prot_H-paniculata_contig8201.16226.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig8201.16226.1
Unique Nameprot_H-paniculata_contig8201.16226.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length374
Homology
BLAST of mRNA_H-paniculata_contig8201.16226.1 vs. uniprot
Match: D7G219_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G219_ECTSI)

HSP 1 Score: 396 bits (1018), Expect = 1.110e-121
Identity = 218/377 (57.82%), Postives = 280/377 (74.27%), Query Frame = 0
Query:    2 VLREQARERERLSRAIRRMFEAEVSKRRTFAKVALQGKAEAEGLAAIRRDDACEGLECKTEEEKLQEEQDHALLEQAIRQA-------TAKKSMAATAEVVGRAGKNTEEPMSALVIPRGEVVLEELSVSQDKATDALQLWDFLHCFGESLAEAGFSPERSPSLKCLAQALISVNEIAAATSEDSGENDNGDGAQERGLERREAVKLLSGIAAALAGLATPAAVRTLGMTAVEAGDPALVGPLCGPFGWAEMARTALSLHALREIGRDDKDLQPLTLGGGCNPLNNKDPKAMMTEADRKTIKLVKLRLEHRWQRSHSPMRSSKSPGEQAAALSAASVHTCPYDGLAALRLRVFTPGKAWCGKGDWRFHLMNVAELDP 371
            VLREQARE+ERLSRA+RR+FEAEVSKRRTFA+  LQ +A+AEG+AAI RDDACEGLEC+TEE++  E++DH +L+ A+  A       +   +  A++  + +A        S      G+VVLEEL +SQ +  + LQLWDFL+CF E L+EAGF+P R PSLK LAQAL +V+ +     +D  ++D+          RR+AV LLSG+AAALAGLATP+AV++LGMT VEA DP L+G L GPF WAEMARTALSLHALRE+GRDDKDLQPL LGGG NP+NNKDPKAM+TEADRKT+KL+++RL+ R++ + +  + +  P   AAA + A+VHTCPY    ALR RV+TPG+AWC +GDWRFHL++V ELDP
Sbjct:   84 VLREQAREKERLSRALRRLFEAEVSKRRTFARQTLQTRADAEGMAAILRDDACEGLECRTEEQQAAEDRDHDILQAALASARGTVPRGSGSSTKGASSSALPKAEAGASSTSSGGARLGGQVVLEELGLSQQQVANLLQLWDFLYCFREPLSEAGFTPARPPSLKRLAQALHAVDGVCRGEDKDGQDDDSS-------KRRRDAVALLSGMAAALAGLATPSAVKSLGMTNVEAADPLLIGALHGPFAWAEMARTALSLHALREVGRDDKDLQPLLLGGGVNPVNNKDPKAMLTEADRKTVKLIRMRLDQRFEAA-AARQGTSGPATPAAA-NVATVHTCPYSSAGALRTRVYTPGQAWCERGDWRFHLLSVTELDP 451          
BLAST of mRNA_H-paniculata_contig8201.16226.1 vs. uniprot
Match: A0A6H5KV10_9PHAE (Bromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV10_9PHAE)

HSP 1 Score: 396 bits (1017), Expect = 2.650e-121
Identity = 221/377 (58.62%), Postives = 280/377 (74.27%), Query Frame = 0
Query:    2 VLREQARERERLSRAIRRMFEAEVSKRRTFAKVALQGKAEAEGLAAIRRDDACEGLECKTEEEKLQEEQDHALLEQAIRQA-------TAKKSMAATAEVVGRAGKNTEEPMSALVIPRGEVVLEELSVSQDKATDALQLWDFLHCFGESLAEAGFSPERSPSLKCLAQALISVNEIAAATSEDSGENDNGDGAQERGLERREAVKLLSGIAAALAGLATPAAVRTLGMTAVEAGDPALVGPLCGPFGWAEMARTALSLHALREIGRDDKDLQPLTLGGGCNPLNNKDPKAMMTEADRKTIKLVKLRLEHRWQRSHSPMRSSKSPGEQAAALSAASVHTCPYDGLAALRLRVFTPGKAWCGKGDWRFHLMNVAELDP 371
            VLREQARE+ERLSRA+RR+FEAEVSKRRTFA+  LQ +A+AEG+AAI RDDACEGLEC+TEE++  E++DH  L+ A+  A       +   S  A++  + +A               G+VVLEEL +SQ++  + LQLWDFL+CF E L+EAGF+P R PSLK LAQAL +V+ +     +D G++D+          RR+AV LLSG+AAALAGLATP+AV++LGMT VEA DP L+G L GPF WAEMARTALSLHALRE+GRDDKDLQPL LGGG NP+NNKDPKAM+TEADRKT+KLV++RLE R++ + +  + +  P   AAA + A+VHTCPY    ALR RV+TPG+AWC +GDWRFHL++V ELDP
Sbjct:   51 VLREQAREKERLSRALRRLFEAEVSKRRTFARQTLQTRADAEGMAAILRDDACEGLECRTEEQQAAEDRDHDTLQAALANARGTAPRGSGSSSQGASSSALHKAEAGASPTSGGGARLGGQVVLEELDLSQEQVANLLQLWDFLYCFREPLSEAGFTPTRPPSLKRLAQALHAVDGVCRGEDKD-GQDDHSS------KRRRDAVALLSGMAAALAGLATPSAVKSLGMTNVEASDPLLIGALHGPFAWAEMARTALSLHALREVGRDDKDLQPLLLGGGVNPVNNKDPKAMLTEADRKTVKLVRMRLEQRFEAA-AARKGTSGPATPAAA-NVATVHTCPYSSAGALRTRVYTPGQAWCERGDWRFHLLSVTELDP 418          
BLAST of mRNA_H-paniculata_contig8201.16226.1 vs. uniprot
Match: A0A836CHE5_9STRA (PHD-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHE5_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 2.240e-7
Identity = 68/215 (31.63%), Postives = 90/215 (41.86%), Query Frame = 0
Query:  118 LEELSVSQDKATDALQLWDFLHCFGESLAEAGFSPERSPSLKCLAQALISVNEI-------AAATSEDSGENDNGDGAQERGLERREAVKLLSGIAAALAGLATPAAVRTLGMT-AVEAGDP---------ALVGPLCGPFGWAEMARTALSLHALREIGRDDKDLQ----------PLTLGGGCNPLNNKDPKAMMTEADRKTIKLVKLRLEHR 305
            L  L +  D     LQLWDFLH F   L  A     R+PSL  LA AL   + +       AAA S      D       RG+      +LL  +AA L  L T   +  LG   A+E G+           L   L G   W E+AR AL  HA RE+G DD+++           P+   G           A+   ADR+ ++L+ LR+ HR
Sbjct:  824 LRALGLDADLTGAVLQLWDFLHAFRAPLRLA-----RAPSLAALAGALADADALDRRVRSGAAAGSAXXXXXDRA----ARGM------RLLHALAARLVALLTQPLLACLGFAMALEPGEEDTGAEPRGVRLAQQLTGWLTWEEVARLALQAHAHRELGADDREIPQRLLSRPPPAPIHFAGASALPAIAAAAAVTATADRRVLRLLALRVAHR 1023          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8201.16226.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G219_ECTSI1.110e-12157.82Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KV10_9PHAE2.650e-12158.62Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A836CHE5_9STRA2.240e-731.63PHD-type domain-containing protein n=1 Tax=Tribone... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 65..85
NoneNo IPR availableCOILSCoilCoilcoord: 3..23

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8201contigH-paniculata_contig8201:2224..10496 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8201.16226.1mRNA_H-paniculata_contig8201.16226.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig8201 2224..10496 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig8201.16226.1 ID=prot_H-paniculata_contig8201.16226.1|Name=mRNA_H-paniculata_contig8201.16226.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=374bp
QVLREQARERERLSRAIRRMFEAEVSKRRTFAKVALQGKAEAEGLAAIRR
DDACEGLECKTEEEKLQEEQDHALLEQAIRQATAKKSMAATAEVVGRAGK
NTEEPMSALVIPRGEVVLEELSVSQDKATDALQLWDFLHCFGESLAEAGF
SPERSPSLKCLAQALISVNEIAAATSEDSGENDNGDGAQERGLERREAVK
LLSGIAAALAGLATPAAVRTLGMTAVEAGDPALVGPLCGPFGWAEMARTA
LSLHALREIGRDDKDLQPLTLGGGCNPLNNKDPKAMMTEADRKTIKLVKL
RLEHRWQRSHSPMRSSKSPGEQAAALSAASVHTCPYDGLAALRLRVFTPG
KAWCGKGDWRFHLMNVAELDPRM*
back to top