prot_H-paniculata_contig76719.15671.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig76719.15671.1
Unique Name	prot_H-paniculata_contig76719.15671.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	188

Homology

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BLAST of mRNA_H-paniculata_contig76719.15671.1 vs. uniprot
Match: E6ZEQ6_ECTSI (Ribosomal protein S4 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=E6ZEQ6_ECTSI)

HSP 1 Score: 384 bits (987), Expect = 4.710e-134
Identity = 185/188 (98.40%), Postives = 185/188 (98.40%), Query Frame = 0

Query:    1 MRLKNRYKSCLWSRTNIWGDLLSKEKTFLRPKWDSIIAILRSQKRRHRPLININRYRHPICHDYRFLKPRTRPNQVFKYNRIGYRNTLSLLLCLKRFYGDLGHKAFKGFCQSGFKSKDSSLKLLSSLEGRLDMCLYRLGFFHSIYYSRQAILHNKVLKKEKKIGHGGFVLQKGDFVEFCPTQRAAIRA 188
            MRLKNRYKSCLWSRTNIWGDLLSKEKTFLRPKWDSIIAILRSQKRRHRPLININRYRHPICHDYRFLKPRTRPNQVFKYNRIGYRNTLSLLLCLKRFYGDLGHKAFKGFCQSGFKSKDSSLKLLSSLEGRLDMCLYRLGFFHSIYYSRQAILHNKVL   KKIGHGGFVLQKGDFVEFCPTQRAAIRA
Sbjct:    1 MRLKNRYKSCLWSRTNIWGDLLSKEKTFLRPKWDSIIAILRSQKRRHRPLININRYRHPICHDYRFLKPRTRPNQVFKYNRIGYRNTLSLLLCLKRFYGDLGHKAFKGFCQSGFKSKDSSLKLLSSLEGRLDMCLYRLGFFHSIYYSRQAILHNKVLVNGKKIGHGGFVLQKGDFVEFCPTQRAAIRA 188

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BLAST of mRNA_H-paniculata_contig76719.15671.1 vs. uniprot
Match: A0A089MX47_PETFA (Ribosomal protein S4 n=2 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A089MX47_PETFA)

HSP 1 Score: 337 bits (865), Expect = 1.790e-115
Identity = 157/188 (83.51%), Postives = 172/188 (91.49%), Query Frame = 0

Query:    1 MRLKNRYKSCLWSRTNIWGDLLSKEKTFLRPKWDSIIAILRSQKRRHRPLININRYRHPICHDYRFLKPRTRPNQVFKYNRIGYRNTLSLLLCLKRFYGDLGHKAFKGFCQSGFKSKDSSLKLLSSLEGRLDMCLYRLGFFHSIYYSRQAILHNKVLKKEKKIGHGGFVLQKGDFVEFCPTQRAAIRA 188
            MR KN+YKSCLWSRTNIWGDLL+KE+TFLRPKWDS+IAILRSQKRRHRPL+NINRYRHPICHDYR+LKPR+R NQVFKYNR+GYRNTLSLLLCL+RFYGDL HK+FK FC   FKSKD S  LLS+LEGRLD+CLYRLGFFHSIYYSRQAILHNKVL   KKIGH GF+LQKGDFVEFC +QR AI+A
Sbjct:    1 MRFKNKYKSCLWSRTNIWGDLLAKEETFLRPKWDSMIAILRSQKRRHRPLVNINRYRHPICHDYRYLKPRSRANQVFKYNRVGYRNTLSLLLCLRRFYGDLSHKSFKNFCHPAFKSKDPSQNLLSALEGRLDICLYRLGFFHSIYYSRQAILHNKVLINGKKIGHCGFILQKGDFVEFCSSQRPAIKA 188

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BLAST of mRNA_H-paniculata_contig76719.15671.1 vs. uniprot
Match: A0A0U1V7R9_9PHAE (Ribosomal protein S4 n=1 Tax=Colpomenia peregrina TaxID=27965 RepID=A0A0U1V7R9_9PHAE)

HSP 1 Score: 332 bits (851), Expect = 2.420e-113
Identity = 154/188 (81.91%), Postives = 171/188 (90.96%), Query Frame = 0

