prot_H-paniculata_contig7599.15591.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig7599.15591.1
Unique Nameprot_H-paniculata_contig7599.15591.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length307
Homology
BLAST of mRNA_H-paniculata_contig7599.15591.1 vs. uniprot
Match: D7FP86_ECTSI (Cnd1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP86_ECTSI)

HSP 1 Score: 209 bits (531), Expect = 3.340e-57
Identity = 145/318 (45.60%), Postives = 190/318 (59.75%), Query Frame = 0
Query:    3 EVQECLWVLKACVCSVPFTSHQDLLVKLSEVLVGISVVAAVNGPAALAELASSTILALVRSGLSCAGXXXXXXXXXFXXXXCSGNGSA-EAAVLQALMPVILMASGKGDVPSRSKDCLKAHDNAIRVATDIATALKRARQQQQELTK------ESQTSDQIHDE--AEKSPLRADE--DRDENSTSPPRDDSIPSLRTQDRGGGEMVKGNEDDG----GAGGKKTKNSLHDPPRFRPVLTMVQHLCVAAPERAEGRARLASGIAALLPVLEEMDRTRFVAFLAKFSRGSRINHRGFAVELSARLVMSTWPWAVSNNSN 305
            EV  CL +LK+C+  VP  SHQ+L+VKLSEVLVG+SVVAA+ GPA+LA+LAS++++ LV                       SG+    +  VLQALMPVILM +GK DVP RS+DC+KAH++AI  A  IA AL+ A  +    T+        Q++D + +   A +SP         D+ S SP    +          G  +V G + DG    G GG   K          PVLT++QHLCV++PERAEGRARLA G+AALLP LEE DR RFV FLAK SR ++I HRGF+VELS+RL+   WPWA  ++S+
Sbjct:  250 EVLACLELLKSCLACVPLESHQELVVKLSEVLVGVSVVAAIEGPASLADLASASMVGLVTGA--------------------SGHTEVVQGVVLQALMPVILMTTGKADVPPRSRDCVKAHNSAIDTAKAIAAALRNAATKNGYKTRGGTPSTPGQSTDVLSEGGLASQSPSATTPAGGGDDTSASP----TXXXXXXXXXXGPVVVVGKKGDGDGQTGTGGDGGK----------PVLTLLQHLCVSSPERAEGRARLAEGLAALLPELEEPDRVRFVVFLAKLSRSAKIVHRGFSVELSSRLLTEDWPWATDDSSS 533          
BLAST of mRNA_H-paniculata_contig7599.15591.1 vs. uniprot
Match: A0A6H5JQJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQJ4_9PHAE)

HSP 1 Score: 176 bits (446), Expect = 5.140e-47
Identity = 131/313 (41.85%), Postives = 173/313 (55.27%), Query Frame = 0
Query:    3 EVQECLWVLKACVCSVPFTSHQDLLVKLSEVLVGISVVAAVNGPAALAELASSTILALVRSGLSCAGXXXXXXXXXFXXXXCSGNGSA-EAAVLQALMPVILMASGKGDVPSRSKDCLKAHDNAIRVATDIATALKRARQQQQELTKES--QTSDQIHDEAEKSPLRADEDRDENSTSPP-----RDDSIPSLRTQDRGGGE--MVKGNEDDGGAGGKKTKNSLHDPPRFRPVLTMVQHLCVAAPERAEGRARLASGIAALLPVLEEMDRTRFVAFLAKFSRGSRINHRGFAVELSARLVMSTWPWAVSNNSN 305
            EV  CL +LK+C+  V   SHQDL+VKLSEVLVG+SVVAA+ GPA+LA+LAS++++ LV                       SG+    +  VLQALMPVILM +GK DVP RS+DC+KAH++A+  A  IA AL+ A  +    T+ +   T  Q  D   +  L +   +  ++T+P         S          GG   +V G + DG                 +PVLT++QHLCV++PERAEGRARLA G+A LLP LEE DR RFV FLAK              ELS+RL+   WPWA  +NS+
Sbjct:  128 EVLACLELLKSCLACVSLESHQDLVVKLSEVLVGVSVVAAIEGPASLADLASASMVGLVTGA--------------------SGHTEVVQGVVLQALMPVILMNTGKADVPPRSRDCVKAHNSAVDTAKAIAAALRNAATKNGYETRGATPSTPGQSTDVPSEGDLAS---QSPSATTPAGGGYDTSSSPXXXXXXXXXGGAPVVVVGKKGDG------XXXXXXXXXXXKPVLTLLQHLCVSSPERAEGRARLAEGLAGLLPELEEHDRARFVVFLAK--------------ELSSRLLTEDWPWATDDNSS 397          
BLAST of mRNA_H-paniculata_contig7599.15591.1 vs. uniprot
Match: A0A4D9DCZ0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DCZ0_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.110e-10
Identity = 72/302 (23.84%), Postives = 136/302 (45.03%), Query Frame = 0
Query:   22 SHQDLLVKLSEVLVGISVVAAVNGPAALAELASSTILALVRSGLSCAGXXXXXXXXXFXXXXCSGNGSAEAAVLQALMPVILMASGKGDVPSRSKDCLKAHDNAIRVATDIATALKRARQQQQELTKESQTSDQIHDEAEKSPLRADEDRDENSTSPPRDDSIPSLRTQDRGGGEMVKGNEDDGG--------------------AGGKKTKNSLHDPPR--FRPVLTMVQHLCVAAPERAEGRARLASGIAALLPVLEEMDRT---RFVAFLAKFSRGSRINHRGFAVELSARLVMSTWPW 298
            +H DL  +L+E+++G+  +A  +   ALA+ A   ++AL+                       +G       VL+AL+P++ M +G+  +PS ++    AH  A+ V   + T +++  +Q++   ++   ++   + A +                P  +     R++  G G++ KG+ +D                      AG  K+K      P      VL +++H+C  AP+RA+ RARL   + +LL  L+ +      RF+ FLA+  R +++ +R F VE++A  V +TW W
Sbjct:  266 THDDLQGELTELVLGVYSLAPAS--TALAQAARRVLMALIMV---------------------AGGPGGNPIVLRALLPLLTMKAGRNGLPSDARARTSAHQKAVAV---LRTLIEKGEEQKRAHVRKCGVTEDNEEVATRXXXXXXXXXXXXXKLGPGKEKG-KRRSKKGGRGDLAKGDGEDANSAEGTQATQEIAESSDAAVDAGRGKSKGKRRTVPADLHTTVLAVLEHMCADAPDRADVRARLVDSVLSLLEALQRVAPELGPRFIVFLARLLRSTKVANRAFGVEIAASFVNATWAW 540          
BLAST of mRNA_H-paniculata_contig7599.15591.1 vs. uniprot
Match: UPI001B88D579 (condensin-2 complex subunit D3-like n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88D579)

