prot_H-paniculata_contig794.15967.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig794.15967.1
Unique Nameprot_H-paniculata_contig794.15967.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length517
Homology
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BLAST of mRNA_H-paniculata_contig794.15967.1 vs. uniprot
Match: D7G3L4_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3L4_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 2.510e-38
Identity = 99/148 (66.89%), Postives = 111/148 (75.00%), Query Frame = 0 
Query:  160 PPRDQQAVTAHKGARQPALPPPVACTLVAFEPGSLGLELEAVAVESTGGGRGXXXXXXXXXXXRRLGCRVFRVTPDGQAARHGSVHPGDALVVLDGVDVLSEPFDAITQALLERQGRRRLVGFMGAAAVASAS----RAPIVSGLSAL 303
            PP DQ   T H+       PPPVACTLVAFEPGSLGLELEA+ V+     R      XXX   RRLGCRVFRVTPDGQAARHGSVHPGDALVVLDGVDVLS+PF+ IT+ALL+RQGRRRL+GFMG AAVA+++    RAP  S  S+L
Sbjct:  139 PPLDQ---TRHR-------PPPVACTLVAFEPGSLGLELEAI-VDDDKARRHGEEYRXXXRPRRRLGCRVFRVTPDGQAARHGSVHPGDALVVLDGVDVLSDPFEDITRALLQRQGRRRLIGFMGVAAVAASAPQKRRAPSPSSFSSL 275
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BLAST of mRNA_H-paniculata_contig794.15967.1 vs. uniprot
Match: A0A6H5L7S3_9PHAE (PDZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7S3_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 2.040e-37
Identity = 90/108 (83.33%), Postives = 96/108 (88.89%), Query Frame = 0 
Query:  179 PPPVACTLVAFEPGSLGLELEAVAVESTGGGRGXXXXXXXXXXXRRLGCRVFRVTPDGQAARHGSVHPGDALVVLDGVDVLSEPFDAITQALLERQGRRRLVGFMGAA 286
            PPPVACTLVAFEPGSLGLELEA+ V+   G R   XXXXXXX  RRLGCRVFRVTPDGQAARHGSVHPGDALVVLDGVDVLS+PF+ IT ALL+RQGRRRL+GFMGAA
Sbjct:  148 PPPVACTLVAFEPGSLGLELEAI-VDDDKGRRHGEXXXXXXXPRRRLGCRVFRVTPDGQAARHGSVHPGDALVVLDGVDVLSDPFEDITHALLQRQGRRRLIGFMGAA 254
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig794.15967.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G3L4_ECTSI2.510e-3866.89PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L7S3_9PHAE2.040e-3783.33PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.30.42.10coord: 181..282
e-value: 6.4E-6
score: 27.9
IPR001478PDZ domainPROSITEPS50106PDZcoord: 200..258
score: 9.35
IPR036034PDZ superfamilySUPERFAMILY50156PDZ domain-likecoord: 182..272

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig794contigH-paniculata_contig794:8733..11032 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig794.15967.1mRNA_H-paniculata_contig794.15967.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig794 8269..11032 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig794.15967.1 ID=prot_H-paniculata_contig794.15967.1|Name=mRNA_H-paniculata_contig794.15967.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=517bp
MVATATSSSTTATTARVSDTITRPGSEELATNTTKVSSSDDGETRYCRSS
FPLHTSLTHDITEASPTHFFDTTRDSRSGEGSLVTAAATATATEEVPASP
RRHHEEPVSCNLLQASPVVSSALASASARYERRYSYRHRRDAGHGTDSRQ
RDNSDSGYDPPRDQQAVTAHKGARQPALPPPVACTLVAFEPGSLGLELEA
VAVESTGGGRGGQRRGEGQAEGRRLGCRVFRVTPDGQAARHGSVHPGDAL
VVLDGVDVLSEPFDAITQALLERQGRRRLVGFMGAAAVASASRAPIVSGL
SALSDRRSSSRRPTATDEATGRALRQLESPREHNRDREPQQREGGDQRSE
VGGEKGLDFETGGGGGADGGDGGCSAVVSGSTGESKRRSSSTNRATDERE
GHRRQDERFPQSPSAAGSLTGSVKESSHHDHAYRSASIRRQSESSMPALL
DDARRHPYTTKGEDSRGGGGRWASPTNIAGDSARTRIRQAGEHVRSSVVN
SDKYSRYSSTGRGIGVG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001478PDZ
IPR036034PDZ_sf