Query:    1 MRLKNRYKSCLWSRTNIWGDLLSKEKTFLRPKWDSIIAILRSQKRRHRPLININRYRHPICHDYRFLKPRTRPNQVFKYNRIGYRNTLSLLLCLKRFYGDLGHKAFKGFCQSGFKSKDSSLKLLSSLEGRLDMCLYRLGFFHSIYYSRQAILHNKVLKKEKKIGHGGFVLQKGDFVEFCPTQRAAIRA 188
            MR KN+YKSCLWSRTNIWGDLL+KE+TFLRPKWDS+IAILRSQKRRHRPL+NI+RYRHPICHDY++LKPR+R NQVFKYNRIGYRNTLS+L CL+RFYGDL HK FK FC+   KSKD S  LL+SLEGRLD+CLYRLGFFHSIYYSRQAILHNKVL   KKIGH GFVLQKGD+VEFCP+QR AI+A
Sbjct:    1 MRFKNKYKSCLWSRTNIWGDLLAKEETFLRPKWDSMIAILRSQKRRHRPLVNIDRYRHPICHDYKYLKPRSRANQVFKYNRIGYRNTLSILFCLRRFYGDLNHKMFKNFCKPALKSKDPSQMLLNSLEGRLDICLYRLGFFHSIYYSRQAILHNKVLINGKKIGHCGFVLQKGDYVEFCPSQRGAIKA 188

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BLAST of mRNA_H-paniculata_contig76719.15671.1 vs. uniprot
Match: A0A0U1V7B3_SCYLO (Ribosomal protein S4 n=1 Tax=Scytosiphon lomentaria TaxID=27967 RepID=A0A0U1V7B3_SCYLO)

HSP 1 Score: 327 bits (839), Expect = 1.630e-111
Identity = 151/187 (80.75%), Postives = 172/187 (91.98%), Query Frame = 0

Query:    1 MRLKNRYKSCLWSRTNIWGDLLSKEKTFLRPKWDSIIAILRSQKRRHRPLININRYRHPICHDYRFLKPRTRPNQVFKYNRIGYRNTLSLLLCLKRFYGDLGHKAFKGFCQSGFKSKDSSLKLLSSLEGRLDMCLYRLGFFHSIYYSRQAILHNKVLKKEKKIGHGGFVLQKGDFVEFCPTQRAAIR 187
            MR KN+YKSCLWSRT+IWGDLL+KE+TFLRPKWDS+IAILRSQKRRHRPL+NINRYRH +CH+Y+++KPR+R NQVFKYNR+GYRNTLSLL CL+RFYGDL HK+FK FC+  FKSKD S KLLS+LEGRLD+CLYRLGFFHSIYYSRQAILHNKVL   KKIGH  FVLQKGD+VEFCP+QR+AIR
Sbjct:    1 MRFKNKYKSCLWSRTDIWGDLLAKEETFLRPKWDSMIAILRSQKRRHRPLVNINRYRHRLCHNYKYIKPRSRANQVFKYNRVGYRNTLSLLFCLRRFYGDLSHKSFKNFCRPAFKSKDPSQKLLSALEGRLDICLYRLGFFHSIYYSRQAILHNKVLINGKKIGHCCFVLQKGDYVEFCPSQRSAIR 187

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BLAST of mRNA_H-paniculata_contig76719.15671.1 vs. uniprot
Match: A0A3G5FPT6_9PHAE (Ribosomal protein S4 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A3G5FPT6_9PHAE)

HSP 1 Score: 324 bits (830), Expect = 3.810e-110
Identity = 152/188 (80.85%), Postives = 167/188 (88.83%), Query Frame = 0

Query:    1 MRLKNRYKSCLWSRTNIWGDLLSKEKTFLRPKWDSIIAILRSQKRRHRPLININRYRHPICHDYRFLKPRTRPNQVFKYNRIGYRNTLSLLLCLKRFYGDLGHKAFKGFCQSGFKSKDSSLKLLSSLEGRLDMCLYRLGFFHSIYYSRQAILHNKVLKKEKKIGHGGFVLQKGDFVEFCPTQRAAIRA 188
            MR KNRYKSCLWSRTNIWGDLL+KE TFLRPKWD+IIAILRSQ+RRHRPL+NI RYRHPICH+Y+ LKPRTR NQVFKYNR GYRNTLSL+ CL+RFYGDL HK FK FC+  FK +D S +LLSSLEGRLDM LYRLGFFHSIYYSRQAILHNKVL   +KIG+G F+LQKGD VEFCPTQR+AIRA
Sbjct:    1 MRFKNRYKSCLWSRTNIWGDLLAKEHTFLRPKWDTIIAILRSQRRRHRPLVNIYRYRHPICHNYKLLKPRTRANQVFKYNRFGYRNTLSLVFCLRRFYGDLSHKGFKNFCKPFFKLRDPSQRLLSSLEGRLDMSLYRLGFFHSIYYSRQAILHNKVLVNGEKIGYGSFILQKGDLVEFCPTQRSAIRA 188

