prot_H-paniculata_contig8548.16521.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig8548.16521.1
Unique Nameprot_H-paniculata_contig8548.16521.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length777
Homology
BLAST of mRNA_H-paniculata_contig8548.16521.1 vs. uniprot
Match: D7G8C1_ECTSI (Hypothetical leucine rich repeat zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C1_ECTSI)

HSP 1 Score: 244 bits (623), Expect = 3.290e-64
Identity = 252/767 (32.86%), Postives = 306/767 (39.90%), Query Frame = 0
Query:    9 ALTSLAVDGCHGLDGAFLERLAEGCPSLSSLSANDCTGFSD--------------------------SKVSSFLSESKALTSGELRRLGLGGCPIGALTCQALMLRGGFLNSLCLDGCSTLGDAAVRMICRACPRLSELSLLRCSMLTCRGAWHCTQHPSVETLFITLCLLPGADLVPPEEVKTRGSRSATRAAAXXXXXXXPPARNVAAAGCSAEDRTDDGSAVADRRMTAAVPGSGCEQWACGRCTLFNSERRSVCQACRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTYSRSPGGHRG-RRRRGRQI----------AAANASQEASLSPLALPTIPPSGPLRRLRLDLTPAAXXXXXXXXXXXASVSIAPRAVPQATGDTATRNVGLEEEHGHEGATGAAGTVSAGGNSSTAAIATVVSLPLRRLAPLLPPSLKALDVRSCNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPAAEWGYSYDGSYSAVAKGGGS--AGLGGVYDNGGERAPAFESEGGEDVGHAPGSGGGGSRSAYWGAGVDIAVAPGDLSALLEACPVLQDLVICGNPDPRAAWASIGPRIRGRGSEASRMTVSAGVHATAAAIAYILR----APAAITTCDTLAMKPTSTVAVA---------ATATAAAVSRPDSRAGSTLRALTLMDCPALPPMAILEALSVVLKVDSGGGGGVGDREGNLEHVALGYSSAPPAELSPADGAASTRYDGGSD 723
            AL  L V G  GL    L+ LA  CP+LS+L                                    + VS+F+ ES+A+ SG L  L LGGCPIG+LT QAL++RG  L  L LDGCS  GDAAVRM+CRACP L ELSLL CS LT RGAWHC QHPSVETL ITL LLPG + +PP   K R                               D   +  A A  R    V G+  EQWAC RCTL N+ERRS CQACR                                                     SPG   G RRRRGR            AA         +P  LP +PPSG LRRL L+L PAA                                +G  ++ G        G  S   N ++ A A   + PLRRLAPLLPP L +L+V S N                                   A    W  +     SA A G G   AG+ G                          G     S    +GV +   PGDL ++ +A P LQ+LV+ G+P+  AA A   P    RG++A   T +AGVHATAAAIAY L     AP                             ++  +A  +RP     S LR L + DCP++PPMA+LEAL+V      GG G        L+HVA+G S  P A       AA   +  G D
Sbjct:   81 ALRVLDVGGSEGLSDGILKALAGRCPALSTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAVSNFIMESEAVASGSLHSLRLGGCPIGSLTAQALLMRGSCLLELNLDGCSGFGDAAVRMVCRACPGLLELSLLGCSTLTSRGAWHCAQHPSVETLAITLSLLPGPEPIPPAPEKPRXXXXXXXXXHRGDQQH--------------RDAEGEARAAAGVRNGEGVAGAAAEQWACSRCTLLNAERRSTCQACRTPRSTREPPTPPPRPGTSPPASGPLPV--------------------------SPGSSNGGRRRRGRSPSGSPSRSRSPAARKTPTTPECAPFPLPAVPPSGRLRRLCLELQPAAAG-----------------------------GLGAVQDDG-------GGVRSNPSNRASPAAAARCAFPLRRLAPLLPPGLTSLEVWSANARPVPRSVQRDATSGDRKRPIGRRLGRRGGSSSGGA----WRMT-----SAAADGDGETPAGIEGAXXXXXXXXXXXXXXXXXXXXXXXXXG---DASEGVASGVAVLAGPGDLLSVSQASPSLQELVVSGDPEQAAAAAGQSPS-GVRGADAHTTTATAGVHATAAAIAYFLSCLGSAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXFSSFDSAGTTRPSPP--SPLRLLAIFDCPSVPPMAVLEALAV-----QGGAG--------LDHVAVGVSHPPQARAREGVDAAGLGFGLGDD 743          
BLAST of mRNA_H-paniculata_contig8548.16521.1 vs. uniprot
Match: A0A835Z4Z5_9STRA (RanBP2-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4Z5_9STRA)

