prot_H-paniculata_contig7835.15860.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig7835.15860.1
Unique Nameprot_H-paniculata_contig7835.15860.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length271
Homology
BLAST of mRNA_H-paniculata_contig7835.15860.1 vs. uniprot
Match: D7G4T8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4T8_ECTSI)

HSP 1 Score: 303 bits (775), Expect = 1.070e-91
Identity = 172/264 (65.15%), Postives = 194/264 (73.48%), Query Frame = 0
Query:    1 QDSTGKSKGTAVFEYSDTECSQLALSGLSGLPVGKGKLMVQRVPAVMAATLLKPVKPKPSDDGLDTAEPSPVIRLSNMVSLEELEDDTEYADIKTDVAEECGQYGKVKSVELPRPEEGKAEVLGAGEIFVEFEDIAGASKGRQALAGRSFNGKAVKATFFPHDLFQMGIFGKPPTQEASQAGETMSAASTAAAAAPKEVKPGAEQTGIGGFVIVGEADDLPPAEAILSGGGGAG---MPPDFDDSDMXXXXDAEPVENFEPKIP 261
            +DS+GKSKGTAVFEY+D E  QLALSGLSGLPVGKGKLMVQRVPA+MAATLLKPVK K  +D  D  EP+ V+RLSNMV +EEL DDTEYA+IK DV EEC QYGKVKS E+PRPE+GK EVLG GEIFVEFED+AGA+KGR ALAGR F GKAVKAT++P DLFQMG+FGKP  +EA    +            P EV+PGAEQ G  GFVIVGEADD P    + +G G  G   +PPDFD         A PVE FE K P
Sbjct:  882 KDSSGKSKGTAVFEYTDMENGQLALSGLSGLPVGKGKLMVQRVPAMMAATLLKPVKVKEVEDEQDNVEPTCVVRLSNMVEVEELADDTEYAEIKGDVVEECEQYGKVKSAEVPRPEDGK-EVLGLGEIFVEFEDVAGATKGRNALAGRKFGGKAVKATYYPLDLFQMGVFGKPSVEEAPAVTKEPEKKHPT----PAEVQPGAEQGGAHGFVIVGEADDGPAPMPVSNGVGSIGDDDLPPDFD---------AMPVEAFETKTP 1131          
BLAST of mRNA_H-paniculata_contig7835.15860.1 vs. uniprot
Match: A0A836CGC8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGC8_9STRA)

HSP 1 Score: 151 bits (382), Expect = 7.140e-38
Identity = 85/169 (50.30%), Postives = 113/169 (66.86%), Query Frame = 0
Query:    2 DSTGKSKGTAVFEYSDTECSQLALSGLSGLPVGKGKLMVQRVPAVMAATLLKPVK---PKPS------DDGLDTAEPSPVIRLSNMVSLEELEDDTEYADIKTDVAEECGQYGKVKSVELPRPEEGKAEVLGAGEIFVEFEDIAGASKGRQALAGRSFNGKAVKATFFP 161
            DS GKSKGTAV EY+++E + +A+ GL  LPV   KLM QRVP  +A TLL+  +   P+P+      DDG      S V+ L NMV + +LEDD EY DI  DV +ECGQ+G+VK+V +PRP++  AEV G G+IFVEF D+ GA+   + LAGR+F G  VKA ++P
Sbjct:  678 DSYGKSKGTAVCEYTESEAADVAMKGLDNLPVADCKLMAQRVPKGVAETLLRKTEIKAPEPTPYPEVPDDGT-----SRVVCLHNMVLISDLEDDVEYGDIVNDVRDECGQFGQVKNVVIPRPDKSGAEVPGLGDIFVEFGDVKGAAAAIKGLAGRTFGGNIVKARYYP 841          
BLAST of mRNA_H-paniculata_contig7835.15860.1 vs. uniprot
Match: A0A812YL79_SYMMI (U2af50 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812YL79_SYMMI)

HSP 1 Score: 134 bits (338), Expect = 8.110e-35
Identity = 80/190 (42.11%), Postives = 107/190 (56.32%), Query Frame = 0
Query:    7 SKGTAVFEYSDTECSQLALSGLSGLPVGKGKLMVQRVPAVMAATLLKPVKPKPSDDG-------------------LDTAEPSPVIRLSNMVSLEELEDDTEYADIKTDVAEECGQYGKVKSVELPRPEEGKA----EVLGAGEIFVEFEDIAGASKGRQALAGRSFNGKAVKATFFPHDLFQMGIFGKP 173
            S G AV EY D   +  A+ GL+GL +G  KL VQRVPA MAA LL P  P  S  G                   L T  P+ V+RLSNM ++E+L+DD  Y +++ DV +EC  YG VK++ +PRP EG      E+ G G IFV F    GA++ + A+ GR+FNG+ V A F+P DLF+   +  P
Sbjct:   38 SGGAAVLEYVDKTLTDEAVKGLNGLQLGGSKLSVQRVPAQMAAMLLVPPTPSSSGAGGTGVGSVVSAGSAASSPDPLLTHPPTCVLRLSNMTTMEDLQDDDAYDELQEDVGDECNNYGTVKAIVIPRPLEGSPAKQNEMRGVGMIFVSFTSPEGATRSKAAVHGRTFNGQKVVAVFYPEDLFEKKEYSLP 227          
BLAST of mRNA_H-paniculata_contig7835.15860.1 vs. uniprot
Match: A0A7R9Y9W2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y9W2_9STRA)

HSP 1 Score: 134 bits (337), Expect = 5.690e-32
Identity = 78/180 (43.33%), Postives = 102/180 (56.67%), Query Frame = 0
Query:    2 DSTGKSKGTAVFEYSDTECSQLALSGLSGLPVGKGKLMVQRVPAVMAATLLKP-VKPKPSDDGLDTAEPSPVIRLSNMVSLEELEDDTEYADIKTDVAEECGQYGKVKSVELPRPEEGKAE---VLGAGEIFVEFEDIAGASKGRQALAGRSFNGKAVKATFFPHDLFQMGIFGKPPTQE 177
            D+ G SKGTA+FEY +      A++GL+GLP+G+ KL+ Q +   MAATLL P ++ KPS         S V+RLSNM + E L D  EY DIK DV EECG YGKV    +P+P     +     G G IFV FE    A +  + L GR F+G+ V AT +P   F+ G F     +E
Sbjct:  460 DAEGNSKGTALFEYREAAVGLAAINGLNGLPLGEVKLVAQELAPTMAATLLAPMIEKKPSSGNYS----SQVVRLSNMATRELLADPQEYQDIKEDVEEECGNYGKVVGFVMPKPNADSTDDEAAAGVGNIFVRFESEESAKRAIRELQGRPFDGRKVVATHYPLRFFKKGFFSNKDAEE 635          
BLAST of mRNA_H-paniculata_contig7835.15860.1 vs. uniprot
Match: A0A1V9YMP3_9STRA (Splicing factor U2af large subunit n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YMP3_9STRA)

HSP 1 Score: 130 bits (326), Expect = 6.360e-31
Identity = 70/170 (41.18%), Postives = 102/170 (60.00%), Query Frame = 0
Query:    1 QDSTGKSKGTAVFEYSDTECSQLALSGLSGLPVGKGKLMVQRVPAVMAATLLKPVKPKPSDDGLDTAEPSPVIRLSNMVSLEELEDDTEYADIKTDVAEECGQYGKVKSVELPRPEEGKAEVLGAGEIFVEFEDIAGASKGRQALAGRSFNGKAVKATFFPHDLFQMGIF 170
            +D+ G S G+A+FEY+D   +Q AL GL+GL +    L+VQR P         P  P         A P+PVI+L NMV   ELEDD+E+AD+K D+ EEC ++GKV+++ +PRP +G   + G G++FV FE++AGA    +AL GR F G  V  ++   + F+   F
Sbjct:  363 KDNAGTSTGSALFEYTDESVTQSALDGLNGLEIAGSALLVQRAPRHGTIPEYNPNAPP-------EATPTPVIQLGNMVQESELEDDSEFADLKLDIDEECNKFGKVEALVIPRPSDG---IPGVGKVFVRFENVAGAVAATKALTGRKFGGNVVAVSYMSVEAFENKAF 522          
BLAST of mRNA_H-paniculata_contig7835.15860.1 vs. uniprot
Match: D0MUA2_PHYIT (Splicing factor U2af large subunit, putative n=12 Tax=Phytophthora TaxID=4783 RepID=D0MUA2_PHYIT)

