prot_H-paniculata_contig741.15390.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig741.15390.1
Unique Nameprot_H-paniculata_contig741.15390.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length572
Homology
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BLAST of mRNA_H-paniculata_contig741.15390.1 vs. uniprot
Match: D8LRK0_ECTSI (Nucleosome/chromatin assembly factor group n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRK0_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 1.160e-10
Identity = 53/137 (38.69%), Postives = 75/137 (54.74%), Query Frame = 0 
Query:  360 SITAKEHRGGAGRGNGSS--------------GGGDAVEARHS-----------LYADMVVEAVRALRESRGSSLSGMATWIRNS-HYGRLLASMDDSTKEFKATVVVGIKQALAQGKLVKNRTLYRVSPAHIQALA 470
            S +A +  GG G GNGS+              GG D+  +R              + DMVVEA+ AL +SRGSS      W+++S  YG + A  D++  +FKA V  G+KQAL +GK+V+ RT YR+SP H +AL+
Sbjct:  128 SSSASDVDGGVGGGNGSTEASSWSGDVMRSARGGCDSDSSRRPGEEQEEQLQPPSFPDMVVEALHALSDSRGSSKLATVKWLKSSSRYGWMAAPPDEA--KFKANVAAGVKQALEEGKVVQVRTNYRISPDHARALS 262
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig741.15390.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LRK0_ECTSI1.160e-1038.69Nucleosome/chromatin assembly factor group n=1 Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005818Linker histone H1/H5, domain H15SMARTSM00526h15plus2coord: 384..458
e-value: 7.2E-4
score: 28.1
IPR005818Linker histone H1/H5, domain H15PFAMPF00538Linker_histonecoord: 387..454
e-value: 1.0E-4
score: 22.6
IPR005818Linker histone H1/H5, domain H15PROSITEPS51504H15coord: 386..463
score: 13.402
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 383..472
e-value: 5.4E-5
score: 25.3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 8..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..20
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..572
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..7
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..24
score: 0.681
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 386..467

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig741contigH-paniculata_contig741:24742..32356 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig741.15390.1mRNA_H-paniculata_contig741.15390.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig741 24740..32356 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig741.15390.1 ID=prot_H-paniculata_contig741.15390.1|Name=mRNA_H-paniculata_contig741.15390.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=572bp
LFSHPRSVWGLLLCLLRCFKGTHHIICTNGYALPYCRDQYQQSTSCGSVS
LGEQGTCWWKRALYIVLIKVNIRIVLSFMEGSTARHKEQQAITLPATTTY
QTAPTVGERVIVVGRDKEGGETYRTATVTTVRVVPSGNNDDSGNGTTLKV
RFTGTAKGMADEVVDARDTIKRNEGSLRLKKEYEARLRREASCTLHIPPL
PPSLAAAADTVWRTNESDQSFSSLPPPSLPLSRSPAALSRAPPATTKNIM
AMLPTPSRAGPDSSPPLVVVGENYGKKRKSWDVKTSLLLGSAINKGIGDS
WSVDPATAAASSDLTRRRGEGGPTTALPIGRKGRDIAGWAKVGMWQVQRA
VPLPSRPSPSITAKEHRGGAGRGNGSSGGGDAVEARHSLYADMVVEAVRA
LRESRGSSLSGMATWIRNSHYGRLLASMDDSTKEFKATVVVGIKQALAQG
KLVKNRTLYRVSPAHIQALARAEDTTKSSGELIDRRDSSHFVESEPAAAP
VRTPEKLRLGDVHTKENPIIKNAAMAADDRGTRIEAIDGSGRRGGLGGGR
SGGGILGRGSRSGGRERRGGRG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005818Histone_H1/H5_H15
IPR036388WH-like_DNA-bd_sf
IPR036390WH_DNA-bd_sf