prot_H-paniculata_contig790.15926.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig790.15926.1
Unique Nameprot_H-paniculata_contig790.15926.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length112
Homology
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BLAST of mRNA_H-paniculata_contig790.15926.1 vs. uniprot
Match: A0A6H5JU63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU63_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 3.820e-17
Identity = 41/59 (69.49%), Postives = 51/59 (86.44%), Query Frame = 0 
Query:   51 KTVSAVKKRFRLTSSGNIKRGQAGMRHNTGPKAKSRKQSLGQTRLVNGPQKKKLLAMLG 109
            KTVS+VKKR R+T SGN+KRGQ+GMRH TGPK +SR ++LGQT+L+ G QKKK+L MLG
Sbjct:   32 KTVSSVKKRVRITGSGNLKRGQSGMRHITGPKPRSRLRNLGQTKLILGKQKKKVLWMLG 90
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BLAST of mRNA_H-paniculata_contig790.15926.1 vs. uniprot
Match: D7FQT0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQT0_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 2.800e-16
Identity = 40/57 (70.18%), Postives = 49/57 (85.96%), Query Frame = 0 
Query:   53 VSAVKKRFRLTSSGNIKRGQAGMRHNTGPKAKSRKQSLGQTRLVNGPQKKKLLAMLG 109
            VS+VKKR R+T SGN+KRGQ+GMRH TGPK +SR +SLGQT+L+ G QKKK+L MLG
Sbjct:   17 VSSVKKRVRITGSGNLKRGQSGMRHITGPKPRSRLRSLGQTKLILGKQKKKVLWMLG 73
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BLAST of mRNA_H-paniculata_contig790.15926.1 vs. uniprot
Match: UPI001C628249 (50S ribosomal protein L35 n=1 Tax=Nocardioides panacisoli TaxID=627624 RepID=UPI001C628249)

HSP 1 Score: 47.4 bits (111), Expect = 6.430e-5
Identity = 30/60 (50.00%), Postives = 38/60 (63.33%), Query Frame = 0 
Query:   49 KTKTVSAVKKRFRLTSSGNIKRGQAGMRHNTGPKAKSRKQSLGQTRLV---NGPQKKKLL 105
            K KT S  KKRF++T SG I+RG+AGMRHN G K+   K+ +  T  V   +  Q KKLL
Sbjct:    3 KNKTHSGAKKRFKVTGSGKIRRGKAGMRHNLGHKSSRVKRRMSGTTEVAANDTAQAKKLL 62
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig790.15926.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JU63_9PHAE3.820e-1769.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQT0_ECTSI2.800e-1670.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI001C6282496.430e-550.0050S ribosomal protein L35 n=1 Tax=Nocardioides pan... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001706Ribosomal protein L35, non-mitochondrialPRINTSPR00064RIBOSOMALL35coord: 49..66
score: 49.74
coord: 82..100
score: 23.06
coord: 67..81
score: 28.89
IPR001706Ribosomal protein L35, non-mitochondrialHAMAPMF_00514Ribosomal_L35coord: 47..110
score: 11.787
NoneNo IPR availableGENE3D2.40.50.530coord: 50..109
e-value: 6.4E-14
score: 54.3
NoneNo IPR availablePANTHERPTHR33343:SF150S RIBOSOMAL PROTEIN L35coord: 46..109
IPR021137Ribosomal protein L35PFAMPF01632Ribosomal_L35pcoord: 49..108
e-value: 5.8E-16
score: 58.7
IPR021137Ribosomal protein L35PANTHERPTHR33343FAMILY NOT NAMEDcoord: 46..109
IPR018265Ribosomal protein L35, conserved sitePROSITEPS00936RIBOSOMAL_L35coord: 51..77
IPR037229Ribosomal protein L35 superfamilySUPERFAMILY143034L35p-likecoord: 49..108

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig790contigH-paniculata_contig790:22024..30675 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig790.15926.1mRNA_H-paniculata_contig790.15926.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig790 21933..31358 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig790.15926.1 ID=prot_H-paniculata_contig790.15926.1|Name=mRNA_H-paniculata_contig790.15926.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=112bp
MFNISFARALTYQLHGGAAAGRSPMTGLVHSIVGGGAQLYSGMQWRGNKT
KTVSAVKKRFRLTSSGNIKRGQAGMRHNTGPKAKSRKQSLGQTRLVNGPQ
KKKLLAMLGSG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001706Ribosomal_L35_non-mt
IPR021137Ribosomal_L35
IPR018265Ribosomal_L35_CS
IPR037229Ribosomal_L35_sf