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BLAST of mRNA_H-paniculata_contig76719.15671.1 vs. uniprot
Match: A0A1I9LW85_9PHAE (Ribosomal protein S4 n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LW85_9PHAE)

HSP 1 Score: 320 bits (821), Expect = 8.920e-109
Identity = 152/188 (80.85%), Postives = 165/188 (87.77%), Query Frame = 0

Query:    1 MRLKNRYKSCLWSRTNIWGDLLSKEKTFLRPKWDSIIAILRSQKRRHRPLININRYRHPICHDYRFLKPRTRPNQVFKYNRIGYRNTLSLLLCLKRFYGDLGHKAFKGFCQSGFKSKDSSLKLLSSLEGRLDMCLYRLGFFHSIYYSRQAILHNKVLKKEKKIGHGGFVLQKGDFVEFCPTQRAAIRA 188
            MR K RYKSCLWSRTNIWG+LLSKEKTFLRPKWD+II+ILRSQ+RRHRPL    RYRHPICHDY++L PR R NQVFKYNR GYRNTLSLL C++RFYGDL HK+FK FC+  FK KD SLKLL +LEGRLDMCLYRLGFFHSIYYS QAILHNKVL   KKIG+GGFVLQKGD+VEFCPTQR AIRA
Sbjct:    1 MRFKKRYKSCLWSRTNIWGNLLSKEKTFLRPKWDTIISILRSQRRRHRPLGKPKRYRHPICHDYKYLSPRLRSNQVFKYNRRGYRNTLSLLFCIRRFYGDLSHKSFKKFCRPFFKFKDPSLKLLGALEGRLDMCLYRLGFFHSIYYSGQAILHNKVLVNGKKIGYGGFVLQKGDYVEFCPTQREAIRA 188

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BLAST of mRNA_H-paniculata_contig76719.15671.1 vs. uniprot
Match: W5RG02_COSCS (Ribosomal protein S4 n=9 Tax=Laminariales TaxID=2886 RepID=W5RG02_COSCS)

HSP 1 Score: 320 bits (821), Expect = 8.920e-109
Identity = 149/188 (79.26%), Postives = 166/188 (88.30%), Query Frame = 0

Query:    1 MRLKNRYKSCLWSRTNIWGDLLSKEKTFLRPKWDSIIAILRSQKRRHRPLININRYRHPICHDYRFLKPRTRPNQVFKYNRIGYRNTLSLLLCLKRFYGDLGHKAFKGFCQSGFKSKDSSLKLLSSLEGRLDMCLYRLGFFHSIYYSRQAILHNKVLKKEKKIGHGGFVLQKGDFVEFCPTQRAAIRA 188
            MR K+RYKSCLWSRT+IWGDLLSKEKTFLRPKWDSII +L SQKRRHRPL NINRYRHP+CHDY F+KPR RPNQ+FKYNR+ YRNTLSLLLC++RFYGDL HKAFK FCQ     K  + KL+ SLEGRLD+ LYRLGFFHSIYYSRQAILHNKVL   +KIG+GGF+LQKGDFVEFCP+QR+AIRA
Sbjct:    1 MRFKHRYKSCLWSRTDIWGDLLSKEKTFLRPKWDSIIGVLGSQKRRHRPLANINRYRHPLCHDYNFVKPRVRPNQIFKYNRLSYRNTLSLLLCIRRFYGDLSHKAFKRFCQPLVSLKTPAQKLIGSLEGRLDISLYRLGFFHSIYYSRQAILHNKVLVNGEKIGYGGFILQKGDFVEFCPSQRSAIRA 188

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BLAST of mRNA_H-paniculata_contig76719.15671.1 vs. uniprot
Match: Q94Z19_PYLLI (Ribosomal protein S4 n=1 Tax=Pylaiella littoralis TaxID=2885 RepID=Q94Z19_PYLLI)

