prot_H-paniculata_contig869.16626.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig869.16626.1
Unique Nameprot_H-paniculata_contig869.16626.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length480
Homology
BLAST of mRNA_H-paniculata_contig869.16626.1 vs. uniprot
Match: D8LDS8_ECTSI (SECIS binding protein 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDS8_ECTSI)

HSP 1 Score: 224 bits (571), Expect = 3.590e-61
Identity = 183/517 (35.40%), Postives = 267/517 (51.64%), Query Frame = 0
Query:    4 EEDVEDDEEHEEILQNLSDMSSTFGTVRHVHV----PRKG--QEGLGT-----------AVVAFDTLAAATDARAGFHGQVVAGQTLEAELVQDTDALLISPHLPEFTFQRDHVNLMEDDSGRGDDNFQGGHVLCNREGMSTAP-------PTPAPARSWRVVVRNMVDKEDILADDEEYDEVFADAAAMVGEYGNVLALNIPRGVSEAGACGTCSNPGDSGRDAETTGVDTVGVVTAVFGSMVEADACIKGLRGRIIGGKALEAELCASSPPLLIEALS-------PPKXXXXXXXXXXXXDNTHNRGGREYSAVVPKESDRRRDSVAKRNSSRGENAGG---------SDAEGVSGAAAVARN-DGTVCEALQLRGKRLKRMPEKYREAAALPRLPPSSSDAGAAPTRTYINQSPDPEVNNLVFEMLQLLMKYQEKVRLKDPTRASSRRRLVMGLREVMRGVRANKIHLLIVAPDIDAMEAKGGLNDKVVEILDAAEKAETPSEAGIPVVFALTK 479
            E+D++D++E+ EI  N+S M   +G +  V V    P KG  QE + T            VV F +LA A     G  G  V G+ L+A +V D++ +L  P  P F   ++H +  +  +       QG  ++    G   +P          A +  WRVV+R ++D++D+  DD++Y EV +D  A+V  YG V+ L+IPRG  E G+C   + PG++                 VF S+ EA+AC +GL GR + G  L+A++     P     L        PP                H     +    VP E D     + +   +R E+  G          + + ++ AA   ++ +G    AL   GKR++    KY+EAAALP+ P      G  P   Y+NQ PD EVN+LVFEMLQLL K+QE+ RL DP++A +RRRLV+GLREV+RGV+A K+ LLIVAP++DA+  +GGL+DKVVEI+D A +AE       PVVFAL+K
Sbjct:  315 EDDLDDEDEYAEISANVSAMMGCYGKLVDVQVRRSSPSKGEVQEDVATRAATTAGATQAVVVTFGSLAEAEACVQGIKGCRVGGKELDAHVVLDSERVL--PSNPAFKCDQEHAHSSDVAAAVAG---QGDSMMKQEAGTEPSPCVDQDTAAAVASSTEWRVVIRGLIDEDDLQDDDDDYAEVCSDVTALVSSYGAVVGLDIPRG-RETGSCCYGAEPGEA---------------VVVFRSLQEAEACARGLSGRKVAGNILDAQVLTQPAPSQQGPLQGGASGTGPPVANRERKPAKECPLPQHQASSHQSCGKVP-ELDGSGPGMLRGFGNRVEDCCGRPKIACTDSDEPQAIAAAAPPGQSIEGPKTTALAKAGKRIQ---TKYQEAAALPKPP---GVRGGLPN-AYVNQPPDKEVNDLVFEMLQLLFKFQERARLSDPSKAKTRRRLVIGLREVLRGVKAKKVRLLIVAPNVDAVGGEGGLDDKVVEIIDKAREAE------YPVVFALSK 796          
BLAST of mRNA_H-paniculata_contig869.16626.1 vs. uniprot
Match: A0A6H5LFS5_9PHAE (Ribosomal_L7Ae domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LFS5_9PHAE)

HSP 1 Score: 182 bits (462), Expect = 4.850e-46
Identity = 173/533 (32.46%), Postives = 248/533 (46.53%), Query Frame = 0
