prot_H-paniculata_contig7916.15943.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig7916.15943.1
Unique Nameprot_H-paniculata_contig7916.15943.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length168
Homology
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BLAST of mRNA_H-paniculata_contig7916.15943.1 vs. uniprot
Match: L8HCZ5_ACACA (Reverse transcriptase n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HCZ5_ACACA)

HSP 1 Score: 53.1 bits (126), Expect = 4.580e-5
Identity = 47/151 (31.13%), Postives = 75/151 (49.67%), Query Frame = 0 
Query:   23 KKKDRGLCWVCGSSEHIARRCPKRHHDTDEGAVALM------ATMRGTKAMM-AVTDDRKTTDNPAVTGEKEHWNSDTDATDHIASDETAFEDYTPALPGTMCEIANGIFVPVAGWGHLVLLVGQPGGKSRVAKLNRVVHVPKIARHLIST 166
            +K+DR LC  C    H+   C +R  DT++  VA        A +  T A++ A T+    + +P VT     W  D+ AT H+A++   F DY   L      + +   +  AG G +   V   G + R+ +L+ V+HVP +AR+L+ST
Sbjct:  296 QKRDRPLCDYCRRPGHLRAVCRRRLADTEQANVAHEVEAVEPADLADTVALVVAETELALVSADPHVT----LWYLDSGATSHMAANRDWFRDYEQ-LSSHPVALGDDRTIHAAGRGIIEASVDVAGRRQRI-QLHDVLHVPNLARNLLST 440
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7916.15943.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
L8HCZ5_ACACA4.580e-531.13Reverse transcriptase n=1 Tax=Acanthamoeba castell... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 1..16
e-value: 59.0
score: 0.3
coord: 29..45
e-value: 0.0049
score: 25.5
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 30..45
score: 8.944
NoneNo IPR availableGENE3D4.10.60.10coord: 1..53
e-value: 2.0E-6
score: 29.4
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 18..51

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7916contigH-paniculata_contig7916:386..889 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7916.15943.1mRNA_H-paniculata_contig7916.15943.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig7916 386..889 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig7916.15943.1 ID=prot_H-paniculata_contig7916.15943.1|Name=mRNA_H-paniculata_contig7916.15943.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=168bp
CSHCEKHGHRGEDCWGAKGDDQKKKDRGLCWVCGSSEHIARRCPKRHHDT
DEGAVALMATMRGTKAMMAVTDDRKTTDNPAVTGEKEHWNSDTDATDHIA
SDETAFEDYTPALPGTMCEIANGIFVPVAGWGHLVLLVGQPGGKSRVAKL
NRVVHVPKIARHLISTR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR036875Znf_CCHC_sf