prot_H-paniculata_contig7350.15323.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig7350.15323.1
Unique Nameprot_H-paniculata_contig7350.15323.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length203
Homology
BLAST of mRNA_H-paniculata_contig7350.15323.1 vs. uniprot
Match: A0A6H5KAK0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAK0_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 3.720e-35
Identity = 77/213 (36.15%), Postives = 124/213 (58.22%), Query Frame = 0
Query:    5 VDKVRSTLMAKFTMTDFGETMKILGINTQHK-ERGTISIRQHHHVVSLLTKFSMDDCNP------GGSV--------LLDEQGTRDYRAIVGSLIFLTQSTRMDIPFAVSQAARFMANLTSIHMKSEKRILLYLKGAPNLKITYSRDSIFELTGFCDASHGTGDREKARSTSGSIYFLSGGVVQFSSSLQNLTAQSTTEGELIAMSTCAEQGI 202
            VD+ +  L  +F MTD GE  +ILGI+ Q   E+GT++I Q H+V +LL +F M + NP      G  +        +L     ++Y+++ GS+++L Q TR D+ +A  Q ++  +N   ++M + K +L YL+G P L I Y R   F L  F D+S G  + +  RST+G ++FL+GG++ + +  Q LTAQST E E+ A+S  A + +
Sbjct:   70 VDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKNYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQ-FRLAAFTDSSFGA-NPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVETEIQALSYLAREAV 280          
BLAST of mRNA_H-paniculata_contig7350.15323.1 vs. uniprot
Match: A0A6H5KUJ3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUJ3_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 9.750e-35
Identity = 77/213 (36.15%), Postives = 123/213 (57.75%), Query Frame = 0
Query:    5 VDKVRSTLMAKFTMTDFGETMKILGINTQHK-ERGTISIRQHHHVVSLLTKFSMDDCNP------GGSV--------LLDEQGTRDYRAIVGSLIFLTQSTRMDIPFAVSQAARFMANLTSIHMKSEKRILLYLKGAPNLKITYSRDSIFELTGFCDASHGTGDREKARSTSGSIYFLSGGVVQFSSSLQNLTAQSTTEGELIAMSTCAEQGI 202
            VD+ +  L  +F MTD GE  +ILGI  Q   E+GT++I Q H+V +LL +F M + NP      G  +        +L     ++Y+++ GS+++L Q TR D+ +A  Q ++  +N   ++M + K +L YL+G P L I Y R   F L  F D+S G  + +  RST+G ++FL+GG++ + +  Q LTAQST E E+ A+S  A + +
Sbjct:   70 VDQKKKELTDRFEMTDMGEVKRILGIGVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTEKKNYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPGLPIVYKRGQ-FRLAAFTDSSFGA-NPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAV 280          
BLAST of mRNA_H-paniculata_contig7350.15323.1 vs. uniprot
Match: A0A6H5J897_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J897_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 5.070e-33
Identity = 81/213 (38.03%), Postives = 124/213 (58.22%), Query Frame = 0
Query:    5 VDKVRSTLMAKFTMTDFGETMKILGINTQHKERGTISIRQHHHVVSLLTKFSMDDCNPGGS--------------VLLDEQGTRDYRAIVGSLIFLTQSTRMDIPFAVSQAARFMANLTSIHMKSEKRILLYLKGAPNLKITYSRDSIFELTGFCDASH-GTGDREKARSTSGSIYFLSGGVVQFSSSLQNLTAQSTTEGELIAMSTCAEQGI 202
            V  ++  L  KF MTD G    +LG+     + G I + QH +V+++L K+ M DC P  +              + L E+  + Y+ IVGSL+FLT +TR +I +AV    R M   T+ HM   KR+L YL+G P++ + + R   ++L  +CDAS  G+ +R + RS++G I+ L+GGVV  +S+LQ LTAQS+   E+IAM+T A + I
Sbjct:  401 VQDLKKQLSDKFKMTDGGPAELLLGMEISQSD-GEIIVSQHKYVMNILDKYQMVDCKPAATPGSGPEIEQEPENAIYLSEEDKKLYQGIVGSLLFLTNTTRWEIGYAVMVLCRGMNKPTNQHMVGAKRVLRYLRGCPDMPLKFRRGQ-WDLKCYCDASFAGSSERLQKRSSTGYIFILAGGVVSAASTLQKLTAQSSVHAEIIAMATAAREAI 611          
BLAST of mRNA_H-paniculata_contig7350.15323.1 vs. uniprot
Match: A0A6H5KDK0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDK0_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 1.210e-32
Identity = 75/199 (37.69%), Postives = 119/199 (59.80%), Query Frame = 0
Query:    5 VDKVRSTLMAKFTMTDFGETMKILGINTQHK-ERGTISIRQHHHVVSLLTKFSMDDCNPGGSVLLDEQGTRDYRAIVGSLIFLTQSTRMDIPFAVSQAARFMANLTSIHMKSEKRILLYLKGAPNLKITYSRDSIFELTGFCDASHGTGDREKARSTSGSIYFLSGGVVQFSSSLQNLTAQSTTEGELIAMSTCAEQGI 202
            VD+ +  L  +F MTD GE  +ILGI+ Q   E+GT++I Q H+V +LL +F M + NP    +L     + Y+++ GS++ L Q TR D+ +A  Q ++  +N   ++M + K  + YL+G P L I Y R   F L  F D+S G  + +  RST+G ++FL+GG++ + +  Q LTAQST E E+ A+S  A + +
Sbjct:  172 VDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANP--DQILGPTDKKIYQSMTGSILNLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHDVRYLRGNPVLPIVYKRGQ-FRLAAFTDSSFGA-NPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAV 366          
BLAST of mRNA_H-paniculata_contig7350.15323.1 vs. uniprot
Match: A0A6H5JF89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF89_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 1.280e-32
Identity = 77/213 (36.15%), Postives = 123/213 (57.75%), Query Frame = 0
Query:    5 VDKVRSTLMAKFTMTDFGETMKILGINTQHK-ERGTISIRQHHHVVSLLTKFSMDDCNP------GGSV--------LLDEQGTRDYRAIVGSLIFLTQSTRMDIPFAVSQAARFMANLTSIHMKSEKRILLYLKGAPNLKITYSRDSIFELTGFCDASHGTGDREKARSTSGSIYFLSGGVVQFSSSLQNLTAQSTTEGELIAMSTCAEQGI 202
            VD+ +  L  +F MTD GE  +ILGI+ Q   E+GT++I Q H+V +LL +F M + NP      G  +        +L     + Y+++ GS+++L Q TR D+ +A  Q ++  +N   ++M + K +L YL+G P L I Y R   F L  F D+S G  + +  RST+G ++FL+GG++ + +  Q LTAQST E E+ A+S  A + +
Sbjct:  397 VDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMAGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQ-FRLAAFTDSSFGA-NPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAV 607          
BLAST of mRNA_H-paniculata_contig7350.15323.1 vs. uniprot
Match: A0A6H5KE92_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE92_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 1.570e-32
Identity = 77/213 (36.15%), Postives = 123/213 (57.75%), Query Frame = 0
Query:    5 VDKVRSTLMAKFTMTDFGETMKILGINTQHK-ERGTISIRQHHHVVSLLTKFSMDDCNP------GGSV--------LLDEQGTRDYRAIVGSLIFLTQSTRMDIPFAVSQAARFMANLTSIHMKSEKRILLYLKGAPNLKITYSRDSIFELTGFCDASHGTGDREKARSTSGSIYFLSGGVVQFSSSLQNLTAQSTTEGELIAMSTCAEQGI 202
            VD+ +  L  +F MTD GE  +ILGI+ Q   E+GT++I Q H+V +LL +F M + NP      G  +        +L     + Y+++ GS+++L Q TR D+ +A  Q ++  +N   ++M + K +L YL+G P L I Y R   F L  F D+S G  + +  RST+G ++FL+GG++ + +  Q LTAQST E E+ A+S  A + +
Sbjct:  553 VDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQ-FRLAAFTDSSFGA-NPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAV 763          
BLAST of mRNA_H-paniculata_contig7350.15323.1 vs. uniprot
Match: A0A6H5KQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQD0_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 6.060e-32
Identity = 74/213 (34.74%), Postives = 122/213 (57.28%), Query Frame = 0
Query:    5 VDKVRSTLMAKFTMTDFGETMKILGINTQHK-ERGTISIRQHHHVVSLLTKFSMDDCNPGGSV--------------LLDEQGTRDYRAIVGSLIFLTQSTRMDIPFAVSQAARFMANLTSIHMKSEKRILLYLKGAPNLKITYSRDSIFELTGFCDASHGTGDREKARSTSGSIYFLSGGVVQFSSSLQNLTAQSTTEGELIAMSTCAEQGI 202
            VD+ +  L  +F MTD GE  +ILGI+ Q   E+GT++I Q H+V + L +F M + NP  ++              +L     + Y+++ GS+++L Q T+ D+ +A  Q ++  +N   ++M + K +L YL+G P L I Y R   F L  F D+S G  + +  RST+G ++FL+GG++ + +  Q LTAQST E E+ A+S  A + +
Sbjct:  189 VDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTRLERFGMQEANPVSTLGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTQFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQ-FRLAAFTDSSFGA-NPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAV 399          
BLAST of mRNA_H-paniculata_contig7350.15323.1 vs. uniprot
Match: A0A6H5JPQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPQ2_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 7.690e-31
Identity = 71/200 (35.50%), Postives = 114/200 (57.00%), Query Frame = 0
Query:   18 MTDFGETMKILGINTQHK-ERGTISIRQHHHVVSLLTKFSMDDCNP------GGSV--------LLDEQGTRDYRAIVGSLIFLTQSTRMDIPFAVSQAARFMANLTSIHMKSEKRILLYLKGAPNLKITYSRDSIFELTGFCDASHGTGDREKARSTSGSIYFLSGGVVQFSSSLQNLTAQSTTEGELIAMSTCAEQGI 202
            MTD GE  +ILGI+ Q   ++GT+ I Q H+V +LL +F M + NP      G  +        +L     + Y+++ GS+++L Q TR D+ +A  Q ++  +N   ++M + K +L YL+G P L I Y R   F L  F D+S G  + +  RST+G ++FL+ G++ + +  Q LTAQST E E+ A+S  A + +
