prot_H-paniculata_contig8357.16372.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig8357.16372.1
Unique Nameprot_H-paniculata_contig8357.16372.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length144
Homology
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BLAST of mRNA_H-paniculata_contig8357.16372.1 vs. uniprot
Match: A0A6H5JJG3_9PHAE (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJG3_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 2.470e-28
Identity = 55/105 (52.38%), Postives = 72/105 (68.57%), Query Frame = 0 
Query:   20 GRRAQAVAGAQKRNAGGAPMMPIDQNKPHLFSRIAGQESEGWEGIMLVTYVASAAVLLIGVGMGPETSIKQWARDEALARDIRESQGKAVEYGKIYSQDQPQFFY 124
            GRR  A + +       + + P+DQNK +  +     + EGWEGIM  T+VASA +L+ GVG GPET IK+WARDEALAR++RE QG  VEYGKIYSQ QP++ +
Sbjct:   14 GRRVAATSASAGARRSASNLKPVDQNKAYFLNLGPHYKKEGWEGIMAATWVASAVILIAGVGYGPETGIKEWARDEALARNVREEQGLPVEYGKIYSQ-QPRYTF 117
[Close]
BLAST of mRNA_H-paniculata_contig8357.16372.1 vs. uniprot
Match: A0A7S2SPP1_9STRA (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SPP1_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 3.970e-6
Identity = 29/72 (40.28%), Postives = 42/72 (58.33%), Query Frame = 0 
Query:   56 QESEGWEGIMLVTYVASAAVLLIGVGMGPETSIKQWARDEALARDIRESQGKAVEYGKIYSQDQ-PQFFYEE 126
            ++ E WE I   T V     L +G+   P TSI+QWA+ EALAR++    G  VE G+ Y+Q+  P  F+E+
Sbjct:   50 RKRESWELIYHGTMVGGLIFLAVGLYYKPNTSIRQWAKQEALARELIVEAGGEVELGRNYAQEAIPGRFFEK 121
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8357.16372.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JJG3_9PHAE2.470e-2852.38NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
A0A7S2SPP1_9STRA3.970e-640.28NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..63
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 84..143
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 64..83

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8357contigH-paniculata_contig8357:1202..7932 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8357.16372.1mRNA_H-paniculata_contig8357.16372.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig8357 1085..8298 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig8357.16372.1 ID=prot_H-paniculata_contig8357.16372.1|Name=mRNA_H-paniculata_contig8357.16372.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=144bp
MSGTGKVFGRAAMAARRVTGRRAQAVAGAQKRNAGGAPMMPIDQNKPHLF
SRIAGQESEGWEGIMLVTYVASAAVLLIGVGMGPETSIKQWARDEALARD
IRESQGKAVEYGKIYSQDQPQFFYEEEQEEDEDEEEEDEDDDE*
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