prot_H-paniculata_contig8244.16264.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig8244.16264.1
Unique Nameprot_H-paniculata_contig8244.16264.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length136
Homology
BLAST of mRNA_H-paniculata_contig8244.16264.1 vs. uniprot
Match: A0A6H5KWM4_9PHAE (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KWM4_9PHAE)

HSP 1 Score: 245 bits (626), Expect = 6.550e-82
Identity = 116/132 (87.88%), Postives = 126/132 (95.45%), Query Frame = 0
Query:    1 MPSEPQPKRNVYVGGLEEQVNEEILHAAFVPFGDIVEVNLPKDHVANTHRGFGFIEFEVEQDAKAAVENMDGAELYGKVLKVNAARPMKHKLGAHTAVWSADDWYKNTLVEGDDTAKMAADELDPADPLQPV 132
            M  E QPKRNVYVGGLEEQVNEEILHAAFVPFGDIVEVNLPKDHVANTHRGFGF+EFE+E+DAKAA++NMDGAELYGKVL+VNAA+PMKHKLGAHTAVWSADDWYKNTLVEGDDTAK+A DEL+PAD L+P 
Sbjct:    1 MTKEAQPKRNVYVGGLEEQVNEEILHAAFVPFGDIVEVNLPKDHVANTHRGFGFVEFELEEDAKAAIDNMDGAELYGKVLRVNAAKPMKHKLGAHTAVWSADDWYKNTLVEGDDTAKLAGDELEPADSLEPT 132          
BLAST of mRNA_H-paniculata_contig8244.16264.1 vs. uniprot
Match: A0A835Z2R3_9STRA (Peptidyl-prolyl cis-trans isomerase E n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2R3_9STRA)

HSP 1 Score: 174 bits (441), Expect = 1.050e-53
Identity = 80/127 (62.99%), Postives = 105/127 (82.68%), Query Frame = 0
Query:    7 PKRNVYVGGLEEQVNEEILHAAFVPFGDIVEVNLPKDHVANTHRGFGFIEFEVEQDAKAAVENMDGAELYGKVLKVNAARPMKHKLGAHTAVWSADDWYKNTLVEGDDTAKMAADELDPADPLQPVA 133
            P+  +YVGGLEE VNEE+LHAAF+PFGD+VEV +P++  + T+RGFGF+E+E E+DA AA+ENMDGAEL G+VL+VN A+P+KHKLGA  AVWSAD+W+KN + EGD+T  M AD++   D L+PVA
Sbjct:    7 PRCTLYVGGLEENVNEELLHAAFIPFGDLVEVQIPREWKSGTNRGFGFVEYEAEEDASAAMENMDGAELAGRVLRVNRAKPLKHKLGAARAVWSADEWFKN-MAEGDETINMTADDMPQPDALEPVA 132          
BLAST of mRNA_H-paniculata_contig8244.16264.1 vs. uniprot
Match: A0A7S2V6A5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6A5_9STRA)

HSP 1 Score: 157 bits (398), Expect = 3.330e-47
Identity = 76/130 (58.46%), Postives = 103/130 (79.23%), Query Frame = 0
Query:    5 PQPKRNVYVGGLEEQVNEEILHAAFVPFGDIVEVNLPKDHVANTHRGFGFIEFEVEQDAKAAVENMDGAELYGKVLKVNAARPMKHKLGAHTAVWSADDWYKNTLVEGDDTAKMAADE--LDPADPLQPV 132
            P  K+ VYVGGL+E+V EE+LHAAF+PFGDIVEVN+P+D   + +RGFGF++FE E+DA AA+ENMDGAEL+G+VL+ N ARP+KH+LGA   VWSA+DW+++ + +G+      ADE  +DPAD L P+
Sbjct:   10 PNKKKVVYVGGLDEKVVEEVLHAAFIPFGDIVEVNIPRDFQKDLNRGFGFVDFEDEKDASAAIENMDGAELFGRVLRCNLARPIKHRLGASKPVWSAEDWFQSNVKDGE------ADEENIDPADSLIPL 133          
BLAST of mRNA_H-paniculata_contig8244.16264.1 vs. uniprot
Match: I2CRH6_NANGC (RRM domain-containing protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CRH6_NANGC)

HSP 1 Score: 153 bits (386), Expect = 2.290e-45
Identity = 76/129 (58.91%), Postives = 97/129 (75.19%), Query Frame = 0
Query:    1 MPSEPQPKRN---VYVGGLEEQVNEEILHAAFVPFGDIVEVNLPKDHVANTHRGFGFIEFEVEQDAKAAVENMDGAELYGKVLKVNAARPMKHKLGAHTAVWSADDWYKNTLVEGDDTA-KMAADELDP 125
            M  +P+PK +   VYVGGL+EQ  EE+LHAAF+PFGDIVEVN+PKD   NT RGFGF+ FE  +DA AA++NM+GAEL G+VLK N ARPM+HKLGA+  VWS D+W+K+ L E  D   ++  +EL P
Sbjct:    1 MDPKPKPKADKSIVYVGGLDEQCTEEMLHAAFIPFGDIVEVNIPKDFKENTTRGFGFVHFESAEDAAAAIDNMEGAELLGRVLKCNVARPMQHKLGANKPVWSTDEWFKSQLAEDKDLGDQLEYEELVP 129          
BLAST of mRNA_H-paniculata_contig8244.16264.1 vs. uniprot
Match: A0A7S2H1G4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H1G4_9STRA)

HSP 1 Score: 147 bits (372), Expect = 4.320e-43
Identity = 70/125 (56.00%), Postives = 93/125 (74.40%), Query Frame = 0
Query:    8 KRNVYVGGLEEQVNEEILHAAFVPFGDIVEVNLPKDHVANTHRGFGFIEFEVEQDAKAAVENMDGAELYGKVLKVNAARPMKHKLGAHTAVWSADDWYKNTLVEGDDTAKMAADELDPADPLQPV 132
            KR++YVGGLEE+  EE+LHAAF+PFG++VEV +PKD   N +RGFGF+EF+ + DA  A++NMDG+EL G+VL+VN A+P+ HKLGA  AVWS+D+W+K  L E  D A    D  D  D L P+
Sbjct:    8 KRSLYVGGLEEEATEELLHAAFIPFGNVVEVQIPKDFKDNKNRGFGFVEFDNDADAAEAMDNMDGSELLGRVLRVNIAKPITHKLGASKAVWSSDEWFKQNLKEDQDLA----DAQDDTDSLVPM 128          
BLAST of mRNA_H-paniculata_contig8244.16264.1 vs. uniprot
Match: A0A7S2C0W9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C0W9_9STRA)

HSP 1 Score: 146 bits (369), Expect = 1.440e-42
Identity = 72/125 (57.60%), Postives = 94/125 (75.20%), Query Frame = 0
Query:    8 KRNVYVGGLEEQVNEEILHAAFVPFGDIVEVNLPKDHVANTHRGFGFIEFEVEQDAKAAVENMDGAELYGKVLKVNAARPMKHKLGAHTAVWSADDWYKNTLVEGDDTAKMAADELDPADPLQPV 132
            KR +YVGGLEEQV+EE+LHAAF+PFG+I EV +PKD   NT+RGFGFIE+  ++DA  A++NMDGAEL G+VL+VN A+PMK KLGA   VWS ++W +N+L E     +  AD  + AD L P+
Sbjct:   15 KRTLYVGGLEEQVDEELLHAAFIPFGNINEVQIPKDFKENTNRGFGFIEYTNDEDAAEAMDNMDGAELLGRVLRVNVAKPMKAKLGASKPVWSTEEWLQNSLKED----QALADAQEDADDLTPM 135          
BLAST of mRNA_H-paniculata_contig8244.16264.1 vs. uniprot
Match: A0A812XSP9_SYMMI (PPIE protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812XSP9_SYMMI)

HSP 1 Score: 134 bits (338), Expect = 2.250e-38
Identity = 65/103 (63.11%), Postives = 79/103 (76.70%), Query Frame = 0
Query:   11 VYVGGLEEQVNEEILHAAFVPFGDIVEVNLPKDHVANTHRGFGFIEFEVEQDAKAAVENMDGAELYGKVLKVNAARPMKHKLGAHTAVWSADDWYKNTLVEGD 113
            VYVGGL+  VNEE LHAAF+PFGDI EVN+PKD   N HRGFGF++FE  +DA AA+ENM+GAEL+GKVLK N A+PM  KL    AVW+A++W  N+L   D
Sbjct:    1 VYVGGLDSGVNEETLHAAFIPFGDIREVNIPKDFAENKHRGFGFVDFEDAEDAAAAIENMNGAELFGKVLKCNMAKPMT-KLQPGQAVWTAEEWLSNSLKTDD 102          
BLAST of mRNA_H-paniculata_contig8244.16264.1 vs. uniprot
Match: A0A397TW91_9GLOM (RRM domain-containing protein n=2 Tax=Gigaspora TaxID=4873 RepID=A0A397TW91_9GLOM)

HSP 1 Score: 135 bits (341), Expect = 3.340e-38
Identity = 69/129 (53.49%), Postives = 88/129 (68.22%), Query Frame = 0
Query:    8 KRNVYVGGLEEQVNEEILHAAFVPFGDIVEVNLPKDHVA-NTHRGFGFIEFEVEQDAKAAVENMDGAELYGKVLKVNAARPMKHKLGAHTAVWSADDWYKNTLVEGDDTAKMAADELDPADPLQPVAPN 135
            K  +YVGGL++QVNE+ILHAAF+PFGDIVE+ +P D  + N HRGFGFIEFE   DA+AA++NM+ +ELYGKV+KVN ARPM+ K G+  AVWS D W +   ++              ADP  P  PN
Sbjct:   11 KTTIYVGGLDDQVNEQILHAAFIPFGDIVEIQIPPDPASHNQHRGFGFIEFEEAADAQAAIDNMNLSELYGKVIKVNLARPMRIKEGSMRAVWSEDAWLQKYALQS-------------ADPTVPYDPN 126          
BLAST of mRNA_H-paniculata_contig8244.16264.1 vs. uniprot
Match: A0A5J4Y598_9CHLO (Peptidyl-prolyl cis-trans isomerase E-like n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y598_9CHLO)

HSP 1 Score: 135 bits (341), Expect = 4.110e-38
Identity = 70/139 (50.36%), Postives = 90/139 (64.75%), Query Frame = 0
Query:    7 PKRNVYVGGLEEQVNEEILHAAFVPFGDIVEVNLPKDHVANTHRGFGFIEFEVEQDAKAAVENMDGAELYGKVLKVNAARPMKHKLG----AHTAVWS-ADDWYKNTLVEGD----------DTAKMAADELDPADPLQ 130
            PK  +YVGGLEE VNE ILH+AF+PFGDI +VN+P DH    HRGFGFIE+E + DA  A++NM  AELYG+VL+ N A+PMK K G    +H AVW+ ADDWY+    E +             K  +++  P DP+Q
Sbjct:   20 PKTTLYVGGLEENVNEAILHSAFIPFGDIKDVNIPLDHATGKHRGFGFIEYEAKDDAADAIDNMHNAELYGRVLRTNYAQPMKIKGGDKGFSHQAVWADADDWYERAEAEQELEKLEDEKRLKEQKAVSEKYTPKDPMQ 158          
BLAST of mRNA_H-paniculata_contig8244.16264.1 vs. uniprot
Match: A0A397G7Y2_9GLOM (RRM domain-containing protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397G7Y2_9GLOM)

HSP 1 Score: 133 bits (334), Expect = 1.720e-37
Identity = 67/118 (56.78%), Postives = 88/118 (74.58%), Query Frame = 0
Query:    8 KRNVYVGGLEEQVNEEILHAAFVPFGDIVEVNLPKDHVA-NTHRGFGFIEFEVEQDAKAAVENMDGAELYGKVLKVNAARPMKHKLGAHTAVWSADDWYKNTLVEGDDTAKMAADELD 124
            K  +YVGGL++QVNE+ILHAAFVPFGDIVE+ +P D  + N HRGFGFIEFE   DA+ A++NM+ +ELYGKV+KVN ARPM+ K G+  AVWS D W +   ++  D  K++ DE +
Sbjct:   11 KTTIYVGGLDDQVNEKILHAAFVPFGDIVEIQIPPDPASHNQHRGFGFIEFEEAADAQEAIDNMNLSELYGKVIKVNLARPMRIKEGSVRAVWSEDAWLQKYALKSADP-KVSYDEYE 127          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8244.16264.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KWM4_9PHAE6.550e-8287.88RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835Z2R3_9STRA1.050e-5362.99Peptidyl-prolyl cis-trans isomerase E n=1 Tax=Trib... [more]
A0A7S2V6A5_9STRA3.330e-4758.46Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
I2CRH6_NANGC2.290e-4558.91RRM domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A7S2H1G4_9STRA4.320e-4356.00Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2C0W9_9STRA1.440e-4257.60Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A812XSP9_SYMMI2.250e-3863.11PPIE protein (Fragment) n=1 Tax=Symbiodinium micro... [more]
A0A397TW91_9GLOM3.340e-3853.49RRM domain-containing protein n=2 Tax=Gigaspora Ta... [more]
A0A5J4Y598_9CHLO4.110e-3850.36Peptidyl-prolyl cis-trans isomerase E-like n=1 Tax... [more]
A0A397G7Y2_9GLOM1.720e-3756.78RRM domain-containing protein n=1 Tax=Diversispora... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 10..83
e-value: 3.4E-23
score: 93.1
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 11..81
e-value: 5.1E-20
score: 71.1
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 9..87
score: 19.724
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..97
e-value: 8.8E-27
score: 95.7
NoneNo IPR availablePANTHERPTHR13798:SF11coord: 10..86
NoneNo IPR availablePANTHERPTHR13798RNA BINDING MOTIF RBM PROTEIN -RELATEDcoord: 10..86
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 3..90

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8244contigH-paniculata_contig8244:6234..10009 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8244.16264.1mRNA_H-paniculata_contig8244.16264.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig8244 5966..10046 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig8244.16264.1 ID=prot_H-paniculata_contig8244.16264.1|Name=mRNA_H-paniculata_contig8244.16264.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=136bp
MPSEPQPKRNVYVGGLEEQVNEEILHAAFVPFGDIVEVNLPKDHVANTHR
GFGFIEFEVEQDAKAAVENMDGAELYGKVLKVNAARPMKHKLGAHTAVWS
ADDWYKNTLVEGDDTAKMAADELDPADPLQPVAPN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf