prot_H-paniculata_contig8592.16553.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig8592.16553.1
Unique Nameprot_H-paniculata_contig8592.16553.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length179
Homology
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BLAST of mRNA_H-paniculata_contig8592.16553.1 vs. uniprot
Match: D8LKU2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKU2_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 2.510e-30
Identity = 61/88 (69.32%), Postives = 79/88 (89.77%), Query Frame = 0 
Query:   27 LVFSFYRAFDGESGSPVAHAEGNASSLAAAASVLLLLGDGPEGGNDFPPITHATLFVLMAIELAFSLAVGVSCLVFSINLVKKLSDDD 114
            L+F F+RAFDG SG P+   EGN+SSLAAAAS+LLLLGD P+GGNDFPPITHATLF+L+A+ELAFS A+GVSCL+F+++L++KL+ +D
Sbjct:  573 LLFRFHRAFDGFSGLPLPGPEGNSSSLAAAASILLLLGDAPDGGNDFPPITHATLFMLVAVELAFSFAMGVSCLLFNVSLLRKLAKED 660
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BLAST of mRNA_H-paniculata_contig8592.16553.1 vs. uniprot
Match: A0A835Z1J8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1J8_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.170e-14
Identity = 46/110 (41.82%), Postives = 70/110 (63.64%), Query Frame = 0 
Query:   29 FSFYRAFDGESGSPVAHAEGNASSLAAAASVLLLLGDGPEGGNDFPPITHATLFVLMAIELAFSLAVGVSCLVFSINLVKKLSDDDPHMV---PTTAGTVTALSADYSNM 135
            ++F RA+  ++G+P     G +SSLAAAA+++L+  DG +G +++PPI+HA +F LM  EL F+ AVGVSCLV S+ LV+KL + +   +   P    T T     Y+ M
Sbjct:  555 YAFARAYRVDTGAPADGEYGVSSSLAAAAAIVLMREDGAQGPSEYPPISHAVMFGLMVSELVFAFAVGVSCLVLSLQLVRKLHEGEATALQQRPYAPPTATPKRGRYAPM 664
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8592.16553.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKU2_ECTSI2.510e-3069.32Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z1J8_9STRA1.170e-1441.82Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..80
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 81..107
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 108..179
NoneNo IPR availableTMHMMTMhelixcoord: 82..104

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8592contigH-paniculata_contig8592:7280..8252 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8592.16553.1mRNA_H-paniculata_contig8592.16553.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig8592 7280..8252 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig8592.16553.1 ID=prot_H-paniculata_contig8592.16553.1|Name=mRNA_H-paniculata_contig8592.16553.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=179bp
MGGGSGVDGANEEKEEGKEEEEEERLLVFSFYRAFDGESGSPVAHAEGNA
SSLAAAASVLLLLGDGPEGGNDFPPITHATLFVLMAIELAFSLAVGVSCL
VFSINLVKKLSDDDPHMVPTTAGTVTALSADYSNMNTNVNSNNNNNGRAN
MDSTRNFARRVGWVSGSGGGVVGKRPEYT
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