Query:    4 EEDVEDDEEHEEILQNLSDMSSTFGTVRHVHVPR------KGQEGLGT-----------AVVAFDTLAAATDARAGFHGQVVAGQTLEAELVQDTDALLISPHLPEFTFQRDHVNLMEDD-----SGRGDDNFQGGHVLCNREGMSTAP---PTPAPARSWRVVVRNMVDKEDILADDE----EYDEVFADAAAMVGEYGNVLALNIPRGVSEAGACGTCSNPGDSGRDAETTGVDTVGVVTAVFGSMVEADACIKGLRGRIIGGKALEAELCA----------------SSPPLLIEALSPPKXXXXXXXXXXXXDNTHNRGGREYSAVVPK-----------ESDRRRDSVAKRNSSRGENAGGSDAEGVSGAAAVARN-DGTVCEALQLRGKRLKRMPEKYREAAALPRLPPSSSDAGAAPTRTYINQSPDPEVNNLVFEMLQLLMKYQEKVRLKDPTRASSRRRLVMGLREVMRGVRANKIHLLIVAPDIDAMEAKGGLNDKVVEILDAAEKAETPSEAGIPVVFALTK 479
            E+D++D++E+ EI  N+S M   +G +  V V R      + QE + T            VV F +LA A     G  G  V G+ L+A +V D++ +L  P  P      D  +  + D     +G+G+        +    GM   P    T A                           +Y EV +D   +V  YG V+ L+IPRG  E G C   + PG++                  F S+ EA+AC +GL GR + G  L+A++                  + PP++     P K              +H   G+     V             E DR R  ++  +S         + +  + AA  A + +G    AL   GKR+   P KY+EAAALP+ PP  S  G+     Y++Q PD E N+LVFEMLQLL K+QE+ RL DP +A +RRRLV+GLREV+RGV+A K+ LLIVAP++DA+  +GGL+DKVVEI+D A + ETP      VVFAL+K
Sbjct:  501 EDDLDDEDEYAEISANVSTMMGCYGKLVDVQVRRSSPSEGEAQEDVATRAATTAGATQAVVVTFGSLAEAEACVQGIKGCRVGGKELDAHVVHDSERVL--PPSPVLKCD-DQEHARQSDVAIAVAGQGES------AMKKEAGMERPPCVDQTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXDYAEVCSDVTGLVSSYGAVVGLDIPRG-RETGICCYGAEPGEA---------------VVAFRSLQEAEACARGLSGRKVAGNILDAQVLTQPTPSQQGTLQGGASGTDPPVVHREWKPAKGCTLPQQQSMATPPSHQLCGKVAELHVSGPGLLGGIGNSGEDDRGRPKISFTDSD--------EPQATAAAAPPAHSIEGPKTAALAKAGKRI---PMKYQEAAALPK-PPGISGGGSP--NAYVHQPPDKEANDLVFEMLQLLFKFQERARLSDPAKAKTRRRLVIGLREVLRGVKAKKVRLLIVAPNVDAVGGEGGLDDKVVEIIDKAREEETP------VVFALSK 988          
BLAST of mRNA_H-paniculata_contig869.16626.1 vs. uniprot
Match: A0A7S2DRG5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DRG5_9STRA)

HSP 1 Score: 111 bits (277), Expect = 5.690e-25
Identity = 64/137 (46.72%), Postives = 91/137 (66.42%), Query Frame = 0
Query:  344 KRMPEKYREAAALPRLPPSSSDAGAAPTRTYINQSP-DPEVNNLVFEMLQLLMKYQEKVRLKDPTRASSRRRLVMGLREVMRGVRANKIHLLIVAPDIDAMEAKGGLNDKVVEILDAAEKAETPSEAGIPVVFALTK 479
            KR+P+KY  A  +P++P  +      P R Y+   P   E++ LVF MLQ LM++QE++RL+DPT++  RRRLV GLREV RG+++ K+  LIVAP+ID    +GGLND V +IL  A + ET +     V+FAL+K
Sbjct:   13 KRIPDKYCSAKQVPKIPNKN------PVREYVTSQPLSAELDKLVFSMLQELMEFQERLRLRDPTKSKLRRRLVFGLREVKRGIKSEKVKCLIVAPNIDEGSIQGGLNDTVNDILTLARERETTT-----VIFALSK 138          
BLAST of mRNA_H-paniculata_contig869.16626.1 vs. uniprot
Match: A0A835ZCM8_9STRA (Ribosomal_L7Ae domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCM8_9STRA)

HSP 1 Score: 113 bits (283), Expect = 5.140e-23
Identity = 118/453 (26.05%), Postives = 190/453 (41.94%), Query Frame = 0
