prot_H-paniculata_contig7616.15608.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig7616.15608.1
Unique Nameprot_H-paniculata_contig7616.15608.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length54
Homology
BLAST of mRNA_H-paniculata_contig7616.15608.1 vs. uniprot
Match: D8LM46_ECTSI (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM46_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 2.820e-23
Identity = 44/53 (83.02%), Postives = 49/53 (92.45%), Query Frame = 0
Query:    1 MHGRVYQCEHMKDSKVKVFASFGGLLMRLIGDQRHVANIEVDSRVFCLLRKNA 53
            MHGRVY+ +  KD+KV+VFASFGGLLMRL GDQRHVANIEVDSRVFCLLR+NA
Sbjct:   92 MHGRVYRFDQQKDTKVQVFASFGGLLMRLTGDQRHVANIEVDSRVFCLLRRNA 144          
BLAST of mRNA_H-paniculata_contig7616.15608.1 vs. uniprot
Match: A0A836CD84_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD84_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.620e-12
Identity = 28/52 (53.85%), Postives = 42/52 (80.77%), Query Frame = 0
Query:    1 MHGRVYQCEHMKDSKVKVFASFGGLLMRLIGDQRHVANIEVDSRVFCLLRKN 52
            MHGRV++ E +  ++V+V ASFGGLLMRL G+QRH+ +I +D R++ L+R+N
Sbjct:   94 MHGRVFKYEQLTGTQVQVSASFGGLLMRLTGEQRHLVHISIDQRIYLLIRQN 145          
BLAST of mRNA_H-paniculata_contig7616.15608.1 vs. uniprot
Match: A0A7S2R5B9_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R5B9_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 2.140e-12
Identity = 27/51 (52.94%), Postives = 37/51 (72.55%), Query Frame = 0
Query:    1 MHGRVYQCEHMKDSKVKVFASFGGLLMRLIGDQRHVANIEVDSRVFCLLRK 51
            MHGRVY   H KD  +++  SFGGLL+RL GD RH+ +IE+D  ++CL+ K
Sbjct:   92 MHGRVYGFNHKKDDVIEIDVSFGGLLLRLTGDARHLTSIELDQNIYCLMNK 142          
BLAST of mRNA_H-paniculata_contig7616.15608.1 vs. uniprot
Match: A0A7S2BWL1_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BWL1_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 4.190e-12
Identity = 26/51 (50.98%), Postives = 37/51 (72.55%), Query Frame = 0
Query:    1 MHGRVYQCEHMKDSKVKVFASFGGLLMRLIGDQRHVANIEVDSRVFCLLRK 51
            MHG+VY   H +   +++  SFGGLLMRL GDQRH+  IE+D  ++CL++K
Sbjct:   93 MHGKVYNFNHKEGENIEIDVSFGGLLMRLSGDQRHLVGIELDQSIYCLMKK 143          
BLAST of mRNA_H-paniculata_contig7616.15608.1 vs. uniprot
Match: A0A7S2W3V0_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W3V0_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 6.560e-12
Identity = 29/52 (55.77%), Postives = 40/52 (76.92%), Query Frame = 0
Query:    1 MHGRVYQCEHMKDSKVKVFASFGGLLMRLIGDQRHVANIEVDSRVFCLLRKN 52
            MHGRV+   + K+  V + ASFGGLLMRLIG QRH++NI+ D R++ LL+K+
Sbjct:   98 MHGRVFDISYKKEGAVVIAASFGGLLMRLIGHQRHLSNIQPDMRLYVLLKKD 149          
BLAST of mRNA_H-paniculata_contig7616.15608.1 vs. uniprot
Match: A0A024G723_9STRA (Uncharacterized protein n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024G723_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 8.090e-12
Identity = 28/51 (54.90%), Postives = 40/51 (78.43%), Query Frame = 0
Query:    1 MHGRVYQCEHMKDSKVKVFASFGGLLMRLIGDQRHVANIEVDSRVFCLLRK 51
            M+G+++Q EH   + V ++ASFGGLLMRL G+QRH+  +  DSR++CLLRK
Sbjct:  127 MYGKIFQYEHEGGNNVAIYASFGGLLMRLRGEQRHLHLVHNDSRIYCLLRK 177          
BLAST of mRNA_H-paniculata_contig7616.15608.1 vs. uniprot
Match: A0A7S0CGW6_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CGW6_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.330e-11
Identity = 27/52 (51.92%), Postives = 40/52 (76.92%), Query Frame = 0
Query:    1 MHGRVYQCEHMKDSKVKVFASFGGLLMRLIGDQRHVANIEVDSRVFCLLRKN 52
            MHGRV++  + KD  + + ASFGGLLMRL GDQRH++ I+ D R++ L++K+
