prot_H-paniculata_contig75828.15570.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig75828.15570.1
Unique Nameprot_H-paniculata_contig75828.15570.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length200
Homology
BLAST of mRNA_H-paniculata_contig75828.15570.1 vs. uniprot
Match: D1J746_ECTSI (30S ribosomal protein S3, chloroplastic n=3 Tax=Ectocarpales TaxID=2877 RepID=D1J746_ECTSI)

HSP 1 Score: 385 bits (988), Expect = 1.180e-134
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0
Query:    1 LGIVQEDKSLWYSGSNSYVSFLKEDYQIREYIYQFLLLNKVGYSGITKLIIKRDETKKRIYIEIQSVVPGRIVGKSGAFLRKLDEELSVLLKNKKVLINIVEITKPYTEATILVDLLVKKLEERVSFRMCIREILKRYRTEDELKGIKIQIAGRLNGAEIARTEWVREGRVPLQTLRANIDYSYKTAQTTYGILGIKIWL 200
            LGIVQEDKSLWYSGSNSYVSFLKEDYQIREYIYQFLLLNKVGYSGITKLIIKRDETKKRIYIEIQSVVPGRIVGKSGAFLRKLDEELSVLLKNKKVLINIVEITKPYTEATILVDLLVKKLEERVSFRMCIREILKRYRTEDELKGIKIQIAGRLNGAEIARTEWVREGRVPLQTLRANIDYSYKTAQTTYGILGIKIWL
Sbjct:   12 LGIVQEDKSLWYSGSNSYVSFLKEDYQIREYIYQFLLLNKVGYSGITKLIIKRDETKKRIYIEIQSVVPGRIVGKSGAFLRKLDEELSVLLKNKKVLINIVEITKPYTEATILVDLLVKKLEERVSFRMCIREILKRYRTEDELKGIKIQIAGRLNGAEIARTEWVREGRVPLQTLRANIDYSYKTAQTTYGILGIKIWL 211          
BLAST of mRNA_H-paniculata_contig75828.15570.1 vs. uniprot
Match: A0A0S0FBE5_COSCS (30S ribosomal protein S3, chloroplastic n=33 Tax=Phaeophyceae TaxID=2870 RepID=A0A0S0FBE5_COSCS)

HSP 1 Score: 352 bits (902), Expect = 1.500e-121
Identity = 178/200 (89.00%), Postives = 191/200 (95.50%), Query Frame = 0
Query:    1 LGIVQEDKSLWYSGSNSYVSFLKEDYQIREYIYQFLLLNKVGYSGITKLIIKRDETKKRIYIEIQSVVPGRIVGKSGAFLRKLDEELSVLLKNKKVLINIVEITKPYTEATILVDLLVKKLEERVSFRMCIREILKRYRTEDELKGIKIQIAGRLNGAEIARTEWVREGRVPLQTLRANIDYSYKTAQTTYGILGIKIWL 200
            LGI+QED+SLWYSG+NSY+SFLKEDY IREYI QFL+ N VGYSGITKLIIKR+ETKKR+YIEIQSVVPGRIVGKSG+ LR LD+ELS LLKNKKVLINIVEITKPYTEA+ILVD+LVKKLEERVSFR CIREIL+RYRTEDELKGIK+QIAGRLNGAEIARTEWVREGRVPLQTLRANIDYSYK AQTTYGILGIKIWL
Sbjct:   12 LGIIQEDRSLWYSGTNSYISFLKEDYTIREYISQFLISNNVGYSGITKLIIKRNETKKRVYIEIQSVVPGRIVGKSGSLLRTLDQELSALLKNKKVLINIVEITKPYTEASILVDVLVKKLEERVSFRKCIREILRRYRTEDELKGIKVQIAGRLNGAEIARTEWVREGRVPLQTLRANIDYSYKVAQTTYGILGIKIWL 211          
BLAST of mRNA_H-paniculata_contig75828.15570.1 vs. uniprot
Match: A0A1I9LVT7_9PHAE (30S ribosomal protein S3, chloroplastic n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVT7_9PHAE)

HSP 1 Score: 338 bits (866), Expect = 4.580e-116
Identity = 172/200 (86.00%), Postives = 185/200 (92.50%), Query Frame = 0
Query:    1 LGIVQEDKSLWYSGSNSYVSFLKEDYQIREYIYQFLLLNKVGYSGITKLIIKRDETKKRIYIEIQSVVPGRIVGKSGAFLRKLDEELSVLLKNKKVLINIVEITKPYTEATILVDLLVKKLEERVSFRMCIREILKRYRTEDELKGIKIQIAGRLNGAEIARTEWVREGRVPLQTLRANIDYSYKTAQTTYGILGIKIWL 200
            LGIV+ED+SLWYS +NSY SFLKEDY++REYI +F LLNKV YSGIT LIIKRDE KKRIYIEIQSVVPGRIVGKSGAFLRKLDEELS+LLKNKKVLINIVEI  PYTEA+ILVD+ +KKL ER+SFRMCIR IL RYR  +ELKGIK+QIAGRLNGAEIARTEWVREGRVPLQTLRANIDYSYKTAQTTYGILGIKIWL
Sbjct:   12 LGIVEEDRSLWYSKTNSYPSFLKEDYKVREYISEFFLLNKVSYSGITNLIIKRDERKKRIYIEIQSVVPGRIVGKSGAFLRKLDEELSILLKNKKVLINIVEIKNPYTEASILVDVFMKKLRERISFRMCIRAILTRYRMHNELKGIKVQIAGRLNGAEIARTEWVREGRVPLQTLRANIDYSYKTAQTTYGILGIKIWL 211          
BLAST of mRNA_H-paniculata_contig75828.15570.1 vs. uniprot
Match: A0A8F0FAX9_9PHAE (Ribosomal protein S3 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAX9_9PHAE)

HSP 1 Score: 334 bits (857), Expect = 1.080e-114
Identity = 168/200 (84.00%), Postives = 189/200 (94.50%), Query Frame = 0
Query:    1 LGIVQEDKSLWYSGSNSYVSFLKEDYQIREYIYQFLLLNKVGYSGITKLIIKRDETKKRIYIEIQSVVPGRIVGKSGAFLRKLDEELSVLLKNKKVLINIVEITKPYTEATILVDLLVKKLEERVSFRMCIREILKRYRTEDELKGIKIQIAGRLNGAEIARTEWVREGRVPLQTLRANIDYSYKTAQTTYGILGIKIWL 200
            LGIVQ+D+SLWYSG++SY++FLKEDY+IREYIYQFL  + V YSGITK+IIKRDETKK+IYIE+QSVVPGRIVGKSG+ LR LD+ LS+LLKNKKVLINIVEI +PY EATILVD+LV+KLEER+SFR CIREIL+RYRTE ELKGIK+QIAGRLNGAEIARTEWVREGRVPLQTLRA+IDYSYKTAQTTYGILGIKIWL
Sbjct:   12 LGIVQDDRSLWYSGTSSYITFLKEDYKIREYIYQFLNSSNVDYSGITKIIIKRDETKKKIYIELQSVVPGRIVGKSGSILRVLDQNLSLLLKNKKVLINIVEIKQPYKEATILVDILVRKLEERISFRKCIREILQRYRTEGELKGIKVQIAGRLNGAEIARTEWVREGRVPLQTLRADIDYSYKTAQTTYGILGIKIWL 211          
BLAST of mRNA_H-paniculata_contig75828.15570.1 vs. uniprot
Match: A0A141BSN5_9PHAE (30S ribosomal protein S3, chloroplastic n=13 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSN5_9PHAE)

HSP 1 Score: 317 bits (813), Expect = 5.410e-108
Identity = 156/200 (78.00%), Postives = 184/200 (92.00%), Query Frame = 0
Query:    1 LGIVQEDKSLWYSGSNSYVSFLKEDYQIREYIYQFLLLNKVGYSGITKLIIKRDETKKRIYIEIQSVVPGRIVGKSGAFLRKLDEELSVLLKNKKVLINIVEITKPYTEATILVDLLVKKLEERVSFRMCIREILKRYRTEDELKGIKIQIAGRLNGAEIARTEWVREGRVPLQTLRANIDYSYKTAQTTYGILGIKIWL 200
            LG +Q+D+SLWYSG N+Y+SFLK DYQIREYIY FL LNKVGYSGITK+II+ D  KK++Y+EIQSVVPGRI+GKSG+ L+KLDE+L +L+ ++KVLINIVEI +PY EA+ILVD+LVKKLEERV++R C+REIL+RYRTE+ LKGIKIQIAGRLNGAEIAR EWVREGRVPLQTLRA+IDYSYKTAQTTYGILGIK+WL
Sbjct:   12 LGGLQDDRSLWYSGVNTYISFLKNDYQIREYIYSFLSLNKVGYSGITKIIIRNDGIKKKVYVEIQSVVPGRIIGKSGSLLKKLDEKLQLLILDRKVLINIVEIEQPYQEASILVDILVKKLEERVAYRKCVREILQRYRTEEGLKGIKIQIAGRLNGAEIARIEWVREGRVPLQTLRADIDYSYKTAQTTYGILGIKLWL 211          
BLAST of mRNA_H-paniculata_contig75828.15570.1 vs. uniprot
Match: D1GJS6_FUCVE (30S ribosomal protein S3, chloroplastic n=3 Tax=Fucaceae TaxID=3010 RepID=D1GJS6_FUCVE)