HSP 1 Score: 320 bits (819), Expect = 1.800e-108
Identity = 147/188 (78.19%), Postives = 166/188 (88.30%), Query Frame = 0

Query:    1 MRLKNRYKSCLWSRTNIWGDLLSKEKTFLRPKWDSIIAILRSQKRRHRPLININRYRHPICHDYRFLKPRTRPNQVFKYNRIGYRNTLSLLLCLKRFYGDLGHKAFKGFCQSGFKSKDSSLKLLSSLEGRLDMCLYRLGFFHSIYYSRQAILHNKVLKKEKKIGHGGFVLQKGDFVEFCPTQRAAIRA 188
            MR K++YKSCLWSRTNIWGDLL+KE TFL PKWDS+IAILRSQKRRHRPL+NINRYRHPIC DY FL+PR+R NQVFKYNRIGYRNTLS + CL+RFYGDL HK+FK  CQ  FK K+ SL LL +LEGRLD+CLYRLGFFHSIYYSRQAI HNK++   KK+GH GFVL+KGD+VEFCPTQR+AIRA
Sbjct:    1 MRFKHKYKSCLWSRTNIWGDLLAKEHTFLSPKWDSMIAILRSQKRRHRPLVNINRYRHPICRDYHFLQPRSRSNQVFKYNRIGYRNTLSSIFCLRRFYGDLSHKSFKSLCQPSFKLKNPSLDLLGTLEGRLDICLYRLGFFHSIYYSRQAIQHNKIIVNGKKMGHSGFVLKKGDYVEFCPTQRSAIRA 188

[Close]

BLAST of mRNA_H-paniculata_contig76719.15671.1 vs. uniprot
Match: A0A8F0K0K8_9PHAE (Ribosomal protein S4 n=3 Tax=Laminariales TaxID=2886 RepID=A0A8F0K0K8_9PHAE)

HSP 1 Score: 319 bits (817), Expect = 3.620e-108
Identity = 147/188 (78.19%), Postives = 167/188 (88.83%), Query Frame = 0

Query:    1 MRLKNRYKSCLWSRTNIWGDLLSKEKTFLRPKWDSIIAILRSQKRRHRPLININRYRHPICHDYRFLKPRTRPNQVFKYNRIGYRNTLSLLLCLKRFYGDLGHKAFKGFCQSGFKSKDSSLKLLSSLEGRLDMCLYRLGFFHSIYYSRQAILHNKVLKKEKKIGHGGFVLQKGDFVEFCPTQRAAIRA 188
            MR K+RYKSCLWSRT+IWGDLLSK+KTFLRPKWDSII +L SQKRRHRPL NINRYR+P+CHDY FLKPR RPNQ+FKYNRI YRNTLSLLLC++RFYGDL HKAFK FC+S    K+   KL+ +LEGRLD+ LYRLGFFHSIYYSRQAILH+KVL   K+IGHGGF+LQKGDFVEFCP+QR++IRA
Sbjct:    1 MRFKHRYKSCLWSRTDIWGDLLSKDKTFLRPKWDSIIGVLSSQKRRHRPLANINRYRYPLCHDYNFLKPRVRPNQIFKYNRISYRNTLSLLLCIRRFYGDLNHKAFKNFCKSLVSLKNPPQKLIGALEGRLDVSLYRLGFFHSIYYSRQAILHSKVLVNGKRIGHGGFILQKGDFVEFCPSQRSSIRA 188

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BLAST of mRNA_H-paniculata_contig76719.15671.1 vs. uniprot
Match: S4S3Q3_LAMHY (Ribosomal protein S4 n=35 Tax=Laminariales TaxID=2886 RepID=S4S3Q3_LAMHY)

HSP 1 Score: 315 bits (808), Expect = 8.480e-107
Identity = 147/188 (78.19%), Postives = 163/188 (86.70%), Query Frame = 0