Sbjct:   99 MHGRVFEILYQKDGMISIHASFGGLLMRLTGDQRHLSAIQPDMRLYILIKKD 150          
BLAST of mRNA_H-paniculata_contig7616.15608.1 vs. uniprot
Match: A0A7S2U8S9_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U8S9_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.810e-11
Identity = 28/52 (53.85%), Postives = 39/52 (75.00%), Query Frame = 0
Query:    1 MHGRVYQCEHMKDSKVKVFASFGGLLMRLIGDQRHVANIEVDSRVFCLLRKN 52
            MHGR++   + KD  V + ASFGGLLMRL GDQRH++N+  D R++ LL+K+
Sbjct:   97 MHGRIFDVGYKKDGVVVIAASFGGLLMRLTGDQRHLSNVMPDMRLYVLLKKD 148          
BLAST of mRNA_H-paniculata_contig7616.15608.1 vs. uniprot
Match: A0A7S2GK34_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GK34_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 3.390e-11
Identity = 26/51 (50.98%), Postives = 36/51 (70.59%), Query Frame = 0
Query:    1 MHGRVYQCEHMKDSKVKVFASFGGLLMRLIGDQRHVANIEVDSRVFCLLRK 51
            MHG+VY   H     ++V  SFGGLLMR+ GDQRH+ NI++D  ++CL+ K
Sbjct:   92 MHGKVYNFNHKSGQFIEVDISFGGLLMRISGDQRHLMNIQLDQNIYCLMSK 142          
BLAST of mRNA_H-paniculata_contig7616.15608.1 vs. uniprot
Match: F0W6P2_9STRA (DNAdirected RNA polymerase I putative n=3 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W6P2_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 6.280e-11
Identity = 28/51 (54.90%), Postives = 39/51 (76.47%), Query Frame = 0
Query:    1 MHGRVYQCEHMKDSKVKVFASFGGLLMRLIGDQRHVANIEVDSRVFCLLRK 51
            M+G+++  EH   + V ++ASFGGLLMRL G+QRH+  +  DSRV+CLLRK
Sbjct:  174 MYGKIFHYEHEGGNNVAIYASFGGLLMRLRGEQRHLHLVHNDSRVYCLLRK 224          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7616.15608.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LM46_ECTSI2.820e-2383.02DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A836CD84_9STRA1.620e-1253.85DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A7S2R5B9_9STRA2.140e-1252.94DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A7S2BWL1_9STRA4.190e-1250.98DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A7S2W3V0_9STRA6.560e-1255.77DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A024G723_9STRA8.090e-1254.90Uncharacterized protein n=2 Tax=Albugo candida Tax... [more]
A0A7S0CGW6_9STRA1.330e-1151.92DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A7S2U8S9_9STRA1.810e-1153.85DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A7S2GK34_9STRA3.390e-1150.98DNA-directed RNA polymerases I, II, and III subuni... [more]
F0W6P2_9STRA6.280e-1154.90DNAdirected RNA polymerase I putative n=3 Tax=Albu... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005570RNA polymerase, Rpb8PFAMPF03870RNA_pol_Rpb8coord: 1..51
e-value: 1.6E-16
score: 60.8
IPR005570RNA polymerase, Rpb8PANTHERPTHR10917DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3coord: 1..51
NoneNo IPR availableGENE3D2.40.50.140coord: 1..53
e-value: 3.0E-16
score: 61.5
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 1..51

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7616contigH-paniculata_contig7616:1633..1794 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7616.15608.1mRNA_H-paniculata_contig7616.15608.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig7616 702..2244 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig7616.15608.1 ID=prot_H-paniculata_contig7616.15608.1|Name=mRNA_H-paniculata_contig7616.15608.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=54bp
MHGRVYQCEHMKDSKVKVFASFGGLLMRLIGDQRHVANIEVDSRVFCLLR
KNA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005570RNA_pol_Rpb8
IPR012340NA-bd_OB-fold