prot_H-paniculata_contig7893.15915.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig7893.15915.1
Unique Name	prot_H-paniculata_contig7893.15915.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	299

Homology

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BLAST of mRNA_H-paniculata_contig7893.15915.1 vs. uniprot
Match: D7FKE7_ECTSI (RRM Nup35-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKE7_ECTSI)

HSP 1 Score: 184 bits (467), Expect = 1.060e-52
Identity = 145/318 (45.60%), Postives = 166/318 (52.20%), Query Frame = 0

Query:    1 GGDAGY-PPQPGYQTRSRARGRHEAQAERYVEGDLFNSNKRGSARSSEPPPGQPSHNPYYDGGVSGLGT---------SSGVGGYNQQ-SAVRPSPFARGPFVDQNNGFAGAAPSLVVPPGGGGYGAAGGPGHGNSTYAPSGAWSGEAASSEVALVPIDAAG-SRGGDAMEEDDD--LPTRSLVDTDTNDVAGPG--------------GSHLRQRRGADSRVAGVDEGRYGSRADPDASRDTWVMVWGVPEGKSNDVLSCFLQFGQVEEQRGVQGSNWMYLKYATRLQAEKALAAGHGSRLSDTVMLGVQRVAEDEV 290
            GGD GY   Q GYQTRSR RGR      + VEGDLF + KR S RS++PP G P    ++D    G                GG  Q  +A +PSPFARGP  D  +  AG             Y   G            GA  G   SSEVALVP++A+G SRG + M+      +PTRSL D D +DV   G                        D        G +   A PD  R TWV+VWGVP GKSN VL  FLQFG V EQRG  GSNW+Y KYATRLQAEKALAAGHGSRL+DTVMLGVQRV +DEV
Sbjct:    6 GGDVGYGTQQQGYQTRSRERGRDGPPEGQVVEGDLFGNPKRQSFRSTDPPTGAPPRGAFHDATAGGXXXXXXNAFRNGGXXXGGCGQTPAAAQPSPFARGPMNDSFSA-AGGGXXXXXXXXXXXYSNPGQTAQQQQQQHGFGARVGF--SSEVALVPVEASGNSRGRNVMDXXXXXXIPTRSLAD-DPDDVRDGGVLFGXXXXXXXXXXXXXXXXXXXVDRMXXXXGIGSF--NAAPDTQRATWVVVWGVPPGKSNQVLIRFLQFGDVVEQRGQPGSNWLYFKYATRLQAEKALAAGHGSRLTDTVMLGVQRVPDDEV 317

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BLAST of mRNA_H-paniculata_contig7893.15915.1 vs. uniprot
Match: A0A6H5KSX2_9PHAE (RRM Nup35-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSX2_9PHAE)

HSP 1 Score: 168 bits (426), Expect = 1.440e-46
Identity = 130/310 (41.94%), Postives = 154/310 (49.68%), Query Frame = 0

Query:    1 GGDAGY-PPQPGYQTRSRARGRHEAQAERYVEGDLFNSNKRGSARSSEPPPGQPSHNPYYDGGVSGLGTSSGVGGYNQQ-----------SAVRPSPFARGPFVDQNNGFAGAAPSLVVPPGGGGYGAAGGPGHGNSTYAPSGAWSGEAASSEVALVPIDAAG-SRGGDAMEEDDDLP---TRSLVDTDTNDVAGPGGSHLRQRRGADSRVAGVDEGRY-----GSRADPDASRDTWVMVWGVPEGKSNDVLSCFLQFGQVEEQRGVQGSNWMYLKYATRLQAEKALAAGHGSRLSDTVMLGVQRVAEDE 289
            GGD GY   Q GYQTRSR RGR      + VEGDLF + KR + RS++PP G P    Y D    G         +              ++ +PSPFARGP ++ ++  A             GY     PG         G  +    SS+VA VP++A+G SRG + M+         TRSL                                       G  A PD  R TWV+VWGVP GKSN VL  FLQFG V EQRG  GSNW+YLKYATRLQAEKALAAGHGSRL+DTVMLGVQRV +DE
Sbjct:    6 GGDVGYGTQQQGYQTRSRGRGRDGPPEGQVVEGDLFGNPKRQNFRSTDPPTGVPPRGAYIDATAGGXXXXXXXNAFRSXXXXXXXXXQTPASAQPSPFARGP-MNASSSVAXXXXXXXXXXXXXGYSD---PGQTAQQQQQHGFGARVGFSSDVAFVPVEASGNSRGQNVMDXXXXXXXXXTRSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGGFNAAPDTQRATWVVVWGVPPGKSNQVLIRFLQFGDVVEQRGQPGSNWLYLKYATRLQAEKALAAGHGSRLTDTVMLGVQRVLDDE 311

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BLAST of mRNA_H-paniculata_contig7893.15915.1 vs. uniprot
Match: A0A836CNV8_9STRA (RRM Nup35-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNV8_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 1.220e-9
Identity = 50/130 (38.46%), Postives = 71/130 (54.62%), Query Frame = 0

Query:  161 DDDLPTRSLVDTDTN----DVAGPGGSHLRQRRGADSRVAGVDEGRYGSRADPDASRDTWVMVWGVPEGKSNDVLSCFLQFGQVEEQRGVQGSNWMYLKYATRLQAEKALAAGHGSRLSD-TVMLGVQRV 285
            D+  PT SL+D+         A      LR+RR  D  +A         R+  D +R  WVMV+G+P G   +V+  F  +GQV E R  QG NW+ L+YAT LQA KALA+G+ +R+S   +M+G   +
Sbjct:   40 DEAPPTMSLLDSGARAEPWSAAQEASFGLRRRRAGDDLLA---------RSAEDWAR--WVMVYGMPAGCVAEVVDHFRVYGQVVENRVGQG-NWVLLRYATVLQARKALASGNHARISGGRIMVGTSAI 157

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BLAST of mRNA_H-paniculata_contig7893.15915.1 vs. uniprot
Match: E9HKL2_DAPPU (Nucleoporin NUP35 (Fragment) n=3 Tax=Daphnia TaxID=6668 RepID=E9HKL2_DAPPU)

HSP 1 Score: 61.6 bits (148), Expect = 6.850e-8
Identity = 32/73 (43.84%), Postives = 47/73 (64.38%), Query Frame = 0

Query:  210 DASRDTWVMVWGVPEGKSNDVLSCFLQFGQVEEQRGVQGSNWMYLKYATRLQAEKALAAGHGSRLSDTVMLGV 282
            D+   TWV V+G P   ++ VL+    +G + E R     NWM+LK+A+RLQA KALA  +G  L+DT+++GV
Sbjct:    4 DSDAGTWVTVFGFPPTAASYVLTQTAMWGHILEHRIPSQGNWMHLKFASRLQARKALAR-NGRLLTDTLIIGV 75

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BLAST of mRNA_H-paniculata_contig7893.15915.1 vs. uniprot
Match: A0A0P5DW53_9CRUS (Nucleoporin NUP53 n=2 Tax=Daphnia magna TaxID=35525 RepID=A0A0P5DW53_9CRUS)

HSP 1 Score: 63.2 bits (152), Expect = 9.330e-8
Identity = 33/73 (45.21%), Postives = 47/73 (64.38%), Query Frame = 0

Query:  210 DASRDTWVMVWGVPEGKSNDVLSCFLQFGQVEEQRGVQGSNWMYLKYATRLQAEKALAAGHGSRLSDTVMLGV 282
            D+   TWV V+G P   ++ VL+    +G + E R     NWM+LK+A+RLQA KALA  +G  L+DT+M+GV
Sbjct:  136 DSDAGTWVTVFGFPPSAASYVLTQTGMWGHIMEHRIPSQGNWMHLKFASRLQARKALAR-NGRLLTDTLMIGV 207