HSP 1 Score: 106 bits (265), Expect = 6.020e-20
Identity = 84/265 (31.70%), Postives = 115/265 (43.40%), Query Frame = 0
Query:    1 QALAGRSPALTSLAVDGCHGLDGAFLERLAEGCPSLSSLSANDCTGFSDSKVSSFLSESK--------ALTSG--------------ELRRLGLGGCPIGALTCQALMLRGGFLNSLCLDGCSTLGDAAVRMICRACPRLSELSLLRCSMLTCRGAWHCTQHPSVETLFITLCLLPGADLVPPEEVKTRGSRSATRAAAXXXXXXXPPARNVAAAGCSAEDRTDDGSAVADRRMTAAVPGSGCEQWACGRCTLFNSERRSVCQAC 243
            +AL  R+  L SL +  C  L GAFLERLA+ CP L SLS + C   +D  + +F             AL S                L  L L  C +G LT QAL  RG  L SL LDGC+ + DAA+R++ R  P+L   S++ C  LT  GAW    HP++E+  + L L  GA  +P       GS +A                                +A A++ +           W C +CTLFN+   + C+AC
Sbjct:  151 KALQKRNHGLESLHLVDCADLTGAFLERLADCCPLLWSLSTSGCAKVTDQSLQAFFQNCSTAVRHPPAALLSAAAAHCPRPLSPSMQHLCALDLSRCGVGGLTAQALGARGAGLQSLTLDGCAGVTDAALRLVLRGTPQLRRASVIGCGALTPSGAWRLVAHPTLESAALQLALRAGAQPLP----HAAGSAAA--------------------------------AAAAEQAL----------HWVCLQCTLFNAMEAAACEAC 369          
BLAST of mRNA_H-paniculata_contig8548.16521.1 vs. uniprot
Match: A0A6H5JVX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVX9_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 2.900e-9
Identity = 66/177 (37.29%), Postives = 89/177 (50.28%), Query Frame = 0
Query:  540 GVDIAVAPGDLSALLEACPVLQDLVICGNPDPRAAWASIGPRIRG-RGSEASRMTVSAGVHATAAAIAYILR----APAAITTCDTLAMKPTSTVAVA-------ATATAAAVSRPDSRAGSTLRALTLMDCPALPPMAILEALSVVLKVDSGGGGGVGDREGNLEHVALGYSSAPP 704
            GV +   PGDL ++ +A P LQ+LV+ G+P+  AA    GP   G RG++A     +AGVHATAAAIA+ L     AP                           +   + A +RP     S LR L + DCP++PPMA+LEAL+V      GG G        L+HVA+G S +PP
Sbjct:   53 GVVVLAGPGDLLSVSQASPSLQELVVSGDPEQAAA---AGPSPSGVRGADAHTTMATAGVHATAAAIAFFLSCLGSAPXXXXXXXXXXXXXXXXXXXXXXXXXRFSRFDSPATTRPSPP--SPLRLLAIFDCPSVPPMAVLEALAV-----QGGAG--------LDHVAVGVSKSPP 211          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8548.16521.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G8C1_ECTSI3.290e-6432.86Hypothetical leucine rich repeat zinc finger prote... [more]
A0A835Z4Z5_9STRA6.020e-2031.70RanBP2-type domain-containing protein n=1 Tax=Trib... [more]
A0A6H5JVX9_9PHAE2.900e-937.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006553Leucine-rich repeat, cysteine-containing subtypeSMARTSM00367LRR_CC_2coord: 115..140
e-value: 13.0
score: 13.7
coord: 64..88
e-value: 150.0
score: 5.4
coord: 33..58
e-value: 170.0
score: 5.0
coord: 7..32
e-value: 540.0
score: 1.0
coord: 89..114
e-value: 180.0
score: 4.7
IPR001876Zinc finger, RanBP2-typeSMARTSM00547zf_4coord: 222..246
e-value: 1.7E-4
score: 30.9
IPR001876Zinc finger, RanBP2-typePROSITEPS01358ZF_RANBP2_1coord: 224..243
IPR001876Zinc finger, RanBP2-typePROSITEPS50199ZF_RANBP2_2coord: 218..249
score: 8.773
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..159
e-value: 4.8E-19
score: 70.5
NoneNo IPR availablePANTHERPTHR13382MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR Bcoord: 3..151
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 4..568
IPR036443Zinc finger, RanBP2-type superfamilySUPERFAMILY90209Ran binding protein zinc finger-likecoord: 222..247

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8548contigH-paniculata_contig8548:821..5999 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8548.16521.1mRNA_H-paniculata_contig8548.16521.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig8548 821..6001 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig8548.16521.1 ID=prot_H-paniculata_contig8548.16521.1|Name=mRNA_H-paniculata_contig8548.16521.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=777bp
QALAGRSPALTSLAVDGCHGLDGAFLERLAEGCPSLSSLSANDCTGFSDS
KVSSFLSESKALTSGELRRLGLGGCPIGALTCQALMLRGGFLNSLCLDGC
STLGDAAVRMICRACPRLSELSLLRCSMLTCRGAWHCTQHPSVETLFITL
CLLPGADLVPPEEVKTRGSRSATRAAATAATAAAPPARNVAAAGCSAEDR
TDDGSAVADRRMTAAVPGSGCEQWACGRCTLFNSERRSVCQACRTSRDTT
PPFPPVCDVVDLSPRPSPPSSPRSLPSTPLSPQSPSRNSDPNDTYSRSPG
GHRGRRRRGRQIAAANASQEASLSPLALPTIPPSGPLRRLRLDLTPAAAA
AAAGGVAAAASVSIAPRAVPQATGDTATRNVGLEEEHGHEGATGAAGTVS
AGGNSSTAAIATVVSLPLRRLAPLLPPSLKALDVRSCNAPSPPPPPPLPP
LESQNRSTASGGQINGAAGVAGVAPAAEWGYSYDGSYSAVAKGGGSAGLG
GVYDNGGERAPAFESEGGEDVGHAPGSGGGGSRSAYWGAGVDIAVAPGDL
SALLEACPVLQDLVICGNPDPRAAWASIGPRIRGRGSEASRMTVSAGVHA
TAAAIAYILRAPAAITTCDTLAMKPTSTVAVAATATAAAVSRPDSRAGST
LRALTLMDCPALPPMAILEALSVVLKVDSGGGGGVGDREGNLEHVALGYS
SAPPAELSPADGAASTRYDGGSDYLRRRRAPPPPPPVAVSHAVGHLGDDA
GEGLDSSRNRASIEGEPAGVFSASGGE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006553Leu-rich_rpt_Cys-con_subtyp
IPR001876Znf_RanBP2
IPR032675LRR_dom_sf
IPR036443Znf_RanBP2_sf