HSP 1 Score: 130 bits (327), Expect = 8.120e-31
Identity = 74/163 (45.40%), Postives = 101/163 (61.96%), Query Frame = 0
Query:    4 TGKSKGTAVFEYSDTECSQLALSGLSGLPVGKGKLMVQRVPAVMAATLLKPVKPKPSDDGLDTAEPSPVIRLSNMVSLEELEDDTEYADIKTDVAEECGQYGKVKSVELPRPEEGKAEVLGAGEIFVEFEDIAGASKGRQALAGRSFNGKAVKATFFPHDLFQ 166
            TG S G+A+FEY D++ +  A+ GL+GL +G   L VQR PA  AA L       P D      +PS V++++NMVS++EL DD EYAD+  DV EEC ++G V  +E+PRP++G+ EV G G I+V F     A    +AL GR F G  VK T+FP D F+
Sbjct:  437 TGASLGSALFEYEDSDVAAQAVEGLNGLSIGGILLSVQRQPASSAAALPSAAAANPED------QPSAVLKMANMVSIDELRDDEEYADLAEDVEEECKRFGGVTGMEIPRPKDGE-EVPGLGCIYVRFGKEEDAVSALKALNGRKFGGNIVKVTYFPVDKFE 592          
BLAST of mRNA_H-paniculata_contig7835.15860.1 vs. uniprot
Match: A0A1I8IIN5_9PLAT (Splicing factor U2AF subunit n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8IIN5_9PLAT)

HSP 1 Score: 125 bits (313), Expect = 1.690e-30
Identity = 72/172 (41.86%), Postives = 101/172 (58.72%), Query Frame = 0
Query:    4 TGKSKGTAVFEYSDTECSQLALSGLSGLPVGKGKLMVQRVPA-----VMAATLLKPVKPKPSDDGLDTAEPSPVIRLSNMVSLEELEDDTEYADIKTDVAEECGQYGKVKSVELPRPEEGKAEVLGAGEIFVEFEDIAGASKGRQALAGRSFNGKAVKATFFPHDLFQMGIF 170
            +G SKG A  EY D   +  A +GL+G+P+G  KL+VQR         +AA+L+    P     G++   P+ V+ L NMV+ EELED+ EY DI  DV EECG+YG V+S+E+PR  +G  EV G G+IFVEF  +    K  +AL GR FN + V  +++  D +    F
Sbjct:  134 SGLSKGYAFAEYLDPSITDAACAGLNGMPLGDKKLVVQRAAIGSKAQQLAASLIPSNVPGLQTAGMEAGPPTEVLVLMNMVTPEELEDEEEYEDILDDVREECGRYGTVRSLEIPRGVKG-VEVAGVGKIFVEFASVEDCQKALEALTGRKFNNRVVVTSYYDPDKYHRREF 304          
BLAST of mRNA_H-paniculata_contig7835.15860.1 vs. uniprot
Match: A0A329SMH5_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SMH5_9STRA)

HSP 1 Score: 127 bits (320), Expect = 3.810e-30
Identity = 71/163 (43.56%), Postives = 100/163 (61.35%), Query Frame = 0
Query:    4 TGKSKGTAVFEYSDTECSQLALSGLSGLPVGKGKLMVQRVPAVMAATLLKPVKPKPSDDGLDTAEPSPVIRLSNMVSLEELEDDTEYADIKTDVAEECGQYGKVKSVELPRPEEGKAEVLGAGEIFVEFEDIAGASKGRQALAGRSFNGKAVKATFFPHDLFQ 166
            TG S G A+FEY D++ +  A+ GL+GL +G   L VQR P    A +  P      +D     +PSPV++++NMVS++EL DD EYAD+  DV EEC ++G V  +E+PRP++G+ EV G G I++ F     A    +AL GR F G  VK T+FP D F+
Sbjct:  347 TGASLGNALFEYEDSDVAAQAVEGLNGLSIGGILLSVQRQPPSSGAAVALPSAAVNPED-----QPSPVLKMANMVSIDELRDDEEYADLAEDVEEECKRFGSVTGMEIPRPKDGE-EVPGLGCIYIRFGKEEDAVSALKALNGRKFGGNIVKVTYFPLDKFE 503          
BLAST of mRNA_H-paniculata_contig7835.15860.1 vs. uniprot
Match: A0A0W8C5W0_PHYNI (Splicing factor U2AF 50 kDa subunit n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8C5W0_PHYNI)

