prot_H-paniculata_contig8214.16238.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig8214.16238.1
Unique Nameprot_H-paniculata_contig8214.16238.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length461
Homology
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BLAST of mRNA_H-paniculata_contig8214.16238.1 vs. uniprot
Match: D7G0E7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0E7_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 2.180e-6
Identity = 29/48 (60.42%), Postives = 35/48 (72.92%), Query Frame = 0 
Query:  210 AERAMIEEGRRAAYNAAINVCGRAGRWDRALMLLEEMPAFGITPDVVS 257
            A R    +GR AA NAA+ +CG+AGRWD    LLEEMP++GI PDVVS
Sbjct:  424 AGRVAFPDGRGAASNAALTLCGKAGRWDPPRGLLEEMPSYGIMPDVVS 471
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BLAST of mRNA_H-paniculata_contig8214.16238.1 vs. uniprot
Match: A0A6H5KDP8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDP8_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 3.360e-5
Identity = 25/34 (73.53%), Postives = 28/34 (82.35%), Query Frame = 0 
Query:  428 KGPQATRPDIYSYNSAIAACGPGGHWQSARQLLE 461
            +GP+ TRPD YSYNSAIAACGPGG  + AR LLE
Sbjct:  177 RGPRITRPDHYSYNSAIAACGPGGEVEEARALLE 210
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8214.16238.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G0E7_ECTSI2.180e-660.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KDP8_9PHAE3.360e-573.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 12..38
e-value: 0.073
score: 13.3
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 222..255
e-value: 1.5E-8
score: 32.3
coord: 291..324
e-value: 2.3E-7
score: 28.5
coord: 365..399
e-value: 1.1E-4
score: 20.1
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 360..404
e-value: 3.2E-5
score: 23.9
coord: 278..335
e-value: 1.2E-7
score: 31.7
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 222..265
e-value: 2.4E-8
score: 34.0
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 289..323
score: 12.792
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 254..288
score: 8.791
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 363..398
score: 9.602
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 9..39
score: 8.013
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 399..429
score: 6.654
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 324..354
score: 7.18
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 219..253
score: 11.488
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 436..461
score: 7.848
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 357..461
e-value: 1.8E-22
score: 82.3
coord: 202..356
e-value: 4.5E-37
score: 130.2
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..148
e-value: 1.0E-8
score: 36.9
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 360..459
coord: 222..390

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8214contigH-paniculata_contig8214:725..9224 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8214.16238.1mRNA_H-paniculata_contig8214.16238.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig8214 725..9230 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig8214.16238.1 ID=prot_H-paniculata_contig8214.16238.1|Name=mRNA_H-paniculata_contig8214.16238.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=461bp
MRQDGVQPSPKAYTTAINACSRTADWKRALVVLVEMRKAFPPRRRSLVTA
KRAAAETRRIDTSEMARTGMSEVPRYATTWASLTQEKGKEQEERLSSPAV
TETERRRGRAEKSQDEVNGDSGHHHHHQQQQQQQQPHQVPSPLEGSTTIS
SFTSTITTTPAESALTDSVAEGLSGHQRRGNSSSSTSRGRGGGEDDRNRG
DGEDWRARKAERAMIEEGRRAAYNAAINVCGRAGRWDRALMLLEEMPAFG
ITPDVVSYNSAICACGYRARWERATGLLAEAWLAGLKPDCYTYSSAIHAC
AGAGRWEEAMSLLREMGRVGLRPSVVAYGAAMSALANGKQWEQALALLDE
VNSQPQGSPLKPNAVLYGAVIRACSTAGKWRLALELLEKMTRISGVKPSL
VCFNGALHGMAAAGEAKRARQLLDAMHKGPQATRPDIYSYNSAIAACGPG
GHWQSARQLLE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf