prot_H-paniculata_contig8384.16394.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig8384.16394.1
Unique Nameprot_H-paniculata_contig8384.16394.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length106
Homology
BLAST of mRNA_H-paniculata_contig8384.16394.1 vs. uniprot
Match: D7FVV5_ECTSI (Transcription elongation factor 1 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVV5_ECTSI)

HSP 1 Score: 185 bits (470), Expect = 4.460e-59
Identity = 88/105 (83.81%), Postives = 95/105 (90.48%), Query Frame = 0
Query:    1 MGRRKKSTKKIKVKKDTTLDTVFKCPFCNHDKVVECTMNRKESTARLLCRMCDINYEMQINYLTEPIDVYTDWIDECEAVNAVEGEGEERKDDDAFIDNLELAEG 105
            MGRRKKSTKKI VKK+TTLD VFKCPFCNHDKVVECTMN+KE TARLLCRMCD+NYEM INYLTEPIDVYTDWIDECEAVNAV+   EE KDD+ FID+ E+AEG
Sbjct:    1 MGRRKKSTKKIVVKKNTTLDKVFKCPFCNHDKVVECTMNKKEKTARLLCRMCDVNYEMTINYLTEPIDVYTDWIDECEAVNAVDAAAEEHKDDEQFIDDQEIAEG 105          
BLAST of mRNA_H-paniculata_contig8384.16394.1 vs. uniprot
Match: A0A329SPD8_9STRA (Transcription elongation factor 1 homolog n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SPD8_9STRA)

HSP 1 Score: 113 bits (283), Expect = 2.630e-30
Identity = 50/82 (60.98%), Postives = 65/82 (79.27%), Query Frame = 0
Query:    1 MGRRKKSTKKIKVKKDTTLDTVFKCPFCNHDKVVECTMNRKESTARLLCRMCDINYEMQINYLTEPIDVYTDWIDECEAVNA 82
            MGRRKKSTKKI+ +K   + TVFKCPFC+HD+ VEC M+R+ +   L CR+C  +++  I+YL+ PIDVYTDWIDECEA+NA
Sbjct:   46 MGRRKKSTKKIQTRKKQVVSTVFKCPFCSHDEAVECKMDRERNIGHLSCRVCTESFQTPIHYLSAPIDVYTDWIDECEALNA 127          
BLAST of mRNA_H-paniculata_contig8384.16394.1 vs. uniprot
Match: M4B5A6_HYAAE (Transcription elongation factor 1 homolog n=16 Tax=Oomycota TaxID=4762 RepID=M4B5A6_HYAAE)

HSP 1 Score: 112 bits (279), Expect = 2.900e-30
Identity = 48/82 (58.54%), Postives = 65/82 (79.27%), Query Frame = 0
Query:    1 MGRRKKSTKKIKVKKDTTLDTVFKCPFCNHDKVVECTMNRKESTARLLCRMCDINYEMQINYLTEPIDVYTDWIDECEAVNA 82
            MGRRKK+TKK++ +K   + TVFKCPFC+HD+ VEC M+R+ +   L CR+C  +++  I+YL+ PIDVYTDWIDECEA+NA
Sbjct:    1 MGRRKKATKKVQTRKKQAVSTVFKCPFCSHDEAVECKMDRERNIGHLSCRVCTESFQTPIHYLSAPIDVYTDWIDECEALNA 82          
BLAST of mRNA_H-paniculata_contig8384.16394.1 vs. uniprot
Match: A0A835ZFT2_9STRA (Transcription elongation factor 1 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFT2_9STRA)

HSP 1 Score: 112 bits (281), Expect = 4.200e-30
Identity = 54/86 (62.79%), Postives = 62/86 (72.09%), Query Frame = 0
Query:    1 MGRRKKSTKKIKVKKDTTLDTVFKCPFCNHDKVVECTMNRKESTARLLCRMCDINYEMQINYLTEPIDVYTDWIDECEAVNAVEGE 86
            MGRRK STKKI  KK  TLDT FKCPFC HDKVV+CTMN K++   L CR CD  Y   INYL+EPID++T+WID  EA +A   E
Sbjct:    1 MGRRKSSTKKISNKKRPTLDTSFKCPFCCHDKVVQCTMNFKDNVGTLQCRRCDTKYSTVINYLSEPIDIFTEWIDAAEAEHAANQE 86          
BLAST of mRNA_H-paniculata_contig8384.16394.1 vs. uniprot
Match: A0A6A3LNQ0_9STRA (Transcription elongation factor 1 homolog n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3LNQ0_9STRA)