HSP 1 Score: 125 bits (314), Expect = 5.010e-30
Identity = 73/163 (44.79%), Postives = 99/163 (60.74%), Query Frame = 0
Query:    4 TGKSKGTAVFEYSDTECSQLALSGLSGLPVGKGKLMVQRVPAVMAATLLKPVKPKPSDDGLDTAEPSPVIRLSNMVSLEELEDDTEYADIKTDVAEECGQYGKVKSVELPRPEEGKAEVLGAGEIFVEFEDIAGASKGRQALAGRSFNGKAVKATFFPHDLFQ 166
            TG S G+A+FEY D + +  A+ GL+GL +G   L VQR P   AA     V P+         EPS V++++NMVS++EL DD EYAD+  DV EEC ++G V  +E+PRP++G+ EV G G I+V F     A    +AL GR F G  VK T+FP D F+
Sbjct:  221 TGASLGSALFEYEDKDVADQAVEGLNGLSIGGILLSVQRQPPNAAALPSAAVTPED--------EPSAVLKMANMVSIDELRDDEEYADLAEDVEEECKRFGSVTGMEIPRPKDGE-EVPGLGCIYVRFGKEEDAVSALKALNGRKFGGNIVKVTYFPLDKFE 374          
BLAST of mRNA_H-paniculata_contig7835.15860.1 vs. uniprot
Match: A0A1I8HH88_9PLAT (Splicing factor U2AF subunit n=5 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8HH88_9PLAT)

HSP 1 Score: 125 bits (313), Expect = 4.090e-29
Identity = 72/172 (41.86%), Postives = 101/172 (58.72%), Query Frame = 0
Query:    4 TGKSKGTAVFEYSDTECSQLALSGLSGLPVGKGKLMVQRVPA-----VMAATLLKPVKPKPSDDGLDTAEPSPVIRLSNMVSLEELEDDTEYADIKTDVAEECGQYGKVKSVELPRPEEGKAEVLGAGEIFVEFEDIAGASKGRQALAGRSFNGKAVKATFFPHDLFQMGIF 170
            +G SKG A  EY D   +  A +GL+G+P+G  KL+VQR         +AA+L+    P     G++   P+ V+ L NMV+ EELED+ EY DI  DV EECG+YG V+S+E+PR  +G  EV G G+IFVEF  +    K  +AL GR FN + V  +++  D +    F
Sbjct:  352 SGLSKGYAFAEYLDPSITDAACAGLNGMPLGDKKLVVQRAAIGSKAQQLAASLIPSNVPGLQTAGMEAGPPTEVLVLMNMVTPEELEDEEEYEDILDDVREECGRYGTVRSLEIPRGVKG-VEVAGVGKIFVEFASVEDCQKALEALTGRKFNNRVVVTSYYDPDKYHRREF 522          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7835.15860.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4T8_ECTSI1.070e-9165.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CGC8_9STRA7.140e-3850.30Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A812YL79_SYMMI8.110e-3542.11U2af50 protein n=1 Tax=Symbiodinium microadriaticu... [more]
A0A7R9Y9W2_9STRA5.690e-3243.33Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A1V9YMP3_9STRA6.360e-3141.18Splicing factor U2af large subunit n=1 Tax=Achlya ... [more]
D0MUA2_PHYIT8.120e-3145.40Splicing factor U2af large subunit, putative n=12 ... [more]
A0A1I8IIN5_9PLAT1.690e-3041.86Splicing factor U2AF subunit n=1 Tax=Macrostomum l... [more]
A0A329SMH5_9STRA3.810e-3043.56Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A0W8C5W0_PHYNI5.010e-3044.79Splicing factor U2AF 50 kDa subunit n=1 Tax=Phytop... [more]
A0A1I8HH88_9PLAT4.090e-2941.86Splicing factor U2AF subunit n=5 Tax=Macrostomum l... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 96..156
e-value: 1.9E-4
score: 21.2
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 77..162
score: 9.32
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 66..170
e-value: 6.9E-29
score: 101.9
NoneNo IPR availablePANTHERPTHR23139:SF9SPLICING FACTOR U2AF 65 KDA SUBUNITcoord: 2..168
NoneNo IPR availablePANTHERPTHR23139RNA-BINDING PROTEINcoord: 2..168
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 68..161

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7835contigH-paniculata_contig7835:818..5163 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7835.15860.1mRNA_H-paniculata_contig7835.15860.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig7835 818..5163 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig7835.15860.1 ID=prot_H-paniculata_contig7835.15860.1|Name=mRNA_H-paniculata_contig7835.15860.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=271bp
QDSTGKSKGTAVFEYSDTECSQLALSGLSGLPVGKGKLMVQRVPAVMAAT
LLKPVKPKPSDDGLDTAEPSPVIRLSNMVSLEELEDDTEYADIKTDVAEE
CGQYGKVKSVELPRPEEGKAEVLGAGEIFVEFEDIAGASKGRQALAGRSF
NGKAVKATFFPHDLFQMGIFGKPPTQEASQAGETMSAASTAAAAAPKEVK
PGAEQTGIGGFVIVGEADDLPPAEAILSGGGGAGMPPDFDDSDMPPDFDA
EPVENFEPKIPPAAAAATAGD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf