prot_H-paniculata_contig762.15615.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig762.15615.1
Unique Nameprot_H-paniculata_contig762.15615.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length269
Homology
BLAST of mRNA_H-paniculata_contig762.15615.1 vs. uniprot
Match: Q7XTU6_ORYSJ (OSJNBb0034I13.10 protein n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q7XTU6_ORYSJ)

HSP 1 Score: 103 bits (256), Expect = 4.070e-21
Identity = 89/279 (31.90%), Postives = 124/279 (44.44%), Query Frame = 0
Query:    3 QSKMITTNMVRRYWAEAARAAVYCLNRVPTRPHNGGTPYEKWHGTTSKLDHLRVFGCIAYVMFQSKQRRKLDEKAWVGVFLGYDEDSPSYRIYNPFS----VLSDDDYDESNSDSEMNDVEPAVED------------APSAGTAAPTQGEHHEAVQHSRDRSPIRTRARGRENRE--------------EDPGATARVAKVEGTGNLTGA-----------ISKGEPKSAVEALNGPEAEQWHAVMEREWGALVENGTWESEDPGRLPAGRKAIRTKW 240
            +S +    +  R+W EA  AAVY LNR PT+  +G TPYE WHG    ++HLRVFGC+ YV       RKLD++    VF+GY++ S +YR+Y+P +    V  D  +DE+ + +  +  + A E+            APS   A    G   +A       SP+ T       R               E  G   R  +V+   + T             I+  EP S VEA    + E W   M  E  ++ EN TW   +   LPAG KAI  KW
Sbjct:  692 RSMLKAAGLPARFWGEAVVAAVYVLNRSPTKALDGVTPYEAWHGRRPSVEHLRVFGCVGYVKTVKPNLRKLDDRGTRMVFIGYEQGSKAYRMYDPVAQRVCVSRDVVFDETATWAWRDPEDAATEEEEFTVDFFVSPVAPSVADAGEQTGTPVQAGV-----SPVSTGVLSSPPRAPNGEFCTPPTSVTPETDGGPVRYRRVQDILSTTEPVLDFDYSDQCLIATEEPTSFVEA---EKHECWRRAMVEELRSVEENQTWSLAE---LPAGHKAIGLKW 959          
BLAST of mRNA_H-paniculata_contig762.15615.1 vs. uniprot
Match: A0A1R3HQR7_COCAP (Integrase catalytic domain-containing protein n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3HQR7_COCAP)

HSP 1 Score: 101 bits (252), Expect = 1.330e-20
Identity = 44/97 (45.36%), Postives = 60/97 (61.86%), Query Frame = 0
Query:    1 MTQSKMITTNMVRRYWAEAARAAVYCLNRVPTRPHNGGTPYEKWHGTTSKLDHLRVFGCIAYVMFQSKQRRKLDEKAWVGVFLGYDEDSPSYRIYNP 97
            M +  +    + +++WAEA   AVY LNR+PT+     TPYE W G    + HL+VFGC+ Y    + +R KLDEKA +GVF+GY  +   YRIYNP
Sbjct:  406 MARCLLFEKKLPKKFWAEAVNTAVYLLNRLPTKALKNLTPYEGWSGAKPSVTHLKVFGCVCYTWIPNVKRGKLDEKAQIGVFVGYSIEVKGYRIYNP 502          
BLAST of mRNA_H-paniculata_contig762.15615.1 vs. uniprot
Match: A0A0V1MB43_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Trichinella TaxID=6333 RepID=A0A0V1MB43_9BILA)

HSP 1 Score: 101 bits (252), Expect = 1.350e-20
Identity = 75/240 (31.25%), Postives = 111/240 (46.25%), Query Frame = 0
Query:    3 QSKMITTNMVRRYWAEAARAAVYCLNRVPTRPHNGGTPYEKWHGTTSKLDHLRVFGCIAYVMFQSKQRRKLDEKAWVGVFLGYDEDSPSYRIYNPFSVLSDDDYD-ESNSDSEMNDVEPAVEDAPSAGTAAPTQGE-HHEAVQHSRDRSPIRTRARGRENREEDPGATARVAKVEGTGNLTGAISKGEPKSAVEALNGPEAEQWHAVMEREWGALVENGTWESEDPGRLPAGRKAIRTKW 240
            +S +   N+ +  WAEA   A Y LNR+P R     TPYEKW G    ++HLR+FGC AYV    + R+K D KA   +F+GY   +  +R+++      D+  D + N   +   V    E+     TA   +   H E +   +       R  G  N+ +  G   ++     +   T  ++  +P +  EAL G  AE+W   M  E  AL  N TW   D   LP+ RK I+ KW
Sbjct:  589 RSMLHARNLPKGLWAEAVHTAAYLLNRIPNRKETTKTPYEKWFGKRPTVEHLRIFGCDAYVHIPDQHRKKFDRKARKVIFVGYGPSNKMFRVFDTNKHRVDEVTDVKFNESLQKRLVLIDGEEEIWMQTADKDEDNIHKEDIPDDKTEKRGPGRPPGSRNKIKVIGNPLKMELRSKSTERTAMLAAADPLTEEEALRGANAEKWREAMLEEITALHMNNTWILTD---LPSDRKTIQCKW 825          
BLAST of mRNA_H-paniculata_contig762.15615.1 vs. uniprot
Match: A0A0V0VEL0_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=5 Tax=Trichinella TaxID=6333 RepID=A0A0V0VEL0_9BILA)

HSP 1 Score: 100 bits (250), Expect = 2.000e-20
Identity = 73/242 (30.17%), Postives = 107/242 (44.21%), Query Frame = 0
Query:    8 TTNMVRRYWAEAARAAVYCLNRVPTRPHNGGTPYEKWHGTTSKLDHLRVFGCIAYVMFQSKQRRKLDEKAWVGVFLGYDEDSPSYRIYNPFSVLSDDDYDESNSDSEMNDVEPAVEDAPSAGTAAPTQGEHHEAVQHSRDRSPIRTRARGRENREEDPGATARVAKVEGTGNL---------TGAISKGEPKSAVEALNGPEAEQWHAVMEREWGALVENGTWESEDPGRLPAGRKAIRTKW 240
            T N+ R  WAEA   A Y LNR+P R     TPYE+W G    ++HLR+FGC AYV    + RRK D KA   +F+GY   +  +R+++      D+  D   ++S    +   + D            +  + ++          R  GR      PG+  ++  +     +         T  ++  +P +  EAL G  AE+W   M  E  AL  N TW   D   LPA RK I+ KW
Sbjct:   84 TRNLPRCLWAEAVHTAAYLLNRIPNRKEITKTPYEEWFGRRPTVEHLRIFGCDAYVHIPDQHRRKFDPKARKVIFVGYGPSNKMFRVFDTNKHRVDEVTDVQFNESLQKRL--VLIDGEEDSWMQTADKDEDDFLEDDTTDDKTEKRGPGR-----PPGSKNKIKVISNPLKMELRSKSTERTAMLAAADPLTEEEALEGANAEKWKEAMLEEISALHMNDTWILTD---LPADRKTIQCKW 315          
BLAST of mRNA_H-paniculata_contig762.15615.1 vs. uniprot
Match: A0A5N6P2G7_9ASTR (Protein DETOXIFICATION n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6P2G7_9ASTR)

HSP 1 Score: 100 bits (248), Expect = 4.400e-20
Identity = 43/99 (43.43%), Postives = 62/99 (62.63%), Query Frame = 0
Query:    1 MTQSKMITTNMVRRYWAEAARAAVYCLNRVPTRPHNGGTPYEKWHGTTSKLDHLRVFGCIAYVMFQSKQRRKLDEKAWVGVFLGYDEDSPSYRIYNPFS 99
            +T+S +    M+  +WAE    AVY LNR PT+     TP E+W G    + HLR+FGC+AY +  S+QR+KLD ++   +F+GY + S  YR+YNP S
Sbjct:  863 LTRSMLKHKEMLNHFWAEGVATAVYLLNRSPTKARPNKTPVEEWGGIKPSVQHLRIFGCVAYSLIPSQQRQKLDHRSEKCLFVGYSQQSNGYRLYNPIS 961          
BLAST of mRNA_H-paniculata_contig762.15615.1 vs. uniprot
Match: A0A4Y2LAF7_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2LAF7_ARAVE)

HSP 1 Score: 98.2 bits (243), Expect = 4.870e-20
Identity = 47/95 (49.47%), Postives = 59/95 (62.11%), Query Frame = 0
Query:    1 MTQSKMITTNMVRRYWAEAARAAVYCLNRVPTRPHNGGTPYEKWHGTTSKLDHLRVFGCIAYVMFQSKQRRKLDEKAWVGVFLGYDEDSPSYRIY 95
            M +  +   N+ +R+WAEAA  A Y  NR+PT+P    TPY  W      L H+RVFGC AY   Q ++RRKLD+KA  G+FLGYD  S  YRIY
Sbjct:  121 MARCLLSDANLSQRFWAEAAMTATYLQNRLPTKPKRK-TPYVLWANRKPDLSHIRVFGCKAYACIQKQKRRKLDDKAVEGIFLGYDYRSKGYRIY 214          
BLAST of mRNA_H-paniculata_contig762.15615.1 vs. uniprot
Match: Q60DG5_ORYSJ (Putative polyprotein n=3 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q60DG5_ORYSJ)