HSP 1 Score: 112 bits (281), Expect = 6.300e-30
Identity = 50/82 (60.98%), Postives = 64/82 (78.05%), Query Frame = 0
Query:    1 MGRRKKSTKKIKVKKDTTLDTVFKCPFCNHDKVVECTMNRKESTARLLCRMCDINYEMQINYLTEPIDVYTDWIDECEAVNA 82
            MGRRKKSTKKI  +K   + TVFKCPFC+HD+ VEC M+R+ +   L CR+C  +++  I+YL+ PIDVYTDWIDECEA+NA
Sbjct:   52 MGRRKKSTKKISTRKKQIVSTVFKCPFCSHDEAVECKMDRERNIGHLSCRVCTESFQTPIHYLSAPIDVYTDWIDECEALNA 133          
BLAST of mRNA_H-paniculata_contig8384.16394.1 vs. uniprot
Match: A0A024U4B4_9STRA (Transcription elongation factor 1 homolog n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024U4B4_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.450e-28
Identity = 48/82 (58.54%), Postives = 61/82 (74.39%), Query Frame = 0
Query:    1 MGRRKKSTKKIKVKKDTTLDTVFKCPFCNHDKVVECTMNRKESTARLLCRMCDINYEMQINYLTEPIDVYTDWIDECEAVNA 82
            MGRRK STKKI  +K   +  VFKCPFC+HD  V+C M+R  +   L CR+C  +Y+  INYL+EPIDVYTDWIDECEA+++
Sbjct:    1 MGRRKTSTKKIVTRKKQVVARVFKCPFCSHDDSVQCKMDRDRNVGHLTCRICSESYQSNINYLSEPIDVYTDWIDECEALHS 82          
BLAST of mRNA_H-paniculata_contig8384.16394.1 vs. uniprot
Match: A0A485LI04_9STRA (Transcription elongation factor 1 homolog n=6 Tax=Saprolegniaceae TaxID=4764 RepID=A0A485LI04_9STRA)

HSP 1 Score: 107 bits (267), Expect = 2.060e-28
Identity = 48/84 (57.14%), Postives = 61/84 (72.62%), Query Frame = 0
Query:    1 MGRRKKSTKKIKVKKDTTLDTVFKCPFCNHDKVVECTMNRKESTARLLCRMCDINYEMQINYLTEPIDVYTDWIDECEAVNAVE 84
            MGRRK STKKI  +K   +  VFKCPFC+HD  V+C M+R  +   L CR+C  +Y+  INYL+EPIDVYTDWIDECEA++  +
Sbjct:    1 MGRRKTSTKKIVTRKKQVVARVFKCPFCSHDDSVQCKMDRDRNVGHLSCRVCSESYQTNINYLSEPIDVYTDWIDECEALHTAQ 84          
BLAST of mRNA_H-paniculata_contig8384.16394.1 vs. uniprot
Match: H3HB17_PHYRM (Uncharacterized protein n=15 Tax=Phytophthora TaxID=4783 RepID=H3HB17_PHYRM)

HSP 1 Score: 113 bits (283), Expect = 8.360e-28
Identity = 50/82 (60.98%), Postives = 65/82 (79.27%), Query Frame = 0
Query:    1 MGRRKKSTKKIKVKKDTTLDTVFKCPFCNHDKVVECTMNRKESTARLLCRMCDINYEMQINYLTEPIDVYTDWIDECEAVNA 82
            MGRRKKSTKKI+ +K   + TVFKCPFC+HD+ VEC M+R+ +   L CR+C  +++  I+YL+ PIDVYTDWIDECEA+NA
Sbjct:  310 MGRRKKSTKKIQTRKKQVVSTVFKCPFCSHDEAVECKMDRERNIGHLSCRVCTESFQTPIHYLSAPIDVYTDWIDECEALNA 391          
BLAST of mRNA_H-paniculata_contig8384.16394.1 vs. uniprot
Match: UPI001CC465E2 (transcription elongation factor 1 homolog n=2 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC465E2)

