prot_H-paniculata_contig7441.15423.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig7441.15423.1
Unique Nameprot_H-paniculata_contig7441.15423.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length69
Homology
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BLAST of mRNA_H-paniculata_contig7441.15423.1 vs. uniprot
Match: D7FTK5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK5_ECTSI)

HSP 1 Score: 50.4 bits (119), Expect = 1.600e-5
Identity = 26/58 (44.83%), Postives = 36/58 (62.07%), Query Frame = 0 
Query:    6 LTCTSDFWVATEMSGEDWGTMWHMAMTLVTVSIMSSWCNAHKIKRLLLFFTHWLRYIV 63
            L+C + F       GED  T   +  TLV+VS++S+WC+  K+KRL LFF HWL  +V
Sbjct:    5 LSCETGFTAIGLQEGEDKITPIRVLSTLVSVSVVSAWCSWTKVKRLSLFFAHWLSGLV 62
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7441.15423.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FTK5_ECTSI1.600e-544.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 46..68
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 26..45
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..25
NoneNo IPR availableTMHMMTMhelixcoord: 23..45

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7441contigH-paniculata_contig7441:3457..6928 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7441.15423.1mRNA_H-paniculata_contig7441.15423.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig7441 2969..7240 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig7441.15423.1 ID=prot_H-paniculata_contig7441.15423.1|Name=mRNA_H-paniculata_contig7441.15423.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=69bp
MTTHELTCTSDFWVATEMSGEDWGTMWHMAMTLVTVSIMSSWCNAHKIKR
LLLFFTHWLRYIVERLTR*
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