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BLAST of mRNA_H-paniculata_contig7893.15915.1 vs. uniprot
Match: A0A024U1H3_9STRA (RRM Nup35-type domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U1H3_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 3.010e-7
Identity = 35/69 (50.72%), Postives = 42/69 (60.87%), Query Frame = 0

Query:  216 WVMVWGVPEGKSNDVLSCFLQFGQVEEQRGVQGSNWMYLKYATRLQAEKALAAGHGSRLSDTVMLGVQR 284
            WV V+G P      VLS F   G V + R  +G NW+YL+Y TRLQAEKAL    GS L   VM+GV+R
Sbjct:  135 WVTVFGFPMQDMEVVLSYFQAIGNVAQYRHGRG-NWLYLRYQTRLQAEKALIES-GSTLGGRVMIGVKR 201

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BLAST of mRNA_H-paniculata_contig7893.15915.1 vs. uniprot
Match: A0A3L6VS50_9STRA (RRM Nup35-type domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VS50_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.040e-6
Identity = 33/69 (47.83%), Postives = 43/69 (62.32%), Query Frame = 0

Query:  216 WVMVWGVPEGKSNDVLSCFLQFGQVEEQRGVQGSNWMYLKYATRLQAEKALAAGHGSRLSDTVMLGVQR 284
            W+ V+G P    + VLS F   G V + R  +G NW+YL+Y TRLQAE+AL    GS L   VM+GV+R
Sbjct:  127 WITVFGFPLQDMDVVLSYFQTVGDVAQYRHGRG-NWLYLRYQTRLQAERALFES-GSTLGGRVMIGVKR 193

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BLAST of mRNA_H-paniculata_contig7893.15915.1 vs. uniprot
Match: UPI00074FDF02 (nucleoporin NUP53 isoform X1 n=6 Tax=Gekko japonicus TaxID=146911 RepID=UPI00074FDF02)

HSP 1 Score: 59.7 bits (143), Expect = 1.690e-6
Identity = 28/85 (32.94%), Postives = 47/85 (55.29%), Query Frame = 0

Query:  214 DTWVMVWGVPEGKSNDVLSCFLQFGQVEEQRGVQGSNWMYLKYATRLQAEKALAAGHGSRLSDTVMLGVQRVAEDEVRNRCVEQY 298
            DTWV V+G P+G ++ +L  F Q+G + +       NWM++ Y ++LQA KAL+   G    +++M+GV+   +  V       Y
Sbjct:  180 DTWVTVFGFPQGSASYILLQFAQYGNILKHVMSNTGNWMHIHYQSKLQARKALSKD-GRIFGESIMIGVKPCIDKSVMENIDRSY 263

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BLAST of mRNA_H-paniculata_contig7893.15915.1 vs. uniprot
Match: W4GBV0_9STRA (RRM Nup35-type domain-containing protein n=8 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GBV0_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.920e-6
Identity = 33/69 (47.83%), Postives = 43/69 (62.32%), Query Frame = 0

Query:  216 WVMVWGVPEGKSNDVLSCFLQFGQVEEQRGVQGSNWMYLKYATRLQAEKALAAGHGSRLSDTVMLGVQR 284
            W+ V+G P    + VLS F   G V + R  +G NW+YL+Y TRLQAE+AL    GS L   VM+GV+R
Sbjct:  139 WITVFGFPLQDMDVVLSYFQTVGDVAQYRHGRG-NWLYLRYQTRLQAERALFES-GSTLGGRVMIGVKR 205

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BLAST of mRNA_H-paniculata_contig7893.15915.1 vs. uniprot
Match: A0A1V9Z8L5_9STRA (RRM Nup35-type domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z8L5_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 2.350e-6
Identity = 33/80 (41.25%), Postives = 45/80 (56.25%), Query Frame = 0

Query:  211 ASRDTWVMVWGVPEGKSNDVLSCFLQFGQVEEQRGVQGSNWMYLKYATRLQAEKALAAGHGSRLSDTVMLGVQRVAEDEV 290
            A    W+ V+G        +L  F   G   + R  +G NW+Y++Y TRLQAEKALA   GS LS +VM+GV+R    E+
Sbjct:  123 ADEQYWITVFGFSAVDMETILRHFQSMGDAVQYRYGRG-NWLYVRYRTRLQAEKALAES-GSTLSGSVMIGVKRCLVSEM 200

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig7893.15915.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig7893.15915.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 17


Match Name	E-value	Identity	Description
D7FKE7_ECTSI	1.060e-52	45.60	RRM Nup35-type domain-containing protein n=1 Tax=E...	[more]
A0A6H5KSX2_9PHAE	1.440e-46	41.94	RRM Nup35-type domain-containing protein n=1 Tax=E...	[more]
A0A836CNV8_9STRA	1.220e-9	38.46	RRM Nup35-type domain-containing protein n=1 Tax=T...	[more]
E9HKL2_DAPPU	6.850e-8	43.84	Nucleoporin NUP35 (Fragment) n=3 Tax=Daphnia TaxID...	[more]
A0A0P5DW53_9CRUS	9.330e-8	45.21	Nucleoporin NUP53 n=2 Tax=Daphnia magna TaxID=3552...	[more]
A0A024U1H3_9STRA	3.010e-7	50.72	RRM Nup35-type domain-containing protein n=1 Tax=A...	[more]
A0A3L6VS50_9STRA	1.040e-6	47.83	RRM Nup35-type domain-containing protein (Fragment...	[more]
UPI00074FDF02	1.690e-6	32.94	nucleoporin NUP53 isoform X1 n=6 Tax=Gekko japonic...	[more]
W4GBV0_9STRA	1.920e-6	47.83	RRM Nup35-type domain-containing protein n=8 Tax=A...	[more]
A0A1V9Z8L5_9STRA	2.350e-6	41.25	RRM Nup35-type domain-containing protein n=1 Tax=A...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007846	RNA-recognition motif (RRM) Nup35-type domain	PFAM	PF05172	Nup35_RRM	coord: 212..286 e-value: 4.2E-12 score: 45.9
IPR007846	RNA-recognition motif (RRM) Nup35-type domain	PROSITE	PS51472	RRM_NUP35	coord: 211..292 score: 18.596
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 210..284 e-value: 1.3E-16 score: 62.3
None	No IPR available	PANTHER	PTHR21527:SF6	NUCLEOPORIN NUP35	coord: 40..291
None	No IPR available	PANTHER	PTHR21527	FAMILY NOT NAMED	coord: 40..291
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 213..288

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig7893	contig	H-paniculata_contig7893:5955..9813 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig7893.15915.1	mRNA_H-paniculata_contig7893.15915.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig7893 5955..9813 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig7893.15915.1 ID=prot_H-paniculata_contig7893.15915.1|Name=mRNA_H-paniculata_contig7893.15915.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=299bp
GGDAGYPPQPGYQTRSRARGRHEAQAERYVEGDLFNSNKRGSARSSEPPP
GQPSHNPYYDGGVSGLGTSSGVGGYNQQSAVRPSPFARGPFVDQNNGFAG
AAPSLVVPPGGGGYGAAGGPGHGNSTYAPSGAWSGEAASSEVALVPIDAA
GSRGGDAMEEDDDLPTRSLVDTDTNDVAGPGGSHLRQRRGADSRVAGVDE
GRYGSRADPDASRDTWVMVWGVPEGKSNDVLSCFLQFGQVEEQRGVQGSN
WMYLKYATRLQAEKALAAGHGSRLSDTVMLGVQRVAEDEVRNRCVEQY*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR007846	RRM_NUP35_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf