prot_H-paniculata_contig73407.15312.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig73407.15312.1
Unique Nameprot_H-paniculata_contig73407.15312.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length44
Homology
BLAST of mRNA_H-paniculata_contig73407.15312.1 vs. uniprot
Match: A0A0S0GJY0_COSCS (Cytochrome b559 subunit beta n=68 Tax=Stramenopiles TaxID=33634 RepID=A0A0S0GJY0_COSCS)

HSP 1 Score: 89.7 bits (221), Expect = 5.960e-23
Identity = 40/43 (93.02%), Postives = 42/43 (97.67%), Query Frame = 0
Query:    1 MTRNTNQPVAYPIFTFRWLALHGLAVPAIFFLGAITSMQFIQR 43
            MTRNTNQPVAYPIFTFRWLA+HGLAVP IFF+GAITSMQFIQR
Sbjct:    1 MTRNTNQPVAYPIFTFRWLAIHGLAVPTIFFIGAITSMQFIQR 43          
BLAST of mRNA_H-paniculata_contig73407.15312.1 vs. uniprot
Match: A0A3R5UAF7_9STRA (Cytochrome b559 subunit beta n=2 Tax=Eustigmatales TaxID=425074 RepID=A0A3R5UAF7_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 3.350e-20
Identity = 37/43 (86.05%), Postives = 39/43 (90.70%), Query Frame = 0
Query:    1 MTRNTNQPVAYPIFTFRWLALHGLAVPAIFFLGAITSMQFIQR 43
            M R+TNQPV YPIFTFRWLA+HGLAVP IFFLG ITSMQFIQR
Sbjct:    1 MIRSTNQPVVYPIFTFRWLAVHGLAVPTIFFLGGITSMQFIQR 43          
BLAST of mRNA_H-paniculata_contig73407.15312.1 vs. uniprot
Match: A0A3R5TZL4_9STRA (Cytochrome b559 subunit beta n=1 Tax=Characiopsis acuta TaxID=2040456 RepID=A0A3R5TZL4_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 6.760e-20
Identity = 35/43 (81.40%), Postives = 39/43 (90.70%), Query Frame = 0
Query:    1 MTRNTNQPVAYPIFTFRWLALHGLAVPAIFFLGAITSMQFIQR 43
            M R TNQPV YPIFTFRWLA+HGLA+P +FFLGAIT+MQFIQR
Sbjct:    1 MIRGTNQPVVYPIFTFRWLAVHGLAIPTVFFLGAITAMQFIQR 43          
BLAST of mRNA_H-paniculata_contig73407.15312.1 vs. uniprot
Match: A0A1C9CCM0_9RHOD (Cytochrome b559 subunit beta n=2 Tax=Rhodophyta TaxID=2763 RepID=A0A1C9CCM0_9RHOD)

HSP 1 Score: 82.0 bits (201), Expect = 6.900e-20
Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = 0
Query:    1 MTRN-TNQPVAYPIFTFRWLALHGLAVPAIFFLGAITSMQFIQR 43
            MTRN TNQP+ YPIFTFRWLA+HGL VP +FFLGAITSMQFIQR
Sbjct:    1 MTRNNTNQPITYPIFTFRWLAIHGLGVPTVFFLGAITSMQFIQR 44          
BLAST of mRNA_H-paniculata_contig73407.15312.1 vs. uniprot
Match: PSBF_PHATC (Cytochrome b559 subunit beta n=81 Tax=cellular organisms TaxID=131567 RepID=PSBF_PHATC)

HSP 1 Score: 81.6 bits (200), Expect = 9.610e-20
Identity = 34/43 (79.07%), Postives = 39/43 (90.70%), Query Frame = 0
Query:    1 MTRNTNQPVAYPIFTFRWLALHGLAVPAIFFLGAITSMQFIQR 43
            M +N NQPVAYPIFTFRWLA+HGLA+P +FFLG IT+MQFIQR
Sbjct:    1 MAKNINQPVAYPIFTFRWLAIHGLAIPTVFFLGGITAMQFIQR 43          
BLAST of mRNA_H-paniculata_contig73407.15312.1 vs. uniprot
Match: PSBF_GRATL (Cytochrome b559 subunit beta n=77 Tax=Rhodophyta TaxID=2763 RepID=PSBF_GRATL)

HSP 1 Score: 81.3 bits (199), Expect = 1.390e-19
Identity = 35/44 (79.55%), Postives = 42/44 (95.45%), Query Frame = 0
Query:    1 MTR-NTNQPVAYPIFTFRWLALHGLAVPAIFFLGAITSMQFIQR 43
            MTR N+NQP++YPIFTFRWLA+HG+A+P +FFLGAITSMQFIQR
Sbjct:    1 MTRGNSNQPISYPIFTFRWLAIHGIAIPTVFFLGAITSMQFIQR 44          
BLAST of mRNA_H-paniculata_contig73407.15312.1 vs. uniprot
Match: PSBF_NEOYE (Cytochrome b559 subunit beta n=17 Tax=Eukaryota TaxID=2759 RepID=PSBF_NEOYE)

HSP 1 Score: 80.9 bits (198), Expect = 1.980e-19
Identity = 34/40 (85.00%), Postives = 38/40 (95.00%), Query Frame = 0
Query:    4 NTNQPVAYPIFTFRWLALHGLAVPAIFFLGAITSMQFIQR 43
            N NQPV+YPIFTFRWLA+HGLA+P +FFLGAITSMQFIQR
Sbjct:    5 NANQPVSYPIFTFRWLAIHGLAIPTVFFLGAITSMQFIQR 44          
BLAST of mRNA_H-paniculata_contig73407.15312.1 vs. uniprot
Match: PSBF_EMIHU (Cytochrome b559 subunit beta n=11 Tax=Eukaryota TaxID=2759 RepID=PSBF_EMIHU)