HSP 1 Score: 311 bits (798), Expect = 1.040e-105
Identity = 154/200 (77.00%), Postives = 182/200 (91.00%), Query Frame = 0
Query:    1 LGIVQEDKSLWYSGSNSYVSFLKEDYQIREYIYQFLLLNKVGYSGITKLIIKRDETKKRIYIEIQSVVPGRIVGKSGAFLRKLDEELSVLLKNKKVLINIVEITKPYTEATILVDLLVKKLEERVSFRMCIREILKRYRTEDELKGIKIQIAGRLNGAEIARTEWVREGRVPLQTLRANIDYSYKTAQTTYGILGIKIWL 200
            LG +Q D+SLWYS +NSY+  LK+DY IREYI  FL LN+VGYSGITK+IIK DET+K+IY+EIQSVVPGRI+GKSG  L++LDE+L  L+K+KKVLINI+E+ +PY EA+ILVD+LVKKLEERV++R C+REIL+RYRTE+ LKGIKIQIAGRLNGAEIARTEWVREGRVPLQTLRA+IDYSYKTAQTTYGILGIK+WL
Sbjct:   12 LGGLQTDRSLWYSKTNSYIYLLKDDYAIREYIRTFLFLNQVGYSGITKIIIKSDETRKKIYVEIQSVVPGRIIGKSGLLLKELDEKLQSLIKDKKVLINIIEVEQPYQEASILVDILVKKLEERVAYRKCVREILQRYRTEEGLKGIKIQIAGRLNGAEIARTEWVREGRVPLQTLRADIDYSYKTAQTTYGILGIKLWL 211          
BLAST of mRNA_H-paniculata_contig75828.15570.1 vs. uniprot
Match: A0A8F0JYH0_9PHAE (Ribosomal protein S3 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0JYH0_9PHAE)

HSP 1 Score: 284 bits (726), Expect = 9.790e-95
Identity = 147/201 (73.13%), Postives = 171/201 (85.07%), Query Frame = 0
Query:    1 LGIVQEDKSLWYSG-SNSYVSFLKEDYQIREYIYQFLLLNKVGYSGITKLIIKRDETKKRIYIEIQSVVPGRIVGKSGAFLRKLDEELSVLLKNKKVLINIVEITKPYTEATILVDLLVKKLEERVSFRMCIREILKRYRTEDELKGIKIQIAGRLNGAEIARTEWVREGRVPLQTLRANIDYSYKTAQTTYGILGIKIWL 200
            LGIVQ+D+SLWYS  ++SY++FLK+DY IRE I Q L  N + +SGITK+II+R E KK++YIEIQS VP RIVG SG+ +R LD+ LS LLK +KVL+NIVEI +PY EA ILVD+LVKKLEER SFR CIR IL+RYRT +E+ GIKIQIAGRLNGAEIARTEWVREGRVPLQTLRA+IDY YKTAQT YGILGIKIWL
Sbjct:   12 LGIVQQDRSLWYSNRASSYINFLKQDYAIREVISQTLKSNNLVFSGITKIIIRRPERKKKVYIEIQSAVPSRIVGNSGSTIRNLDKRLSTLLKPEKVLLNIVEIEEPYAEAVILVDILVKKLEERTSFRRCIRAILQRYRTVNEINGIKIQIAGRLNGAEIARTEWVREGRVPLQTLRADIDYCYKTAQTIYGILGIKIWL 212          
BLAST of mRNA_H-paniculata_contig75828.15570.1 vs. uniprot
Match: A0A2I4Q2H9_9PHAE (30S ribosomal protein S3, chloroplastic n=2 Tax=Eukaryota TaxID=2759 RepID=A0A2I4Q2H9_9PHAE)

HSP 1 Score: 273 bits (697), Expect = 2.440e-90
Identity = 136/200 (68.00%), Postives = 170/200 (85.00%), Query Frame = 0
Query:    1 LGIVQEDKSLWYSGSNSYVSFLKEDYQIREYIYQFLLLNKVGYSGITKLIIKRDETKKRIYIEIQSVVPGRIVGKSGAFLRKLDEELSVLLKNKKVLINIVEITKPYTEATILVDLLVKKLEERVSFRMCIREILKRYRTEDELKGIKIQIAGRLNGAEIARTEWVREGRVPLQTLRANIDYSYKTAQTTYGILGIKIWL 200
            LGI+  D+S WYS  NSY   LKEDY+IR+ I++ +L N    SG+T +IIKR E KK+IYIEI+SV P +IVG+SG+ LRKLD+++S L++ K +LINI++ITKPYTEAT+LVD+L+  L++R+SFR CIR+IL+RYR E+EL GIKIQIAGRLNGAEIARTEWVREGRVPLQTLRA+IDY YKTAQT+YGILGIKIW+
Sbjct:   12 LGILNPDQSFWYSSPNSYTLNLKEDYEIRKLIFKLILTNNSTSSGVTNIIIKRSERKKKIYIEIKSVAPEQIVGESGSRLRKLDKKISSLVEPKTILINIIKITKPYTEATLLVDVLIFNLQKRISFRKCIRKILERYRIENELNGIKIQIAGRLNGAEIARTEWVREGRVPLQTLRADIDYCYKTAQTSYGILGIKIWI 211          
BLAST of mRNA_H-paniculata_contig75828.15570.1 vs. uniprot
Match: A0A8E5XRJ9_9PHAE (30S ribosomal protein S3, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRJ9_9PHAE)

HSP 1 Score: 248 bits (634), Expect = 8.930e-81
Identity = 126/200 (63.00%), Postives = 164/200 (82.00%), Query Frame = 0
Query:    1 LGIVQEDKSLWYSGSNSYVSFLKEDYQIREYIYQFLLLNKVGYSGITKLIIKRDETKKRIYIEIQSVVPGRIVGKSGAFLRKLDEELSVLLKNKKVLINIVEITKPYTEATILVDLLVKKLEERVSFRMCIREILKRYRTEDELKGIKIQIAGRLNGAEIARTEWVREGRVPLQTLRANIDYSYKTAQTTYGILGIKIWL 200
            LGI+QEDKSLWY+ +  Y S +K+DY IR+ I + L + ++  SGITK++I R+E KK IYIEIQ+ +PGRIVGK G  L+ LDE+LS ++ ++++LINIV++  PYTEAT+L  +LVKKLEERVSFR  ++EI++RY T+  LKGIK+QI+GRLNGAEIART+W+REGRVPLQTLRA+IDY   TAQT YGILG+KIWL
Sbjct:   12 LGIIQEDKSLWYNEAKLYASTIKQDYMIRDIISKLLRVKRIISSGITKIVIHRNERKK-IYIEIQTAIPGRIVGKGGGVLKALDEKLSSVIIDQEILINIVQVKDPYTEATLLAAILVKKLEERVSFRKAMKEIVERYETQS-LKGIKVQISGRLNGAEIARTQWIREGRVPLQTLRADIDYCSTTAQTKYGILGVKIWL 209          
BLAST of mRNA_H-paniculata_contig75828.15570.1 vs. uniprot
Match: A0A8E5BDG2_9PHAE (Ribosomal protein S3 n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E5BDG2_9PHAE)

HSP 1 Score: 243 bits (619), Expect = 1.760e-78
Identity = 120/200 (60.00%), Postives = 157/200 (78.50%), Query Frame = 0
Query:    1 LGIVQEDKSLWYSGSNSYVSFLKEDYQIREYIYQFLLLNKVGYSGITKLIIKRDETKKRIYIEIQSVVPGRIVGKSGAFLRKLDEELSVLLKNKKVLINIVEITKPYTEATILVDLLVKKLEERVSFRMCIREILKRYRTEDELKGIKIQIAGRLNGAEIARTEWVREGRVPLQTLRANIDYSYKTAQTTYGILGIKIWL 200
            +GI++ED+SLW S   SY+ FLK DY+IR YI +F +LNK  YSG T+++IKRDE KK++YIEIQ+  P  ++G+SGA L  L+++L++   ++K++IN+VEI   Y EA+ILVDLL + L +RV FR CIR  LKRY+   ++KGIK+QIAGRLNGAE+ARTEWVREGRVPLQTLRA+IDYS K   T  GILG+KIWL
Sbjct:   12 VGILKEDRSLWCSKKKSYIEFLKADYKIRAYIKEFWVLNKSSYSGDTEILIKRDENKKKVYIEIQAAFPKNLIGESGALLETLNKKLNLFFPSEKIMINMVEIENYYAEASILVDLLAQNLIDRVPFRKCIRTTLKRYKNAKKVKGIKVQIAGRLNGAEMARTEWVREGRVPLQTLRADIDYSSKPVHTPSGILGLKIWL 211          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig75828.15570.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D1J746_ECTSI1.180e-134100.0030S ribosomal protein S3, chloroplastic n=3 Tax=Ec... [more]
A0A0S0FBE5_COSCS1.500e-12189.0030S ribosomal protein S3, chloroplastic n=33 Tax=P... [more]
A0A1I9LVT7_9PHAE4.580e-11686.0030S ribosomal protein S3, chloroplastic n=1 Tax=Pl... [more]
A0A8F0FAX9_9PHAE1.080e-11484.00Ribosomal protein S3 n=1 Tax=Desmarestia aculeata ... [more]
A0A141BSN5_9PHAE5.410e-10878.0030S ribosomal protein S3, chloroplastic n=13 Tax=S... [more]
D1GJS6_FUCVE1.040e-10577.0030S ribosomal protein S3, chloroplastic n=3 Tax=Fu... [more]
A0A8F0JYH0_9PHAE9.790e-9573.13Ribosomal protein S3 n=1 Tax=Protohalopteris sp. T... [more]
A0A2I4Q2H9_9PHAE2.440e-9068.0030S ribosomal protein S3, chloroplastic n=2 Tax=Eu... [more]
A0A8E5XRJ9_9PHAE8.930e-8163.0030S ribosomal protein S3, chloroplastic n=1 Tax=Is... [more]
A0A8E5BDG2_9PHAE1.760e-7860.00Ribosomal protein S3 n=1 Tax=Phaeophyceae sp. TaxI... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004087K Homology domainSMARTSM00322kh_6coord: 56..122
e-value: 0.0015
score: 27.8
IPR036419Ribosomal protein S3, C-terminal domain superfamilyGENE3D3.30.1140.32coord: 105..200
e-value: 3.7E-35
score: 122.2
IPR036419Ribosomal protein S3, C-terminal domain superfamilySUPERFAMILY54821Ribosomal protein S3 C-terminal domaincoord: 105..200
IPR004044K Homology domain, type 2PFAMPF07650KH_2coord: 40..106
e-value: 1.2E-7
score: 31.5
IPR004044K Homology domain, type 2PROSITEPS50823KH_TYPE_2coord: 28..104
score: 11.316
IPR005704Ribosomal protein S3, bacterial-typeTIGRFAMTIGR01009TIGR01009coord: 1..200
e-value: 1.3E-59
score: 199.5
IPR005704Ribosomal protein S3, bacterial-typeHAMAPMF_01309_BRibosomal_S3_Bcoord: 1..200
score: 26.212
IPR015946K homology domain-like, alpha/betaGENE3D3.30.300.20coord: 8..104
e-value: 6.7E-16
score: 60.3
IPR001351Ribosomal protein S3, C-terminalPFAMPF00189Ribosomal_S3_Ccoord: 118..200
e-value: 9.4E-31
score: 106.2
NoneNo IPR availablePANTHERPTHR11760:SF1930S RIBOSOMAL PROTEIN S3coord: 1..200
NoneNo IPR availablePANTHERPTHR1176030S/40S RIBOSOMAL PROTEIN S3coord: 1..200
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..30
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 52..200
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 31..51
IPR018280Ribosomal protein S3, conserved sitePROSITEPS00548RIBOSOMAL_S3coord: 161..195
IPR009019K homology domain superfamily, prokaryotic typeSUPERFAMILY54814Prokaryotic type KH domain (KH-domain type II)coord: 1..103

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig75828contigH-paniculata_contig75828:1..600 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig75828.15570.1mRNA_H-paniculata_contig75828.15570.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig75828 1..600 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig75828.15570.1 ID=prot_H-paniculata_contig75828.15570.1|Name=mRNA_H-paniculata_contig75828.15570.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=200bp
LGIVQEDKSLWYSGSNSYVSFLKEDYQIREYIYQFLLLNKVGYSGITKLI
IKRDETKKRIYIEIQSVVPGRIVGKSGAFLRKLDEELSVLLKNKKVLINI
VEITKPYTEATILVDLLVKKLEERVSFRMCIREILKRYRTEDELKGIKIQ
IAGRLNGAEIARTEWVREGRVPLQTLRANIDYSYKTAQTTYGILGIKIWL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004087KH_dom
IPR036419Ribosomal_S3_C_sf
IPR004044KH_dom_type_2
IPR005704Ribosomal_S3_bac-typ
IPR015946KH_dom-like_a/b
IPR001351Ribosomal_S3_C
IPR018280Ribosomal_S3_CS
IPR009019KH_sf_prok-type