prot_H-paniculata_contig81401.16162.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig81401.16162.1
Unique Nameprot_H-paniculata_contig81401.16162.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length97
Homology
BLAST of mRNA_H-paniculata_contig81401.16162.1 vs. uniprot
Match: W7T0T3_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T0T3_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.060e-18
Identity = 46/98 (46.94%), Postives = 63/98 (64.29%), Query Frame = 0
Query:    1 LRKSLYDLKQSGRNWNNTLDDFLVGIGLQRLTTNPCLYFSRTDGGETNNVVAVYVDNLVIVGR-REKVDEFKHDISQCFRIKDLGSLSRVLGIEVRRD 97
            LRKSLY LKQSGRNW+  +D +  G G    + +PCLY      GE   V+ +YVD+L+I    RE V++FKH IS+ F +KDL  L  +LG+ ++RD
Sbjct:  561 LRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEIL-VIVLYVDDLIITSNSREMVNKFKHAISREFSMKDLKELDWILGMAIKRD 657          
BLAST of mRNA_H-paniculata_contig81401.16162.1 vs. uniprot
Match: W7TCB8_9STRA (Gag-pol polyprotein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TCB8_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.590e-18
Identity = 46/98 (46.94%), Postives = 62/98 (63.27%), Query Frame = 0
Query:    1 LRKSLYDLKQSGRNWNNTLDDFLVGIGLQRLTTNPCLYFSRTDGGETNNVVAVYVDNLVIVGR-REKVDEFKHDISQCFRIKDLGSLSRVLGIEVRRD 97
            LRKSLY LKQSGRNW+  +D +  G G    + +PCLY      GE   V+ +YVD+L+I    RE V +FKH IS+ F +KDL  L  +LG+ ++RD
Sbjct:  121 LRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEIL-VIVLYVDDLIITSNSREMVGKFKHAISREFSMKDLKELDWILGMAIKRD 217          
BLAST of mRNA_H-paniculata_contig81401.16162.1 vs. uniprot
Match: W7TIV7_9STRA (Transposable element n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIV7_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 3.220e-18
Identity = 46/98 (46.94%), Postives = 60/98 (61.22%), Query Frame = 0
Query:    1 LRKSLYDLKQSGRNWNNTLDDFLVGIGLQRLTTNPCLYFSRTDGGETNNVVAVYVDNLVIVGR-REKVDEFKHDISQCFRIKDLGSLSRVLGIEVRRD 97
            LRKSLY LKQSGRNW+  +D +  G G    + +PCLY      GE   V+ +YVD+L+I    R+ VD FK  IS  F +KDL  L  +LGI ++RD
Sbjct:  183 LRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEIL-VIVLYVDDLIIASNSRDMVDNFKQAISMKFSMKDLKELDWILGIAIKRD 279          
BLAST of mRNA_H-paniculata_contig81401.16162.1 vs. uniprot
Match: W7TII5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TII5_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 5.450e-18
Identity = 44/98 (44.90%), Postives = 62/98 (63.27%), Query Frame = 0
Query:    1 LRKSLYDLKQSGRNWNNTLDDFLVGIGLQRLTTNPCLYFSRTDGGETNNVVAVYVDNLVIVGR-REKVDEFKHDISQCFRIKDLGSLSRVLGIEVRRD 97
            LRKSLY LKQSGRNW+  +D +  G G    + +PCLY      GE   V+ +YVD+L+I G  R+ VD+FK  IS+   +KDL  L  +LG+ ++R+
Sbjct:  121 LRKSLYGLKQSGRNWHKKIDGWFRGYGFHSSSADPCLYVKFGSSGEML-VIVLYVDDLIIAGNSRDMVDDFKQAISKEISMKDLKELDWILGMAIKRN 217          
BLAST of mRNA_H-paniculata_contig81401.16162.1 vs. uniprot
Match: W8BWJ0_CERCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Ceratitis capitata TaxID=7213 RepID=W8BWJ0_CERCA)

HSP 1 Score: 86.7 bits (213), Expect = 9.510e-18
Identity = 44/98 (44.90%), Postives = 63/98 (64.29%), Query Frame = 0
Query:    1 LRKSLYDLKQSGRNWNNTLDDFLVGIGLQRLTTNPCLYFSRTDGGETNNVVAVYVDNLVIVGRRE-KVDEFKHDISQCFRIKDLGSLSRVLGIEVRRD 97
            L+K++Y LKQSGR WNNTLD+ L  +G +R     CLY  +   G  ++ +AVYVD+L+I+   E ++   K  IS  F + D GSLS  LG+E++RD
Sbjct:  963 LKKAIYGLKQSGRAWNNTLDEVLQNMGFKRSKNEACLYVKQQQQG--SSYIAVYVDDLIIISPSENEICAIKRQISSKFEMHDSGSLSYFLGLEIQRD 1058          
BLAST of mRNA_H-paniculata_contig81401.16162.1 vs. uniprot
Match: W7TIM1_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIM1_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.280e-17
Identity = 45/98 (45.92%), Postives = 62/98 (63.27%), Query Frame = 0
Query:    1 LRKSLYDLKQSGRNWNNTLDDFLVGIGLQRLTTNPCLYFSRTDGGETNNVVAVYVDNLVIVGR-REKVDEFKHDISQCFRIKDLGSLSRVLGIEVRRD 97
            LRKSLY LKQSGRNW+  +D +  G G    + +PCLY      GE   V+ +YVD+L+I    RE VD+FK  IS+ F +KDL  L  +LG+ ++R+
Sbjct:  350 LRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEML-VIVLYVDDLIITSNSREMVDKFKQAISREFSMKDLKELDWILGMAIKRN 446          
BLAST of mRNA_H-paniculata_contig81401.16162.1 vs. uniprot
Match: A0A6S7HLY2_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HLY2_PARCT)

