prot_H-paniculata_contig771.15728.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig771.15728.1
Unique Nameprot_H-paniculata_contig771.15728.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length553
Homology
BLAST of mRNA_H-paniculata_contig771.15728.1 vs. uniprot
Match: D8LM48_ECTSI (TRAF-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM48_ECTSI)

HSP 1 Score: 473 bits (1217), Expect = 7.080e-158
Identity = 305/604 (50.50%), Postives = 355/604 (58.77%), Query Frame = 0
Query:    1 DWIFSLDQDWLLNVILPWLGAEELLLRSCDVCPIWRQWCNESLKVLDIGNDYQRVRSNSTEGTSTTRALRPLFLPLVPSNLLELNLSGTWTTLQARELGTIRKGCRLRKLGLASVRFASTLKRLTAVKCRLWTKWDLSRFEPLRALEVSFANRTTLEQLARKAEAGLGLTELSVCDLALRNLVRATELQELQQAVAAAEIFRLRRVDVVKEVPHFAYLRAVLVRLNSLQVLELTDVALDDAMLQTLGECLSLVR---TTAEGPATXXXXXXXXXXXGNYNGEGGSSNDGSGCGGEVISLRTLVLESCERVSASAFEAFLSIVGGXXXXXXXXXX-RVAGTERR-----EXXXXXXXXXXXXXXXDGGALGNGMALSTVRLIGCKALDDRGLKLLAAGVRDRLKDLQGRMLRSVKAWGIRAAGRMATAS----------------LRAAYEARGVDLAWARPLPSQSSAIIAGVGEALLPSSSQLPFQKPGETG------GEGGEEPCVGRG--------------------SRKGCSFGCGAVPTALDAVDHVEVCPLSPVACLLRADGCSWRGPRPSRRRHLKECSFWQVKCPVCCHSVHHSG 553
            DW+    Q+WL   I PWLGAEE L R+C VC  WR WCN  L VL IGND+QR+  +S    +   ++ PLFLPLVP  L EL++SG WT+L   ELGTIR+GCRL+KL +  +RFA+TLKRL AVK RLW +WDLS F  L +LEVSFA R  L+QL RKAE G  L EL VCDLALRNLVR TEL EL +AV  A  FRLRRVDVVKEVP+FAYLRA+  RL +LQVLELTDVALDD+ML  LGE  S  R      +G A             + N    S  DG      V SLRTLVL  C  VS  AFEAFL +V G           R +G+E R      XXXXXXXXXXXXXXX       G+ALS+VRL GC+AL +RGL LL  G R+RL D+Q   LR VKAWGIR AG +  ++                LR ++EARGV+LAWA PLP  S  +       L P     P ++    G      G  GE P  G                       R+ C   CGA P   DA DH+EVCPL+PV CLLRADGC W+G R  RRRHL  C  WQV CP CC +VH SG
Sbjct:    7 DWV---GQEWLHGEIAPWLGAEETLRRTCSVCRAWRHWCNNYLTVLHIGNDHQRLHGSSCSARTAGLSI-PLFLPLVPFALRELSMSGGWTSLGGVELGTIRRGCRLKKLVVTGMRFAATLKRLVAVKTRLWNRWDLSTFAALTSLEVSFAGRAMLKQLPRKAEMGSRLAELCVCDLALRNLVRPTELTELAEAVGGASTFRLRRVDVVKEVPNFAYLRAIFGRLQNLQVLELTDVALDDSMLAVLGEAFSSARLPPAAVKGAAAAARAEPYNTFFPSANAVAASQQDGGEGDVAVASLRTLVLGRCGGVSEPAFEAFLDLVAGCGVIRAGLVGKRGSGSEERGXXXXXXXXXXXXXXXXXXXXXXXXXXXGLALSSVRLEGCRALGNRGLALLCGGARERLSDIQCPTLRMVKAWGIRLAGSLGGSAVSSXXXXXXPSAEALALRQSFEARGVELAWAGPLPPPSGRV-----RELQPPRENKPGREQRRRGHGCGVNGGSGERPEPGXXXXWRXXXXXXXXXXXXXSGQGRRPCRLQCGAAPKIEDAEDHLEVCPLAPVDCLLRADGCDWKGTRRQRRRHLAACPMWQVMCPGCCRAVHVSG 601          
BLAST of mRNA_H-paniculata_contig771.15728.1 vs. uniprot
Match: A0A6H5KF56_9PHAE (TRAF-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF56_9PHAE)

