: 1322..1438

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig88contigH-paniculata_contig88:687..16531 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig88.16709.1mRNA_H-paniculata_contig88.16709.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig88 687..16621 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig88.16709.1 ID=prot_H-paniculata_contig88.16709.1|Name=mRNA_H-paniculata_contig88.16709.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1482bp
MSPCDSPRFGFGGRQRMGGEHGMDGSMSLDDTTFSRDEHRAKIKNRRTPS
DPGIDRGPMKAGKKEGVASVIADCSMTSAERTAETSEEGSGVGEEHREDG
VEEVRGVIGGGEGGDAMDDDDDGGGGDDDLEEGEIAVVLPSCFSLPPTAE
NPESEEQESRKETIVGDQEGSRNSVLGGEKRNRPTERLGHSSWAGTDRSP
SRDKGEVSTRNASSPLPCTRLTPVDRSLDQSAHRSSRRCAGAKHTVCRSA
DRLASGDNPGAKRTVGRSADRSAHRSSGGDVLTKRFDSSTSSNGGMRRST
GTTSTIPTTGRRNHEHDDADGKRHRLGVVPERSRERSPDRRSSDKHTIAG
RMDSNTPDQQRTRCRSPADRKCRGEEGLRSSRFLAQRSGSLGRTRDRSRD
RSQHRLSGERRNMAQRSTASSRRDDVLHPSPNICGLDWLAISPDRSTARP
RDDRCRSREGGDGRRVWEGEVAVSTTGRSLHRSRDRSRDWSSRERQSVSG
SRDDMPDSYPNARNPDRMVPISNRWVSVSDRSALFRDEGGRSRDTRGGTL
VQEEDVAFNKGRALDRSRDRSSRERRNATKRTTSSRASRNHGGGGTRSRD
DVLNPYPTARNPNRVVPVPDRLIVSLDRPAPGSRDDGGRSRNAGDGRRVD
DEKVGASTADRSARDRSQNRSYREQRSVAERVTKIPDSRRYGSGSGGGGG
GSGATRKPNGVVPVPDPHRSVVPVDRSAPRSGNNGDRSRDVGDRRRVREE
VAASSLGRSLDRSQDRSREISTERGNLGEGATRINSSSRGHGGGIRGGGS
SGGRDDHDSCRRGTVGGERVRDGDVGVEGPEKSGSRSRERNSCGGGQRGG
SGGSGREGDCSKRVGSRAKVANANGPVTDGRRMVSNVDDTGTIHSDGRRA
EGSERRGEEVMILSGVKSRKSRRRDAGRCAERFGERLADHSAERFAERLQ
GGGKETSSSSAKNRARSERQREGTRRYGEFSAERHQDRLAKERSERSTGD
TSSKARRREDDKSDVQLTGTKRSRMWSMDDEGGDFARHRSDRASVNGRSG
SKASDRIHGIADAPRRRGIGHNDNAEDNDINRSSEFPKYATTPAQQEHAR
SLSRTTGRSTVTPIDTRERHSVQPDCKSFASLSAGSTPAAAAAAAAAAAA
SSPSSSRPCSPLPAVGRPYPGRPYVNKPFSSRLLPAENDQSHARGRRGLP
PQQQQMMSAWSPGMSMSPELRLSQGWMNNPFVVQHVAGLPAAAQATAIAS
FAAAAATVESRASSEGGKALGAERSSDRLGVDDKEAVTEEGMEGDLPRHM
QGRAPDFKAEGGGDGNGLKFASDRETDARRLAQRQRQIDFGKNTTGYDRY
LQAVPIHKRTKYDPETPDVGEKQSKKKFDWKVRTWRRRLHRWDDKPSPTT
TTTATPAAEERELKPTSSEDKGGIKNTPPQDHDQNPGMGKEMSPPSSPRR
AWNSPTAAAIAAAGGSGQDVGMVSGGLGDYSR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR029344SLBP_RNA_bind
IPR038294SLBP_RNA_bind_sf
IPR026502SLBP1/SLBP2