HSP 1 Score: 99.8 bits (247), Expect = 5.960e-20
Identity = 44/97 (45.36%), Postives = 62/97 (63.92%), Query Frame = 0
Query:    3 QSKMITTNMVRRYWAEAARAAVYCLNRVPTRPHNGGTPYEKWHGTTSKLDHLRVFGCIAYVMFQSKQRRKLDEKAWVGVFLGYDEDSPSYRIYNPFS 99
            +S +    M  ++W EA  AAVY LNR PT+  +G TPYE WHG    ++HL+VFGC+ YV       RKLD++    VF+GY++ S +YR+Y+P S
Sbjct:  355 RSMLKAAGMPAQFWGEAVVAAVYLLNRSPTKSLDGVTPYEAWHGRRPSVEHLKVFGCVGYVKTVKPNLRKLDDRGTRMVFIGYEQGSKAYRMYDPVS 451          
BLAST of mRNA_H-paniculata_contig762.15615.1 vs. uniprot
Match: A0A0V1FB66_TRIPS (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella pseudospiralis TaxID=6337 RepID=A0A0V1FB66_TRIPS)

HSP 1 Score: 99.4 bits (246), Expect = 7.310e-20
Identity = 72/231 (31.17%), Postives = 106/231 (45.89%), Query Frame = 0
Query:   10 NMVRRYWAEAARAAVYCLNRVPTRPHNGGTPYEKWHGTTSKLDHLRVFGCIAYVMFQSKQRRKLDEKAWVGVFLGYDEDSPSYRIYNPFSVLSDDDYDESNSDSEMNDVEPAVEDAPSAGTAAPTQGEHHEAVQHSRDRSPIRTRARGRENREEDPGATARVAKVEGTGNLTGAISKGEPKSAVEALNGPEAEQWHAVMEREWGALVENGTWESEDPGRLPAGRKAIRTKW 240
            N+ R  WAEA   A Y LNR+P R     TPYE+W G    ++HLR+FGC AYV    + RRK D KA   +F+GY   +  +R++N      D+  D   ++S    +   ++    +      + E            P   R  G +N+ +      ++     +   TG ++  +P +  EAL G  AE+W   M  E  AL  N TW   D   LPA +K I+ KW
Sbjct:  299 NLPRCLWAEAVHTAAYLLNRIPHRKEITKTPYEEWFGRRPTVEHLRIFGCDAYVHIPDQHRRKFDPKARKVIFVGYGPSNKMFRVFNTNKHQVDEVMDVQFNESLQKRLV-LIDGEEDSWMQTADKDEDDNTXXXXXXXGP--GRPPGSKNKIKVISNPLKMELRSKSTERTGMLAAADPLTEEEALGGANAEKWKEAMLEEISALHMNDTWILTD---LPADQKTIQCKW 523          
BLAST of mRNA_H-paniculata_contig762.15615.1 vs. uniprot
Match: A0A0V0WLX6_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella sp. T6 TaxID=92179 RepID=A0A0V0WLX6_9BILA)

HSP 1 Score: 99.4 bits (246), Expect = 7.740e-20
Identity = 73/242 (30.17%), Postives = 107/242 (44.21%), Query Frame = 0
Query:    8 TTNMVRRYWAEAARAAVYCLNRVPTRPHNGGTPYEKWHGTTSKLDHLRVFGCIAYVMFQSKQRRKLDEKAWVGVFLGYDEDSPSYRIYNPFSVLSDDDYDESNSDSEMNDVEPAVEDAPSAGTAAPTQGEHHEAVQHSRDRSPIRTRARGRENREEDPGATARVAKVEGTGNL---------TGAISKGEPKSAVEALNGPEAEQWHAVMEREWGALVENGTWESEDPGRLPAGRKAIRTKW 240
            T N+ R  WAEA   A Y LNR+P R     TPYE+W G    ++HLR+FGC AYV    + RRK D KA   +F+GY   +  +R+++      D   D   ++S    +   + D            +  + +++         R  GR      PG+  ++  +     +         T  ++  +P +  EAL G  AE+W   M  E  AL  N TW   D   LPA RK I+ KW
Sbjct:  528 TRNLPRCLWAEAVHTAAYLLNRIPNRKEITKTPYEEWFGRRPTVEHLRIFGCDAYVHIPDQHRRKFDPKARKVIFVGYGPSNKMFRVFDTNKHRVDKVTDVQFNESLQKRL--VLIDGEEDSWMQTADKDEDDFLEYDITDDKTEKRGPGR-----PPGSKNKIKVISNPLKMELRSKSTERTAMLAAADPLTEEEALEGANAEKWKESMLEEISALHMNDTWILTD---LPADRKTIQCKW 759          
BLAST of mRNA_H-paniculata_contig762.15615.1 vs. uniprot
Match: A0A0V1KQY5_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella nativa TaxID=6335 RepID=A0A0V1KQY5_9BILA)

HSP 1 Score: 99.4 bits (246), Expect = 7.940e-20
Identity = 73/242 (30.17%), Postives = 107/242 (44.21%), Query Frame = 0
Query:    8 TTNMVRRYWAEAARAAVYCLNRVPTRPHNGGTPYEKWHGTTSKLDHLRVFGCIAYVMFQSKQRRKLDEKAWVGVFLGYDEDSPSYRIYNPFSVLSDDDYDESNSDSEMNDVEPAVEDAPSAGTAAPTQGEHHEAVQHSRDRSPIRTRARGRENREEDPGATARVAKVEGTGNL---------TGAISKGEPKSAVEALNGPEAEQWHAVMEREWGALVENGTWESEDPGRLPAGRKAIRTKW 240
            T N+ R  WAEA   A Y LNR+P R     TPYE+W G    ++HLR+FGC AYV    + RRK D KA   +F+GY   +  +R+++      D   D   ++S    +   + D            +  + +++         R  GR      PG+  ++  +     +         T  ++  +P +  EAL G  AE+W   M  E  AL  N TW   D   LPA RK I+ KW
Sbjct:  403 TRNLPRCLWAEAVHTAAYLLNRIPNRKEITKTPYEEWFGRRPTVEHLRIFGCDAYVHIPDQHRRKFDPKARKVIFVGYGPSNKMFRVFDTNKHRVDKVTDVQFNESLQKRL--VLIDGEEDSWMQTADKDEDDFLEYDITDDKTEKRGPGR-----PPGSKNKIKVISNPLKMELRSKSTERTAMLAAADPLTEEEALEGANAEKWKESMLEEISALHMNDTWILTD---LPADRKTIQCKW 634          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig762.15615.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q7XTU6_ORYSJ4.070e-2131.90OSJNBb0034I13.10 protein n=2 Tax=Oryza sativa subs... [more]
A0A1R3HQR7_COCAP1.330e-2045.36Integrase catalytic domain-containing protein n=1 ... [more]
A0A0V1MB43_9BILA1.350e-2031.25Retrovirus-related Pol polyprotein from transposon... [more]
A0A0V0VEL0_9BILA2.000e-2030.17Retrovirus-related Pol polyprotein from transposon... [more]
A0A5N6P2G7_9ASTR4.400e-2043.43Protein DETOXIFICATION n=1 Tax=Mikania micrantha T... [more]
A0A4Y2LAF7_ARAVE4.870e-2049.47Retrovirus-related Pol polyprotein from transposon... [more]
Q60DG5_ORYSJ5.960e-2045.36Putative polyprotein n=3 Tax=Oryza sativa subsp. j... [more]
A0A0V1FB66_TRIPS7.310e-2031.17Retrovirus-related Pol polyprotein from transposon... [more]
A0A0V0WLX6_9BILA7.740e-2030.17Retrovirus-related Pol polyprotein from transposon... [more]
A0A0V1KQY5_9BILA7.940e-2030.17Retrovirus-related Pol polyprotein from transposon... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 10..240
NoneNo IPR availablePANTHERPTHR11439:SF265coord: 10..240
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 10..48

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig762contigH-paniculata_contig762:28829..29648 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig762.15615.1mRNA_H-paniculata_contig762.15615.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig762 27490..29783 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig762.15615.1 ID=prot_H-paniculata_contig762.15615.1|Name=mRNA_H-paniculata_contig762.15615.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=269bp
MTQSKMITTNMVRRYWAEAARAAVYCLNRVPTRPHNGGTPYEKWHGTTSK
LDHLRVFGCIAYVMFQSKQRRKLDEKAWVGVFLGYDEDSPSYRIYNPFSV
LSDDDYDESNSDSEMNDVEPAVEDAPSAGTAAPTQGEHHEAVQHSRDRSP
IRTRARGRENREEDPGATARVAKVEGTGNLTGAISKGEPKSAVEALNGPE
AEQWHAVMEREWGALVENGTWESEDPGRLPAGRKAIRTKWNQAETEGGRQ
RGTLQSATGGSRFFTGVG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039537Retrotran_Ty1/copia-like
IPR012337RNaseH-like_sf