HSP 1 Score: 404 bits (1039), Expect = 1.040e-126
Identity = 290/752 (38.56%), Postives = 341/752 (45.35%), Query Frame = 0
Query:    8 QDWLLNVILPWLGAEELLLRSCDVCPIWRQWCNESLKVLDIGNDYQRVRSNSTEGTSTTRALRPLFLPLVPSNLLELNLSGTWTTLQARELGTIRKGCRLRKL------------------------------------------------------------------------------------GLA--------------------------------SVRFASTLKRLTAVKCRLWTKWDLSRFEPLRALEVSFANRTTLEQLARKAEAGLGLTELSVCDLALRNLVRATELQELQQAVAAAEIFRLRRVDVVKEVPHFAYLRAVLVRLNSLQVLELTDVALDDAMLQTLGECLSLVR---TTAEGPATXXXXXXXXXXXGNYNGEGGSSNDGSGCGGEVISLRTLVLESCERVSASAFEAFLSIV-GGXXXXXXXXXXRVAGTERREXXXXXXXXXXXXXXXDGGALG-----NGMALSTVRLIGCKALDDRGLKLLAAGVRDRLKDLQ--GRML------------------------------------------RSVKAWGIRAAGRMAT--------------ASLRAAYEARGVDLAWARPLPSQSSAIIAGVGEALLPSSSQLPFQKPGETG------GEGGEEPCVGRG--------------------SRKGCSFGCGAVPTALDAVDHVEVCPLSPVACLLRADGCSWRGPRPSRRRHLKECSFWQVKCPVCCHSVH 550
            Q+WL   I PWLGAEE L R+C VC  WR WCN  L VL IGND+Q +  +S    +   ++ PLFLPLVP  L EL++SG WT+L   ELGTIR+GCRL+KL                                                                                    G++                                S RFA+TLKRL AVK RLW +WDLS F  L +LE SFA R  L+QL RKAE G  L EL VCDLALRNLVR TEL EL +AV  A  FRLRRVDVVKEVP+FAYLRA+  RL +LQVLELTDVALDD+ML  LGE  S  R      EG A             + N    S  DG   G  V SLRTLVL  C  +S SAFE FL +  GG          R +G+E R                D  A+G      G+ALS VRL GC+AL +RGL LL  G R+RL D+Q  G +L                                          R VKAWGIR AG + +               +L  ++EARGV+LAWA PLP  S  +       L P   + P ++    G      G  GE P  G                       R+ C   CGA P   DA DH+EVCPL+PV CLLRADGC W+G R  RRRHL  C  WQV CP CC +VH
Sbjct:   11 QEWLHGEIAPWLGAEETLRRTCSVCRAWRHWCNNYLTVLHIGNDHQHLHGSSCSVRTAGLSI-PLFLPLVPFALRELSMSGGWTSLGGVELGTIRRGCRLKKLVVTGMRLCSFSYRELLLFEHLEELDISDSQMDIPLPRLRFSEPASGKPDLDGIPQAEPVALSPPRRPSIIFPRARSGRVVEQASGISTPFAPSTASRVGGDRRRSRVSSGGEFGDRAFDSPRFAATLKRLVAVKTRLWNRWDLSTFAALTSLEASFAGRAMLKQLHRKAEMGSRLAELCVCDLALRNLVRPTELTELAEAVGGASTFRLRRVDVVKEVPNFAYLRAIFGRLQNLQVLELTDVALDDSMLAVLGEAFSSARLPPAAVEGAAAAARAQPYNTFFPSANAVAASQQDGGEGGVAVASLRTLVLGRCGGISESAFETFLDLAAGGGVIQAGLVGKRGSGSEERGGSIRNRKNSGGSDGGDAAAVGAAYAGGGLALSRVRLEGCRALGNRGLALLCDGARERLSDIQVAGSLLLTDAGVENLAKSCPRLKHVDLSGCPGVTSNSLTHLLAKCPTLRVVKAWGIRLAGSLGSHAASSSFSSPSAEALALGQSFEARGVELAWAGPLPPPSGRV-----RELPPPREKKPGREQWRRGHGCGVDGGSGERPEPGXXXXXXXXXXXXXXXXXXXXXQGRRPCRLQCGAAPKIEDAEDHLEVCPLAPVDCLLRADGCVWKGTRRQRRRHLAACPMWQVMCPGCCRAVH 756          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig771.15728.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LM48_ECTSI7.080e-15850.50TRAF-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KF56_9PHAE1.040e-12638.56TRAF-type domain-containing protein n=1 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 21..319
e-value: 7.6E-7
score: 29.7
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 483..532
e-value: 3.2E-5
score: 26.1
IPR001293Zinc finger, TRAF-typePROSITEPS50145ZF_TRAFcoord: 501..545
score: 9.083
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 20..318

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig771contigH-paniculata_contig771:4012..19888 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig771.15728.1mRNA_H-paniculata_contig771.15728.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig771 4012..19888 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig771.15728.1 ID=prot_H-paniculata_contig771.15728.1|Name=mRNA_H-paniculata_contig771.15728.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=553bp
DWIFSLDQDWLLNVILPWLGAEELLLRSCDVCPIWRQWCNESLKVLDIGN
DYQRVRSNSTEGTSTTRALRPLFLPLVPSNLLELNLSGTWTTLQARELGT
IRKGCRLRKLGLASVRFASTLKRLTAVKCRLWTKWDLSRFEPLRALEVSF
ANRTTLEQLARKAEAGLGLTELSVCDLALRNLVRATELQELQQAVAAAEI
FRLRRVDVVKEVPHFAYLRAVLVRLNSLQVLELTDVALDDAMLQTLGECL
SLVRTTAEGPATTTTTGGGGASSGNYNGEGGSSNDGSGCGGEVISLRTLV
LESCERVSASAFEAFLSIVGGGGGGSNGDGDRVAGTERREGGASGSSSGG
GSSGGDGGALGNGMALSTVRLIGCKALDDRGLKLLAAGVRDRLKDLQGRM
LRSVKAWGIRAAGRMATASLRAAYEARGVDLAWARPLPSQSSAIIAGVGE
ALLPSSSQLPFQKPGETGGEGGEEPCVGRGSRKGCSFGCGAVPTALDAVD
HVEVCPLSPVACLLRADGCSWRGPRPSRRRHLKECSFWQVKCPVCCHSVH
HSG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR013083Znf_RING/FYVE/PHD
IPR001293Znf_TRAF