prot_H-paniculata_contig8167.16191.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig8167.16191.1
Unique Nameprot_H-paniculata_contig8167.16191.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length342
Homology
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BLAST of mRNA_H-paniculata_contig8167.16191.1 vs. uniprot
Match: D8LR43_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LR43_ECTSI)

HSP 1 Score: 164 bits (415), Expect = 2.300e-44
Identity = 189/319 (59.25%), Postives = 229/319 (71.79%), Query Frame = 0 
Query:   22 ETCCSTNADCLALVDEGQMQYLGRYEKDLVCDPACPGAMNCNMFGVCPGCRGCFMTCKGAVKYVDETSAIDDAVTFCSDGEVSHVSECYVVSDNQSGFGSXXXXXXXXXXXXXXXXXXXXXXSGVSWASXXXXXXXXXXXVXXXXXXXXXXXSMTIXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDVPGCSCDEAMLDPAEAAFFCDNNKSFYCDAECLPDSDPLDRLFYDMGGLWCQPFGWEGCRLCHLDCEDFGDKYCVPCPAGVQGWC 340
            ++CCS ++DC  L+    +++   + K + CD  CPG +NCNMFG+C  CRGCF TC+GA+ ++++T +  + +TFCS   ++ +++C    D+  G G+XXXXXXXXXXXXXXXXXXX              XXXXXXX XXXXXXXXXXX    XXXXXXXXXXXXXXXXXXXXXXXXX XX    XXXXXXXXXXXX     XXXXXXXXXXXXXXXXXXXXXXXXX   ++ GC C  A L+PA AA+FC+N KS YCD EC+  SDP D LF  MGGLWCQP GWEGCR+C  DC D+   +CVPCP+G++ WC
Sbjct:   25 QSCCSQDSDCTELLSPADIEHNSIFSKTVECDQDCPGLINCNMFGICEQCRGCFETCEGAMLFMEKTGSPAEYITFCSGIGIADMAQC---EDDVYGSGAXXXXXXXXXXXXXXXXXXXGGSE---------MXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVXXXXXXXXXXXXXXXXXXTGIASXXXXXXXXXXXXXXXXXXXXXXXXXRVAEIEGCDCGTAELEPAFAAYFCENGKSMYCDLECVDGSDPDDVLFPSMGGLWCQPEGWEGCRMCKFDCTDYEGDFCVPCPSGLKNWC 331
[Close]
BLAST of mRNA_H-paniculata_contig8167.16191.1 vs. uniprot
Match: D8LDU5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU5_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 1.580e-9
Identity = 38/113 (33.63%), Postives = 56/113 (49.56%), Query Frame = 0 
Query:    8 LVVAALRATNSRAQETCCSTNADCLALVDEGQMQYLGRYEKDLVCDPAC-----PGAMNCNMFGVCPGCRGCFMTCKGAVKYVDETS------AIDDAVTFCSDGEVSHVSEC 109
            ++ A L     +A+E   S+ +D          + L  Y+KDL  +P C     P  ++CN  G+   CRGCFMTC GA +Y+D+ +       +D  V FC D EV  + EC
Sbjct:   10 IIFAVLSFARVKAEECIVSSLSDAA-------QEQLSMYDKDLYLEPDCVNGASPMPVHCNYMGLGQECRGCFMTCDGATRYLDDFAEEISVWGVDAIVHFCPDAEVELLEEC 115
[Close]
BLAST of mRNA_H-paniculata_contig8167.16191.1 vs. uniprot
Match: D8LDU6_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU6_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 6.910e-6
Identity = 28/87 (32.18%), Postives = 45/87 (51.72%), Query Frame = 0 
Query:   35 VDEGQMQYLGRYEKDLVCDPAC-----PGAMNCNMFGVCPGCRGCFMTCKGAVKYVDETS------AIDDAVTFCSDGEVSHVSECY 110
            +++   Q L  Y+ D+  +  C     P  + CN  G+   CRGCF+TC GA+ Y+D+ +        D  + FC   EVS ++EC+
Sbjct:  589 LNDADQQQLALYDNDMYLEDDCVNDSTPLPLGCNYMGLGQECRGCFLTCAGALTYIDDKAEHILEYGEDAVINFCPQSEVSDLAECH 675
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8167.16191.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LR43_ECTSI2.300e-4459.25Uncharacterized protein n=3 Tax=Ectocarpus TaxID=2... [more]
D8LDU5_ECTSI1.580e-933.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LDU6_ECTSI6.910e-632.18N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..13
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..341
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..20
score: 0.805

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8167contigH-paniculata_contig8167:1937..8136 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8167.16191.1mRNA_H-paniculata_contig8167.16191.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig8167 1523..10251 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig8167.16191.1 ID=prot_H-paniculata_contig8167.16191.1|Name=mRNA_H-paniculata_contig8167.16191.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=342bp
MSMQWVLLVVAALRATNSRAQETCCSTNADCLALVDEGQMQYLGRYEKDL
VCDPACPGAMNCNMFGVCPGCRGCFMTCKGAVKYVDETSAIDDAVTFCSD
GEVSHVSECYVVSDNQSGFGSGSGSGSMGGAGSGNGSASGSGSSGVSWAS
GSGSGNGTSSMVAGGSGSASGGGSMTIGGGKGSASGSGSRGVGGGTSFSS
SEGSVRPSSAEGSASGEGSMAGDSTGKGSASGHGSFGSGRGSGSATGSGH
RGGGDVPGCSCDEAMLDPAEAAFFCDNNKSFYCDAECLPDSDPLDRLFYD
MGGLWCQPFGWEGCRLCHLDCEDFGDKYCVPCPAGVQGWCV*
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