Query:    1 MVAEEDVEDDEEHEEILQNLSDMSSTFGTVRHVHVPRKGQEGLGTAVVAFDTLAAATDARAGFHGQVVAGQTLEAELVQDTDALLISPHLPEFTFQRDHVNLMEDDSGRGDDNFQGGHVLCNREGMSTAPPTPAPARSWRVVVRNMVDKEDILADDEEYDEVFADAAAMVGEYGNVLALNIPR--GVSEAGACGTCSNPGDSGRDAETTGVDTVGVVTAVFGSMVEADACIKGLRGRIIGGKALEAELCASSPPLLIEALSPPKXXXXXXXXXXXXDNTHNRGGREYSAVVPKESDRRRDSVAKRNSSRGENAGGSDAEGVSGAAAVARNDGTVCEALQLRGKRLKRMPEKYREAAALPRLPPSSSDAGAA-PTRTYINQSPDPEVNNLVFEMLQLLMKYQEKVRLKDPTRASSRRRLVMGLREVMRGVRANKIHLLIVAPDIDAMEAKGGLN 450
            +V+ ED+ DD+E EEI  +++ + S +GT   + +PR    G+GT   +F    AA  A  G +G++V G+ + AELV   +A              D + ++++ SG G                              + + ++V  +++  DD+EY+EV  +AAA+ G YG V ++ + R  G + A A G  S P                 V   F +    +A + GL G  + G A+ A               P                    G  +  A  P                    A     E +  A A A     + E       R    P+ Y++AA +PR P SSS A A  P      + P  +V+ +V  ML  L ++QE+ R   P +A ++RRLV+GLREV+RG+RA  + ++++AP+I+ +   GG N
Sbjct:  214 LVSAEDLADDDEFEEIENDVTALISEYGTPTELLIPRGDAAGVGTVTASFGCAGAAAHAALGLNGRIVGGEVIRAELVAGVNAA-----------HADSLAVLQERSGSGSXXXXXXXXXXXXXAELV------------LQIDDLVSADEVQ-DDDEYEEVLENAAALGGRYGTVRSVYVDRKHGAAAAAAAGAASVP-----------------VLLRFANARCTEAAVLGLHGTTVSGFAISARAVPIGSCACAHLWVPGIDRVGAGAG----------GYEDTPAATPXXXXXXXXXXXXXXXXTPGRASPQQREALLAALANAARHKPLAE-------RRAAAPDSYKDAACVPRCPASSSSAAAPQPYAAAALRQPSADVDGVVAAMLGSLFRFQERQRAVTPAKAKAKRRLVLGLREVLRGLRAGAVKMVVIAPNINTVSG-GGAN 607          
BLAST of mRNA_H-paniculata_contig869.16626.1 vs. uniprot
Match: A0A7S2BNP8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BNP8_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 8.580e-20
Identity = 55/109 (50.46%), Postives = 74/109 (67.89%), Query Frame = 0
Query:  372 RTYINQSP-DPEVNNLVFEMLQLLMKYQEKVRLKDPTRASSRRRLVMGLREVMRGVRANKIHLLIVAPDIDAMEAKGGLNDKVVEILDAAEKAETPSEAGIPVVFALTK 479
            R Y+ Q   D E++ LVFEML  LMK+QE+ R++DPT+A  RRRLV GLREV RG++ANK+  ++VAP+ID     GGL+D V EI+  A  AE        ++FAL+K
Sbjct:    4 REYVTQQRLDGELDQLVFEMLGELMKFQERARIQDPTKAKLRRRLVFGLREVKRGIKANKVKCVVVAPNIDEGTMAGGLDDVVNEIITLARDAED-----CHIIFALSK 107          
BLAST of mRNA_H-paniculata_contig869.16626.1 vs. uniprot
Match: A0A7S1GBK4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GBK4_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 6.420e-16
Identity = 48/108 (44.44%), Postives = 72/108 (66.67%), Query Frame = 0
Query:  372 RTYINQSPDPEVNNLVFEMLQLLMKYQEKVRLKDPTRASSRRRLVMGLREVMRGVRANKIHLLIVAPDIDAMEAKGGLNDKVVEILDAAEKAETPSEAGIPVVFALTK 479
            R Y+ Q+P P ++ LV E L  L  YQE++R +   +A+ R+RL+ GLREV R +RA K+  L+V+P+I+   A+GGL+D+V  IL  AE+ E      +PVVFAL++
Sbjct:   23 REYVTQAPSPALDALVTEWLSTLFYYQERLRAQSKAKAAMRKRLLFGLREVDRSMRAGKVLCLVVSPNIEPGTARGGLDDRVGAILARAEENE------VPVVFALSR 124          
BLAST of mRNA_H-paniculata_contig869.16626.1 vs. uniprot
Match: T0RXS7_SAPDV (RRM domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0RXS7_SAPDV)

HSP 1 Score: 90.9 bits (224), Expect = 8.090e-16
Identity = 108/377 (28.65%), Postives = 162/377 (42.97%), Query Frame = 0
Query:  123 REGMSTAPPT----PAPARSWRVVVRNMVDKEDILADDEEYDEVFADAAAMVGEYGNVLALNIPRGVSEAGACGTCSNPGDSGRDAETTGVDTVGVVTAVFGSMVEADACIKGLRGRIIGGKALEAELCASSPPLLIEALS--------PPKXXXXXXXXXXXXDNTHNRGGREYSAVVPKES---DRRRDSVAKRNSSRGENAGGSDAEGVSGAAAVARNDGTVCEALQLRGKRLKRMPEKYREAAALPR---LPPSSSDAGAAPTRTYINQSPDP--EVNNLVFEMLQLLMKYQEKVRLKDPTRASSRRRLVMGLREVMRGVRANKIHLLIVAPDIDAMEAKGGLNDKVVEILDAAEKAETPSEAGIPVVFALTK 479
            + G S+A PT    P  ARS  V + ++V  ++I  DD+EY++  AD    +  +G V A++I R                           + G VT  +     ADA +  L     GG+ L   LC  + P   +A+S         P             D  H     E+S + P ++   DR              N G    +  S +AA+A       +       R++    +   A   P    +PP      A+  R Y++Q  D   E+   V  +L  LM+ QE+ RL +P +A   RRLV GLREV RG+++ K+  L+VA D+D   A GGL+DK+VE++D A   +      IPVVFAL+K
Sbjct:  155 KAGESSALPTGDGNPEAARS--VTIDHLVSVDEI-EDDDEYEDTLADVRVQLERHGAVAAIDIDR---------------------------STGTVTVTYNDSASADAAVAALHTATFGGRQL---LCLYATPATTDAMSWVTVAKYLEPADLADDDEFDEVRDEAH----AEFSKLHPVQAIEIDR--------------NTGVCRLQYASPSAAMAVTQQYDTKPYGGTPIRVEWAGGQVAPATRSPLTVDVPPVRKLRNASAIRAYVDQEIDECGELQVGVTALLGRLMQLQERARLTNPLKAKKTRRLVFGLREVKRGLKSLKVMCLLVAYDVDECAADGGLDDKIVELIDLARANK------IPVVFALSK 474          
BLAST of mRNA_H-paniculata_contig869.16626.1 vs. uniprot
Match: A0A1W0A520_9STRA (Ribosomal_L7Ae domain-containing protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A520_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 8.560e-16
Identity = 53/123 (43.09%), Postives = 75/123 (60.98%), Query Frame = 0
Query:  359 LPPSSSDAGAAPTRTYINQSPD--PEVNNLVFEMLQLLMKYQEKVRLKDPTRASSRRRLVMGLREVMRGVRANKIHLLIVAPDIDAMEAKGGLNDKVVEILDAAEKAETPSEAGIPVVFALTK 479
            LPP      A   R Y++Q  D   E+ + V  +L  LM+ QE+ RL +P +A   RR+V GLREV RG++  KI  L+VA D+D    +GGL+DKVVE++D A  ++      IPVVF+L+K
Sbjct:   45 LPPVRKLCNANQIREYVDQKVDIGGELESKVIALLNRLMQIQERARLTNPLKAKKTRRIVFGLREVKRGLKNLKIMCLLVAYDVDECTTEGGLDDKVVELIDLARTSK------IPVVFSLSK 161          
BLAST of mRNA_H-paniculata_contig869.16626.1 vs. uniprot
Match: A0A5J4XV51_9CHLO (Secis-binding 2 n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XV51_9CHLO)

HSP 1 Score: 85.9 bits (211), Expect = 6.520e-14
Identity = 50/126 (39.68%), Postives = 80/126 (63.49%), Query Frame = 0
Query:  362 SSSDAGAAPT--------RTYINQSPDPEVNNLVFEMLQLLMKYQEKVRLKDPTRASSRRRLVMGLREVMRGVRANKIHLLIVAPDIDAMEAKGGLNDKVVEILDAAEKAETPSEAGIPVVFALTK 479
            ++SD G   T        RTY  Q    E+N +V E+LQ L+ +QE+ + +DP +A+ ++RLV GLREV + V+ +K   ++VAP+I+ +E++GGL+D +  IL  AE      + G+PVVFAL++
Sbjct: 1026 TASDGGTGTTYVGIKAQCRTYCKQVISAELNRVVVELLQQLLFWQERQKAQDPLKATKKKRLVSGLREVAKAVKLHKAKTVVVAPNIEQIESEGGLDDLLGSILKQAE------DFGLPVVFALSR 1145          
BLAST of mRNA_H-paniculata_contig869.16626.1 vs. uniprot
Match: A0A067BZX4_SAPPC (Ribosomal_L7Ae domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BZX4_SAPPC)

HSP 1 Score: 84.3 bits (207), Expect = 1.040e-13
Identity = 99/366 (27.05%), Postives = 157/366 (42.90%), Query Frame = 0
Query:  125 GMSTAPPTPA--PARSWRVVVRNMVDKEDILADDEEYDEVFADAAAMVGEYGNVLALNIPRGVSEAGACGTCSNPGDSGRDAETTGVDTVGVVTAVFGSMVEADACIKGLRGRIIGGKAL------EAELCASSPPLLIEALSPPKXXXXXXXXXXXXDNTHNRGGREYSAVVPKES-DRRRDSVAKRNSSRGENAGGSDAEGVSGAAAVARNDGTVCEALQLRGKRLKRMPEKYREAAALPRLPPSSSDAGAAPTRTYINQSPDP--EVNNLVFEMLQLLMKYQEKVRLKDPTRASSRRRLVMGLREVMRGVRANKIHLLIVAPDIDAMEAKGGLNDKVVEILDAAEKAETPSEAGIPVVFALTK 479
            G S APP     P ++  V + ++V  ++I  DD+EY++  AD    +  +G + A++I R                           + G VT  + + V ADA +  L     GG+ L       A   A S   +++ L+P              + T      E+S + P ++ +  RD+   R            A  ++  A     D        +R +           +     +PP      A+  R Y++Q  D   E+   V  +L  LM+ QE+ RL +P +A   RRLV GLREV RG++  K+  L+VA D+D   A+GGL+DK+VE++D A   +      IPVVFAL+K
Sbjct:  155 GASLAPPPSDANPEKAQSVTIDHLVSVDEI-EDDDEYEDTLADVRLQLERHGAISAMDIDR---------------------------STGAVTVTYKASVSADAAVAALHNATFGGRQLLCLYATSATTDAMSWVTVLKYLAPADLADDDEFEEVRDEVTS-----EFSKLHPVQAVEIDRDTGVCRLQY---------ASPLAAMAVTQHYDNKPYGGTPIRVEWAGGQVAPPPTSIPTVDVPPVRKLRNASAIRAYVDQKIDVGGELQVGVTALLGRLMQLQERARLTNPLKAKKTRRLVFGLREVKRGLKNLKVMCLLVAYDVDECAAEGGLDDKIVELIDLARANK------IPVVFALSK 472          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig869.16626.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDS8_ECTSI3.590e-6135.40SECIS binding protein 2 n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LFS5_9PHAE4.850e-4632.46Ribosomal_L7Ae domain-containing protein n=1 Tax=E... [more]
A0A7S2DRG5_9STRA5.690e-2546.72Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A835ZCM8_9STRA5.140e-2326.05Ribosomal_L7Ae domain-containing protein n=1 Tax=T... [more]
A0A7S2BNP8_9STRA8.580e-2050.46Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S1GBK4_9STRA6.420e-1644.44Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
T0RXS7_SAPDV8.090e-1628.65RRM domain-containing protein n=1 Tax=Saprolegnia ... [more]
A0A1W0A520_9STRA8.560e-1643.09Ribosomal_L7Ae domain-containing protein (Fragment... [more]
A0A5J4XV51_9CHLO6.520e-1439.68Secis-binding 2 n=1 Tax=Trebouxia sp. A1-2 TaxID=2... [more]
A0A067BZX4_SAPPC1.040e-1327.05Ribosomal_L7Ae domain-containing protein n=1 Tax=S... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR02906450S ribosomal protein L30e-likeGENE3D3.30.1330.30coord: 386..479
e-value: 4.6E-6
score: 28.1
IPR02906450S ribosomal protein L30e-likeSUPERFAMILY55315L30e-likecoord: 374..446
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..82
e-value: 8.4E-14
score: 53.4
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 136..250
e-value: 1.7E-11
score: 45.9
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 18..73
e-value: 3.0E-5
score: 23.7
IPR004038Ribosomal protein L7Ae/L30e/S12e/Gadd45PFAMPF01248Ribosomal_L7Aecoord: 408..447
e-value: 8.6E-5
score: 22.2
IPR040051Selenocysteine insertion sequence-binding protein 2PANTHERPTHR13284FAMILY NOT NAMEDcoord: 293..479
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 11..79
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 144..247

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig869contigH-paniculata_contig869:709..4745 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig869.16626.1mRNA_H-paniculata_contig869.16626.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig869 709..4766 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig869.16626.1 ID=prot_H-paniculata_contig869.16626.1|Name=mRNA_H-paniculata_contig869.16626.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=480bp
MVAEEDVEDDEEHEEILQNLSDMSSTFGTVRHVHVPRKGQEGLGTAVVAF
DTLAAATDARAGFHGQVVAGQTLEAELVQDTDALLISPHLPEFTFQRDHV
NLMEDDSGRGDDNFQGGHVLCNREGMSTAPPTPAPARSWRVVVRNMVDKE
DILADDEEYDEVFADAAAMVGEYGNVLALNIPRGVSEAGACGTCSNPGDS
GRDAETTGVDTVGVVTAVFGSMVEADACIKGLRGRIIGGKALEAELCASS
PPLLIEALSPPKVPPPTQPPPSRRDNTHNRGGREYSAVVPKESDRRRDSV
AKRNSSRGENAGGSDAEGVSGAAAVARNDGTVCEALQLRGKRLKRMPEKY
REAAALPRLPPSSSDAGAAPTRTYINQSPDPEVNNLVFEMLQLLMKYQEK
VRLKDPTRASSRRRLVMGLREVMRGVRANKIHLLIVAPDIDAMEAKGGLN
DKVVEILDAAEKAETPSEAGIPVVFALTK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR029064L30e-like
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
IPR004038Ribosomal_L7Ae/L30e/S12e/Gad45
IPR040051SECISBP2
IPR035979RBD_domain_sf