HSP 1 Score: 100 bits (250), Expect = 1.250e-25
Identity = 46/86 (53.49%), Postives = 59/86 (68.60%), Query Frame = 0
Query:    1 MGRRKKSTKKIKVKKDTTLDTVFKCPFCNHDKVVECTMNRKESTARLLCRMCDINYEMQINYLTEPIDVYTDWIDECEAVNAVEGE 86
            MG+RK S K    KK   L++VF CPFCNH+K V CT++RKE    L C +C   Y   IN L+EPID+Y++WIDECE VN ++GE
Sbjct:    1 MGKRKSSAKPAPKKKMEKLESVFNCPFCNHEKSVNCTIDRKEMIGELTCCICQEKYSTAINNLSEPIDIYSEWIDECEKVNDMDGE 86          
BLAST of mRNA_H-paniculata_contig8384.16394.1 vs. uniprot
Match: A0A0G4J6E9_PLABS (Transcription elongation factor 1 homolog n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4J6E9_PLABS)

HSP 1 Score: 99.8 bits (247), Expect = 2.470e-25
Identity = 48/84 (57.14%), Postives = 56/84 (66.67%), Query Frame = 0
Query:    1 MGRRKKSTKKIKVKKDTTLDTVFKCPFCNHDKVVECTMNRKESTARLLCRMCDINYEMQINYLTEPIDVYTDWIDECEAVNAVE 84
            MG+RK S K++  K    L T F CPFCNH   VEC M R E+ A + CR+CD NY M IN LTEP+DVY +WIDECE  NA E
Sbjct:    1 MGKRK-SKKRVVRKVVDKLATAFDCPFCNHSLTVECKMKRSENVAEISCRICDANYRMPINSLTEPVDVYCEWIDECEQANAEE 83          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8384.16394.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVV5_ECTSI4.460e-5983.81Transcription elongation factor 1 homolog n=2 Tax=... [more]
A0A329SPD8_9STRA2.630e-3060.98Transcription elongation factor 1 homolog n=2 Tax=... [more]
M4B5A6_HYAAE2.900e-3058.54Transcription elongation factor 1 homolog n=16 Tax... [more]
A0A835ZFT2_9STRA4.200e-3062.79Transcription elongation factor 1 homolog n=1 Tax=... [more]
A0A6A3LNQ0_9STRA6.300e-3060.98Transcription elongation factor 1 homolog n=1 Tax=... [more]
A0A024U4B4_9STRA1.450e-2858.54Transcription elongation factor 1 homolog n=3 Tax=... [more]
A0A485LI04_9STRA2.060e-2857.14Transcription elongation factor 1 homolog n=6 Tax=... [more]
H3HB17_PHYRM8.360e-2860.98Uncharacterized protein n=15 Tax=Phytophthora TaxI... [more]
UPI001CC465E21.250e-2553.49transcription elongation factor 1 homolog n=2 Tax=... [more]
A0A0G4J6E9_PLABS2.470e-2557.14Transcription elongation factor 1 homolog n=1 Tax=... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038567Transcription elongation factor 1 superfamilyGENE3D2.20.25.190coord: 23..83
e-value: 1.0E-26
score: 94.6
IPR007808Transcription elongation factor 1PFAMPF05129Elf1coord: 2..78
e-value: 5.8E-29
score: 100.0
IPR007808Transcription elongation factor 1PANTHERPTHR20934UNCHARACTERIZEDcoord: 1..92
NoneNo IPR availableSUPERFAMILY57783Zinc beta-ribboncoord: 1..81

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8384contigH-paniculata_contig8384:2936..4970 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8384.16394.1mRNA_H-paniculata_contig8384.16394.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig8384 2595..5838 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig8384.16394.1 ID=prot_H-paniculata_contig8384.16394.1|Name=mRNA_H-paniculata_contig8384.16394.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=106bp
MGRRKKSTKKIKVKKDTTLDTVFKCPFCNHDKVVECTMNRKESTARLLCR
MCDINYEMQINYLTEPIDVYTDWIDECEAVNAVEGEGEERKDDDAFIDNL
ELAEG*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038567T_Elf1_sf
IPR007808Elf1