prot_H-paniculata_contig8744.16667.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig8744.16667.1
Unique Nameprot_H-paniculata_contig8744.16667.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length377
Homology
[Close]
BLAST of mRNA_H-paniculata_contig8744.16667.1 vs. uniprot
Match: A0A6H5JHX4_9PHAE (SNF2-rel_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHX4_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 2.440e-5
Identity = 49/67 (73.13%), Postives = 51/67 (76.12%), Query Frame = 0 
Query:  207 SEPLPVAPVLGCAGPWLGARVSADPRPXXXXXXXXXXXXXXXXTAVXAAVAAEMCAPDYPLARSRRF 273
            S PLP AP+LGCAG WLGARV ADPRPXXXXXXXXXXXXXXXX  V  AVA+      YPL R RRF
Sbjct:   63 SPPLPHAPILGCAGRWLGARVCADPRPXXXXXXXXXXXXXXXXXXVAEAVASSQRDLGYPLPRKRRF 129
[Close]
BLAST of mRNA_H-paniculata_contig8744.16667.1 vs. uniprot
Match: D7FME7_ECTSI (Myb-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME7_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 2.690e-5
Identity = 50/67 (74.63%), Postives = 51/67 (76.12%), Query Frame = 0 
Query:  207 SEPLPVAPVLGCAGPWLGARVSADPRPXXXXXXXXXXXXXXXXTAVXAAVAAEMCAPDYPLARSRRF 273
            S PLP APVLGCAG WLGARV ADPRPXXXXXXXXXXXXXXXX  V  AVA+      YPL R RRF
Sbjct:  502 SPPLPHAPVLGCAGLWLGARVCADPRPXXXXXXXXXXXXXXXXXXVAEAVASSQRDLGYPLPRKRRF 568
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8744.16667.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JHX4_9PHAE2.440e-573.13SNF2-rel_dom domain-containing protein n=1 Tax=Ect... [more]
D7FME7_ECTSI2.690e-574.63Myb-like domain-containing protein n=1 Tax=Ectocar... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 37..57
NoneNo IPR availablePANTHERPTHR34403:SF3coord: 5..190
NoneNo IPR availablePANTHERPTHR34403FAMILY NOT NAMEDcoord: 5..190

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8744contigH-paniculata_contig8744:4249..9753 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8744.16667.1mRNA_H-paniculata_contig8744.16667.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig8744 4248..9753 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig8744.16667.1 ID=prot_H-paniculata_contig8744.16667.1|Name=mRNA_H-paniculata_contig8744.16667.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=377bp
HGQGQVHAQAAQVQVQAHGQGQFQAQAAQVQVQGQAQAQAQAQAAQAQAQ
AQAQAQAQVQAQAHAHAQVQAHAQAQAQAQAHAQAQAQAQAHAQAHAHAQ
AQAHAQAQAQAQAHAEAEGLQRVEGQGHNLTIRAIKERNRAAAAAFEQAR
RVEALRRKEAEDQMRAKTLSAKAASDATAKQQAAAAAAARAASARSPKEK
EKESLGSEPLPVAPVLGCAGPWLGARVSADPRPPPPPPPPSCSRRGEAAT
AVAAAVAAEMCAPDYPLARSRRFPTREKRRLPKAEEQEPKAGVKLEVGVK
EEGDDRSGGTADKEGGESWPPLAGGGAGGVPASGGAQQGSTAAAGSSASS
GSYSNAAGTMTTSGQPKTSSVPGALGG
back to top