HSP 1 Score: 85.5 bits (210), Expect = 2.320e-17
Identity = 42/97 (43.30%), Postives = 63/97 (64.95%), Query Frame = 0
Query:    1 LRKSLYDLKQSGRNWNNTLDDFLVGIGLQRLTTNPCLYFSRTDGGETNNVVAVYVDNLVIVGRR-EKVDEFKHDISQCFRIKDLGSLSRVLGIEVRR 96
            L+KSLY LKQSGRNWN  LD++L+  G  R   + C+Y  +T  GE   +V ++VD+L+I     +K+ +FK ++   FR+KDLG +S  LGI  ++
Sbjct:  316 LKKSLYGLKQSGRNWNRVLDEYLISDGFIRNPVDHCVYQKQT--GEDIIIVVIWVDDLIIASSNTDKISQFKENMKSKFRMKDLGEISYFLGISFKQ 410          
BLAST of mRNA_H-paniculata_contig81401.16162.1 vs. uniprot
Match: A0A2Z7AL20_9LAMI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7AL20_9LAMI)

HSP 1 Score: 85.1 bits (209), Expect = 2.480e-17
Identity = 38/98 (38.78%), Postives = 66/98 (67.35%), Query Frame = 0
Query:    1 LRKSLYDLKQSGRNWNNTLDDFLVGIGLQRLTTNPCLYFSRTDGGETNNVVAVYVDNLVIVG-RREKVDEFKHDISQCFRIKDLGSLSRVLGIEVRRD 97
            L+KSLY LKQ+ R W    D +++ +G  RL+ +PC YF R+ GG    ++ +YVD++++ G  +++V E K  +++ F +KDLG  +++LG++V RD
Sbjct:  127 LKKSLYGLKQAPRCWYKRFDSYIMSLGYNRLSADPCTYFKRS-GGNDYIILLLYVDDMLVAGPNKDRVQELKAQLAREFDMKDLGPANKILGMQVHRD 223          
BLAST of mRNA_H-paniculata_contig81401.16162.1 vs. uniprot
Match: A0A7D9HG25_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HG25_PARCT)

HSP 1 Score: 85.1 bits (209), Expect = 2.850e-17
Identity = 42/97 (43.30%), Postives = 63/97 (64.95%), Query Frame = 0
Query:    1 LRKSLYDLKQSGRNWNNTLDDFLVGIGLQRLTTNPCLYFSRTDGGETNNVVAVYVDNLVIVGRR-EKVDEFKHDISQCFRIKDLGSLSRVLGIEVRR 96
            L+KSLY LKQSGRNWN  LD++L+  G  R   + C+Y  +T  GE   +V ++VD+L+I     +K+ +FK ++   FR+KDLG +S  LGI  ++
Sbjct:  291 LKKSLYGLKQSGRNWNRVLDEYLISDGFVRNPVDHCVYQKQT--GEDIIIVVIWVDDLIIASSNTDKIRQFKENMKSKFRMKDLGEISYFLGISFKQ 385          
BLAST of mRNA_H-paniculata_contig81401.16162.1 vs. uniprot
Match: W7TJ26_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ26_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 3.210e-17
Identity = 45/98 (45.92%), Postives = 61/98 (62.24%), Query Frame = 0
Query:    1 LRKSLYDLKQSGRNWNNTLDDFLVGIGLQRLTTNPCLYFSRTDGGETNNVVAVYVDNLVIVGR-REKVDEFKHDISQCFRIKDLGSLSRVLGIEVRRD 97
            LRKSLY LKQSGRNW+  +D +  G GL     +PCLY      GE   V+ +YVD+L+I    R   D+FK DIS+ F +KDL  L  +LG+ ++R+
Sbjct:  341 LRKSLYGLKQSGRNWHKKIDGWFRGYGLHPSYADPCLYVKFASSGEIL-VIVLYVDDLIIGSNSRTMTDKFKQDISREFSMKDLKELDWILGMGIKRN 437          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig81401.16162.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7T0T3_9STRA1.060e-1846.94Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
W7TCB8_9STRA1.590e-1846.94Gag-pol polyprotein n=3 Tax=Nannochloropsis gadita... [more]
W7TIV7_9STRA3.220e-1846.94Transposable element n=1 Tax=Nannochloropsis gadit... [more]
W7TII5_9STRA5.450e-1844.90Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
W8BWJ0_CERCA9.510e-1844.90Retrovirus-related Pol polyprotein from transposon... [more]
W7TIM1_9STRA1.280e-1745.92Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
A0A6S7HLY2_PARCT2.320e-1743.30Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2Z7AL20_9LAMI2.480e-1738.78Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9HG25_PARCT2.850e-1743.30Reverse transcriptase Ty1/copia-type domain-contai... [more]
W7TJ26_9STRA3.210e-1745.92Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 1..95
e-value: 4.0E-20
score: 72.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig81401contigH-paniculata_contig81401:6..296 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig81401.16162.1mRNA_H-paniculata_contig81401.16162.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig81401 6..296 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig81401.16162.1 ID=prot_H-paniculata_contig81401.16162.1|Name=mRNA_H-paniculata_contig81401.16162.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=97bp
LRKSLYDLKQSGRNWNNTLDDFLVGIGLQRLTTNPCLYFSRTDGGETNNV
VAVYVDNLVIVGRREKVDEFKHDISQCFRIKDLGSLSRVLGIEVRRD
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2