HSP 1 Score: 80.5 bits (197), Expect = 2.700e-19
Identity = 35/40 (87.50%), Postives = 37/40 (92.50%), Query Frame = 0
Query:    4 NTNQPVAYPIFTFRWLALHGLAVPAIFFLGAITSMQFIQR 43
            NTNQPVAYPIFTFRWL +H LAVP +FFLGAITSMQFIQR
Sbjct:    3 NTNQPVAYPIFTFRWLTIHALAVPTVFFLGAITSMQFIQR 42          
BLAST of mRNA_H-paniculata_contig73407.15312.1 vs. uniprot
Match: A0A0D3M5G8_9STRA (Cytochrome b559 subunit beta n=3 Tax=cellular organisms TaxID=131567 RepID=A0A0D3M5G8_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 2.700e-19
Identity = 34/41 (82.93%), Postives = 39/41 (95.12%), Query Frame = 0
Query:    3 RNTNQPVAYPIFTFRWLALHGLAVPAIFFLGAITSMQFIQR 43
            +NTNQPV YPIFTFRWLA+HGLAVP +FFLG+IT+MQFIQR
Sbjct:    2 QNTNQPVVYPIFTFRWLAVHGLAVPTVFFLGSITAMQFIQR 42          
BLAST of mRNA_H-paniculata_contig73407.15312.1 vs. uniprot
Match: C6KIP2_AURAN (Cytochrome b559 subunit beta n=3 Tax=Pelagomonadales TaxID=54409 RepID=C6KIP2_AURAN)

HSP 1 Score: 80.5 bits (197), Expect = 2.760e-19
Identity = 36/43 (83.72%), Postives = 39/43 (90.70%), Query Frame = 0
Query:    1 MTRNTNQPVAYPIFTFRWLALHGLAVPAIFFLGAITSMQFIQR 43
            M +  NQPVAYPIFTFRWLA+HGLAVP +FFLGAITSMQFIQR
Sbjct:    1 MIKVLNQPVAYPIFTFRWLAVHGLAVPTVFFLGAITSMQFIQR 43          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig73407.15312.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0S0GJY0_COSCS5.960e-2393.02Cytochrome b559 subunit beta n=68 Tax=Stramenopile... [more]
A0A3R5UAF7_9STRA3.350e-2086.05Cytochrome b559 subunit beta n=2 Tax=Eustigmatales... [more]
A0A3R5TZL4_9STRA6.760e-2081.40Cytochrome b559 subunit beta n=1 Tax=Characiopsis ... [more]
A0A1C9CCM0_9RHOD6.900e-2084.09Cytochrome b559 subunit beta n=2 Tax=Rhodophyta Ta... [more]
PSBF_PHATC9.610e-2079.07Cytochrome b559 subunit beta n=81 Tax=cellular org... [more]
PSBF_GRATL1.390e-1979.55Cytochrome b559 subunit beta n=77 Tax=Rhodophyta T... [more]
PSBF_NEOYE1.980e-1985.00Cytochrome b559 subunit beta n=17 Tax=Eukaryota Ta... [more]
PSBF_EMIHU2.700e-1987.50Cytochrome b559 subunit beta n=11 Tax=Eukaryota Ta... [more]
A0A0D3M5G8_9STRA2.700e-1982.93Cytochrome b559 subunit beta n=3 Tax=cellular orga... [more]
C6KIP2_AURAN2.760e-1983.72Cytochrome b559 subunit beta n=3 Tax=Pelagomonadal... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006241Photosystem II cytochrome b559, beta subunitTIGRFAMTIGR01333TIGR01333coord: 1..43
e-value: 3.3E-26
score: 88.5
IPR006241Photosystem II cytochrome b559, beta subunitPIRSFPIRSF000037Cytochrome_PsbFcoord: 1..43
e-value: 7.3E-27
score: 90.4
IPR006241Photosystem II cytochrome b559, beta subunitHAMAPMF_00643PSII_PsbFcoord: 5..43
score: 19.594
IPR013081Photosystem II cytochrome b559, N-terminalPFAMPF00283Cytochrom_B559coord: 6..33
e-value: 1.0E-16
score: 60.0
NoneNo IPR availablePANTHERPTHR33391FAMILY NOT NAMEDcoord: 2..43
NoneNo IPR availablePANTHERPTHR33391:SF9coord: 2..43
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 42..43
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..41
NoneNo IPR availableSUPERFAMILY161045Cytochrome b559 subunitscoord: 10..43
NoneNo IPR availableTMHMMTMhelixcoord: 13..35
IPR006216Photosystem II cytochrome b559, conserved sitePROSITEPS00537CYTOCHROME_B559coord: 13..27

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig73407contigH-paniculata_contig73407:452..583 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig73407.15312.1mRNA_H-paniculata_contig73407.15312.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig73407 327..583 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig73407.15312.1 ID=prot_H-paniculata_contig73407.15312.1|Name=mRNA_H-paniculata_contig73407.15312.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=44bp
MTRNTNQPVAYPIFTFRWLALHGLAVPAIFFLGAITSMQFIQR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006241PSII_cyt_b559_bsu
IPR013081PSII_cyt_b559_N
IPR006216PSII_cyt_b559_CS