Sbjct:    1 MTDIGEVKRILGIDVQRDYKQGTLVISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQ-FRLAAFTDSSFGA-NPDNGRSTTGYLFFLARGLISYGAKTQTLTAQSTVEAEIQALSYSAREAV 198          
BLAST of mRNA_H-paniculata_contig7350.15323.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 1.240e-30
Identity = 76/217 (35.02%), Postives = 122/217 (56.22%), Query Frame = 0
Query:    5 VDKVRSTLMAKFTMTDFGETMKILGINTQHK-ERGTISIRQHHHVVSLLTKFSMDDCNP------GGSV--------LLDEQGTRDYRAIVGSLIFLTQSTRMDIPFAVSQAARFMANLTSIHMKSEKRILLYLKGAPNLKITYSRDSI------FELTGFCDASHGTGDREKARSTSGSIYFLSGGVVQFSSSLQNLTAQSTTEGELIAMSTCAEQ 200
            VD+ +  L  +F MTD GE  +ILGI+     E+GT++I Q H+V +LL +F M + NP      G  +        +L     + Y+++ GS+++L Q TR D+ +A  Q ++  +N   ++M + K +L YL+G P L I Y R+ I        L  F D+S G  + +  RST+G ++FL+GG++ + +  Q LTAQST E E+ A+S  A +
Sbjct:  776 VDQKKKELTDRFEMTDMGEVKRILGIDVPRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKREQIRLAAEQIRLAAFTDSSFGA-NPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSARE 991          
BLAST of mRNA_H-paniculata_contig7350.15323.1 vs. uniprot
Match: A0A6H5K4S5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4S5_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 3.130e-30
Identity = 77/230 (33.48%), Postives = 123/230 (53.48%), Query Frame = 0
Query:    5 VDKVRSTLMAKFTMTDFGETMKILGINTQHK-ERGTISIRQHHHVVSLLTKFSMDDCNP------GGSV--------LLDEQGTRDYRAIVGSLIFLTQSTRMDIPFAVSQAARFMANLTSIHMKSEKRILLYLKGAPN-----------------LKITYSRDSIFELTGFCDASHGTGDREKARSTSGSIYFLSGGVVQFSSSLQNLTAQSTTEGELIAMSTCAEQGI 202
            VD+ +  L  +F MTD GE  +ILGI+ Q   E+GT++I Q H+V +LL +F M + NP      G  +        +L     + Y+++ GS+++L Q TR D+ +A  Q ++  +N   ++M + K +L YL+G P                  L I Y R   F L  F D+S G  + +  RST+G ++FL+GG++ + +  Q LTAQST E E+ A+S  A + +
Sbjct:   12 VDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVXXXXXXXXXXXXXXXSVLPIVYKRGQ-FRLAAFTDSSFGA-NPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAV 239          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7350.15323.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KAK0_9PHAE3.720e-3536.15Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KUJ3_9PHAE9.750e-3536.15Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5J897_9PHAE5.070e-3338.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDK0_9PHAE1.210e-3237.69Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JF89_9PHAE1.280e-3236.15Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KE92_9PHAE1.570e-3236.15Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQD0_9PHAE6.060e-3234.74Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JPQ2_9PHAE7.690e-3135.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJR8_9PHAE1.240e-3035.02Integrase catalytic domain-containing protein n=11... [more]
A0A6H5K4S5_9PHAE3.130e-3033.48Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 2..62
e-value: 2.0E-7
score: 30.9
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 75..199
NoneNo IPR availablePANTHERPTHR11439:SF275coord: 75..199

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7350contigH-paniculata_contig7350:4866..5474 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7350.15323.1mRNA_H-paniculata_contig7350.15323.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig7350 4866..5474 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig7350.15323.1 ID=prot_H-paniculata_contig7350.15323.1|Name=mRNA_H-paniculata_contig7350.15323.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=203bp
NNTAVDKVRSTLMAKFTMTDFGETMKILGINTQHKERGTISIRQHHHVVS
LLTKFSMDDCNPGGSVLLDEQGTRDYRAIVGSLIFLTQSTRMDIPFAVSQ
AARFMANLTSIHMKSEKRILLYLKGAPNLKITYSRDSIFELTGFCDASHG
TGDREKARSTSGSIYFLSGGVVQFSSSLQNLTAQSTTEGELIAMSTCAEQ
GI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like