HSP 1 Score: 58.5 bits (140), Expect = 8.110e-6
Identity = 26/68 (38.24%), Postives = 45/68 (66.18%), Query Frame = 0
Query:  225 VLTMVQHLCVAAPERAEGRARLASGIAALLPVLEEMDRTRFVAFLAKFSRGSRINHRGFAVELSARLV 292
            V T++QH+C   P+RAE R ++A G+  LL +L +    R + ++ K S  S+IN+RGFA+++  +L+
Sbjct:  357 VRTLIQHVCTKVPDRAEYRTKVAEGVVPLLCILPDEAYARMMEWIVKLSTHSKINNRGFALDIVTQLL 424          
BLAST of mRNA_H-paniculata_contig7599.15591.1 vs. uniprot
Match: W7TNH2_9STRA (Condensin-2 complex subunit d3 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TNH2_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.860e-5
Identity = 27/70 (38.57%), Postives = 43/70 (61.43%), Query Frame = 0
Query:  232 LCVAAPERAEGRARLASGIAALLPVLEEMDRT---RFVAFLAKFSRGSRINHRGFAVELSARLVMSTWPW 298
            +C  AP+RA+ RARL   + +LL  L+ +      RF+ FLA+  R +++ +R F VE++A  V +TW W
Sbjct:    1 MCADAPDRADVRARLVDSVLSLLEALQRVAPALGPRFIVFLARLLRSTKVANRAFGVEIAASFVNATWAW 70          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7599.15591.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FP86_ECTSI3.340e-5745.60Cnd1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JQJ4_9PHAE5.140e-4741.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A4D9DCZ0_9STRA1.110e-1023.84Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
UPI001B88D5798.110e-638.24condensin-2 complex subunit D3-like n=1 Tax=Gigant... [more]
W7TNH2_9STRA1.860e-538.57Condensin-2 complex subunit d3 n=1 Tax=Nannochloro... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 129..149
NoneNo IPR availablePANTHERPTHR14222:SF1CONDENSIN-2 COMPLEX SUBUNIT D3coord: 89..299
IPR026971Condensin subunit 1/Condensin-2 complex subunit D3PANTHERPTHR14222CONDENSINcoord: 89..299

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7599contigH-paniculata_contig7599:5712..9461 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7599.15591.1mRNA_H-paniculata_contig7599.15591.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig7599 5712..9461 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig7599.15591.1 ID=prot_H-paniculata_contig7599.15591.1|Name=mRNA_H-paniculata_contig7599.15591.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=307bp
VDEVQECLWVLKACVCSVPFTSHQDLLVKLSEVLVGISVVAAVNGPAALA
ELASSTILALVRSGLSCAGGGGGGGGGSFSGGGCSGNGSAEAAVLQALMP
VILMASGKGDVPSRSKDCLKAHDNAIRVATDIATALKRARQQQQELTKES
QTSDQIHDEAEKSPLRADEDRDENSTSPPRDDSIPSLRTQDRGGGEMVKG
NEDDGGAGGKKTKNSLHDPPRFRPVLTMVQHLCVAAPERAEGRARLASGI
AALLPVLEEMDRTRFVAFLAKFSRGSRINHRGFAVELSARLVMSTWPWAV
SNNSNGR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR026971CND1/NCAPD3