prot_H-paniculata_contig7607.15599.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig7607.15599.1
Unique Nameprot_H-paniculata_contig7607.15599.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length120
Homology
[Close]
BLAST of mRNA_H-paniculata_contig7607.15599.1 vs. uniprot
Match: A0A835ZHW9_9STRA (Cytochrome c oxidase assembly protein COX20, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHW9_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 4.290e-12
Identity = 31/74 (41.89%), Postives = 45/74 (60.81%), Query Frame = 0 
Query:   28 FSNEPCFRNTFLWGIAAGALMGMHRARVGSTLARACDAAVVTTAVGSCVSWWACNREMRRKQNLIENAFRAQGI 101
            F+  PC R+  L G + GALMG+HR R+G    +A DAAV+T    S VSW+ CN+++  ++  +E    AQG 
Sbjct:   11 FAGIPCMRSALLTGFSCGALMGLHRIRMGRPFVKAVDAAVLTFVATSGVSWFLCNQKLIAQERALEREMEAQGF 84
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7607.15599.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZHW9_9STRA4.290e-1241.89Cytochrome c oxidase assembly protein COX20, mitoc... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022533Cox20PFAMPF12597DUF3767coord: 23..96
e-value: 4.8E-13
score: 48.8
IPR022533Cox20PANTHERPTHR31586CYTOCHROME C OXIDASE PROTEIN 20coord: 25..92
NoneNo IPR availablePANTHERPTHR31586:SF1CYTOCHROME C OXIDASE ASSEMBLY PROTEIN COX20, MITOCHONDRIALcoord: 25..92

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7607contigH-paniculata_contig7607:6494..9549 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7607.15599.1mRNA_H-paniculata_contig7607.15599.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig7607 5533..9653 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig7607.15599.1 ID=prot_H-paniculata_contig7607.15599.1|Name=mRNA_H-paniculata_contig7607.15599.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=120bp
MSEAGSGSGGRGITNPYVVRVLSPLHNFSNEPCFRNTFLWGIAAGALMGM
HRARVGSTLARACDAAVVTTAVGSCVSWWACNREMRRKQNLIENAFRAQG
ILSADQVPDYQASDDDPPH*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022533Cox20