prot_H-paniculata_contig8257.16277.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig8257.16277.1
Unique Nameprot_H-paniculata_contig8257.16277.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length228
Homology
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BLAST of mRNA_H-paniculata_contig8257.16277.1 vs. uniprot
Match: D8LNW7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNW7_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 4.740e-17
Identity = 63/211 (29.86%), Postives = 105/211 (49.76%), Query Frame = 0 
Query:    7 YHLVDSRGSANGPE-DASAGSRRKWWWQSGPVESCCFCFSLRTGVILLALHMIF-KGLFLV-----EMLPILRSLNAFNEAIYDEGCLDTVVMAGVDCAHLRANMDKQNEIVAQLEPKELYLTIWGTLSSLFGIVGISAACTGRARRAKVFMFA----FPVLLLADQVL--------LSDSMKVEQIWKFVLNFVEFMYYFKVAWSFYKRL 198
            Y  V+     +G   +   G RR+WWWQ GPV+SCCFC SLR GV +LA + +F  G++        +  +L +     +++YD+ C D  V    DC  L  N+++    V   +   + + +   ++ L G VG+ A     A  AK++++     F V L+A   L        + +S     +   +++ V F+Y+ KVAWSF++RL
Sbjct:    5 YRQVEQEEPVDGARFNGEGGVRRQWWWQPGPVDSCCFCCSLRAGVGILAANDLFLNGIWSTFYSRSHIEKMLHAAIEILQSVYDKDCKDAPVQTE-DCLQLSHNIEQAEFEVELFDNLPVIVYVEAIIAMLAGAVGLFAVFKSNALSAKIYLWMWLPRFFVGLVAKYTLRAVMKQYGIDNSDGPGVVIGHLVDVVVFLYFVKVAWSFHQRL 214
[Close]
BLAST of mRNA_H-paniculata_contig8257.16277.1 vs. uniprot
Match: D8LNW6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNW6_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 8.960e-9
Identity = 61/216 (28.24%), Postives = 100/216 (46.30%), Query Frame = 0 
Query:    1 MSERARYHLVDSRGSANGPEDASAGSRRKWWWQSGPVESCCFCFSLRTGV-ILLALHMIFKG---LFLVEMLPI---LRSLNAFNEAIYDEGCLDTVVMAGVDC---AHLRANMDKQNEIVAQLEPKELYLTIWGTLSSLFGIVGISAACTGRARRAKVFMFAFPVLLLADQV-LLSDSMKVEQ-----IWKFVL-----NFVEFMYYFKVAWSFY 195
            + ER R++ V              G R+ WWWQ GPV+S    FSL  GV +L AL +I  G   L+ V  +     L+ L A  E  Y E C D V  A  DC   A +  +++K N++            + G ++++FG VG+ A     A  A+ +++++P  ++   V L+   ++ E+     +W F +       +   Y  KVAWS++
Sbjct:   24 LGERVRFNGV-------------GGVRKDWWWQPGPVDSXXXXFSLAAGVAVLAALDIIVLGAMRLYYVSFVTGDAGLKQLLAGFEKKYAEECED-VAEASADCLAQASIILSLNKTNDLYVPA-------VLQGVIAAIFGFVGLRAVFAHDALAARAYLWSWPPRIVLTLVELVMQRIRFERYDMGFLWGFTVVWNIPRVLILAYCLKVAWSYW 218
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8257.16277.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LNW7_ECTSI4.740e-1729.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LNW6_ECTSI8.960e-928.24Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 37..59
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..36
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 147..165
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 141..146
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 177..195
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 60..118
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 196..227
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 119..140
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 166..176
NoneNo IPR availableTMHMMTMhelixcoord: 120..142
NoneNo IPR availableTMHMMTMhelixcoord: 49..71

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8257contigH-paniculata_contig8257:3416..9584 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8257.16277.1mRNA_H-paniculata_contig8257.16277.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig8257 1849..9977 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig8257.16277.1 ID=prot_H-paniculata_contig8257.16277.1|Name=mRNA_H-paniculata_contig8257.16277.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=228bp
MSERARYHLVDSRGSANGPEDASAGSRRKWWWQSGPVESCCFCFSLRTGV
ILLALHMIFKGLFLVEMLPILRSLNAFNEAIYDEGCLDTVVMAGVDCAHL
RANMDKQNEIVAQLEPKELYLTIWGTLSSLFGIVGISAACTGRARRAKVF
MFAFPVLLLADQVLLSDSMKVEQIWKFVLNFVEFMYYFKVAWSFYKRLSV
FERRVAEEQSLLPNNANVQQTVMRQTV*
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