Query:    1 MRLKNRYKSCLWSRTNIWGDLLSKEKTFLRPKWDSIIAILRSQKRRHRPLININRYRHPICHDYRFLKPRTRPNQVFKYNRIGYRNTLSLLLCLKRFYGDLGHKAFKGFCQSGFKSKDSSLKLLSSLEGRLDMCLYRLGFFHSIYYSRQAILHNKVLKKEKKIGHGGFVLQKGDFVEFCPTQRAAIRA 188
            MR K+RYKSCLWSRT+IWGDLLSKEKTFLRPKWDSII +L SQKRRHRPL NINRYRHP+CHDY FLKPR RPNQ FKYNRI YRNTLS+LL ++RFYGDL HKAFK FCQ     K+   KL+ +LEGRLD+ LYRLGFFHSIYYSRQ+I HNKVL   KKIGHGGF+LQKGD+VEFCP+QR+AIRA
Sbjct:    1 MRFKHRYKSCLWSRTDIWGDLLSKEKTFLRPKWDSIIGVLGSQKRRHRPLANINRYRHPLCHDYNFLKPRVRPNQTFKYNRISYRNTLSILLSIRRFYGDLSHKAFKRFCQPLVSLKNPPQKLIGALEGRLDISLYRLGFFHSIYYSRQSIFHNKVLVNGKKIGHGGFILQKGDYVEFCPSQRSAIRA 188

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig76719.15671.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig76719.15671.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
E6ZEQ6_ECTSI	4.710e-134	98.40	Ribosomal protein S4 n=2 Tax=Ectocarpus siliculosu...	[more]
A0A089MX47_PETFA	1.790e-115	83.51	Ribosomal protein S4 n=2 Tax=Scytosiphonaceae TaxI...	[more]
A0A0U1V7R9_9PHAE	2.420e-113	81.91	Ribosomal protein S4 n=1 Tax=Colpomenia peregrina ...	[more]
A0A0U1V7B3_SCYLO	1.630e-111	80.75	Ribosomal protein S4 n=1 Tax=Scytosiphon lomentari...	[more]
A0A3G5FPT6_9PHAE	3.810e-110	80.85	Ribosomal protein S4 n=1 Tax=Cladosiphon okamuranu...	[more]
A0A1I9LW85_9PHAE	8.920e-109	80.85	Ribosomal protein S4 n=1 Tax=Pleurocladia lacustri...	[more]
W5RG02_COSCS	8.920e-109	79.26	Ribosomal protein S4 n=9 Tax=Laminariales TaxID=28...	[more]
Q94Z19_PYLLI	1.800e-108	78.19	Ribosomal protein S4 n=1 Tax=Pylaiella littoralis ...	[more]
A0A8F0K0K8_9PHAE	3.620e-108	78.19	Ribosomal protein S4 n=3 Tax=Laminariales TaxID=28...	[more]
S4S3Q3_LAMHY	8.480e-107	78.19	Ribosomal protein S4 n=35 Tax=Laminariales TaxID=2...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002942	RNA-binding S4 domain	SMART	SM00363	s4_6	coord: 129..187 e-value: 0.0089 score: 25.2
IPR002942	RNA-binding S4 domain	PROSITE	PS50889	S4	coord: 129..185 score: 9.421
None	No IPR available	GENE3D	1.10.1050.10		coord: 94..129 e-value: 9.2E-12 score: 46.9
None	No IPR available	SUPERFAMILY	55174	Alpha-L RNA-binding motif	coord: 39..184
IPR036986	RNA-binding S4 domain superfamily	GENE3D	3.10.290.10		coord: 130..182 e-value: 9.2E-12 score: 46.9
IPR005709	Ribosomal protein S4, bacterial-type	PANTHER	PTHR11831:SF4	37S RIBOSOMAL PROTEIN NAM9, MITOCHONDRIAL	coord: 107..184
IPR022801	Ribosomal protein S4/S9	PANTHER	PTHR11831	30S 40S RIBOSOMAL PROTEIN	coord: 107..184

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig76719	contig	H-paniculata_contig76719:3..566 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig76719.15671.1	mRNA_H-paniculata_contig76719.15671.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig76719 3..566 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig76719.15671.1 ID=prot_H-paniculata_contig76719.15671.1|Name=mRNA_H-paniculata_contig76719.15671.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=188bp
MRLKNRYKSCLWSRTNIWGDLLSKEKTFLRPKWDSIIAILRSQKRRHRPL
ININRYRHPICHDYRFLKPRTRPNQVFKYNRIGYRNTLSLLLCLKRFYGD
LGHKAFKGFCQSGFKSKDSSLKLLSSLEGRLDMCLYRLGFFHSIYYSRQA
ILHNKVLKKEKKIGHGGFVLQKGDFVEFCPTQRAAIRA

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002942	S4_RNA-bd
IPR036986	S4_RNA-bd_sf
IPR005709	Ribosomal_S4_bac-type
IPR022801	Ribosomal_S4/S9