prot_H-paniculata_contig73407.15311.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig73407.15311.1
Unique Nameprot_H-paniculata_contig73407.15311.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length40
Homology
BLAST of mRNA_H-paniculata_contig73407.15311.1 vs. uniprot
Match: D1J7D2_ECTSI (Photosystem II reaction center protein J n=52 Tax=Phaeophyceae TaxID=2870 RepID=D1J7D2_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 1.460e-17
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 0
Query:    1 MAGTGRVPLWLVALAGGLGVIVVVGTFIFGSYSGLGSSL 39
            MAGTGRVPLWLVALAGGLGVIVVVGTFIFGSYSGLGSSL
Sbjct:    1 MAGTGRVPLWLVALAGGLGVIVVVGTFIFGSYSGLGSSL 39          
BLAST of mRNA_H-paniculata_contig73407.15311.1 vs. uniprot
Match: B7T216_VAULI (Photosystem II reaction center protein J n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T216_VAULI)

HSP 1 Score: 66.6 bits (161), Expect = 6.750e-14
Identity = 31/39 (79.49%), Postives = 36/39 (92.31%), Query Frame = 0
Query:    1 MAGTGRVPLWLVALAGGLGVIVVVGTFIFGSYSGLGSSL 39
            M GTGR+PLWL+AL GGLGV+ VVG+FIFG+YSGLGSSL
Sbjct:    1 MTGTGRIPLWLIALIGGLGVLAVVGSFIFGAYSGLGSSL 39          
BLAST of mRNA_H-paniculata_contig73407.15311.1 vs. uniprot
Match: A0A7S6ZPA6_9STRA (Photosystem II reaction center protein J n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6ZPA6_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 9.590e-14
Identity = 34/39 (87.18%), Postives = 34/39 (87.18%), Query Frame = 0
Query:    1 MAGTGRVPLWLVALAGGLGVIVVVGTFIFGSYSGLGSSL 39
            M   GRVPLWLVAL GGLGVI VVGTFIFGSYSGLGSSL
Sbjct:    1 MPNPGRVPLWLVALVGGLGVITVVGTFIFGSYSGLGSSL 39          
BLAST of mRNA_H-paniculata_contig73407.15311.1 vs. uniprot
Match: A0A7U0QG16_OLILU (Photosystem II reaction center protein J n=1 Tax=Olisthodiscus luteus TaxID=83000 RepID=A0A7U0QG16_OLILU)

HSP 1 Score: 62.8 bits (151), Expect = 2.270e-12
Identity = 27/39 (69.23%), Postives = 36/39 (92.31%), Query Frame = 0
Query:    1 MAGTGRVPLWLVALAGGLGVIVVVGTFIFGSYSGLGSSL 39
            MAGTGR+PLW+VA+  GLG++ V+GTFI+G+YSG+GSSL
Sbjct:    1 MAGTGRIPLWMVAVVAGLGILAVLGTFIYGAYSGIGSSL 39          
BLAST of mRNA_H-paniculata_contig73407.15311.1 vs. uniprot
Match: PSBJ_GRATL (Photosystem II reaction center protein J n=139 Tax=Rhodophyta TaxID=2763 RepID=PSBJ_GRATL)

HSP 1 Score: 62.4 bits (150), Expect = 3.230e-12
Identity = 30/39 (76.92%), Postives = 34/39 (87.18%), Query Frame = 0
Query:    1 MAGTGRVPLWLVALAGGLGVIVVVGTFIFGSYSGLGSSL 39
            MAGTGRVPLWLVA  GG+ VI V+G FI+GSYSG+GSSL
Sbjct:    1 MAGTGRVPLWLVATVGGIAVITVLGIFIYGSYSGIGSSL 39          
BLAST of mRNA_H-paniculata_contig73407.15311.1 vs. uniprot
Match: C6KIX8_9STRA (Photosystem II reaction center protein J n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=C6KIX8_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 3.230e-12
Identity = 30/39 (76.92%), Postives = 34/39 (87.18%), Query Frame = 0
Query:    1 MAGTGRVPLWLVALAGGLGVIVVVGTFIFGSYSGLGSSL 39
            MA TGR+PLWL+AL GGL VIVV+  FI+GSYSGLGSSL
Sbjct:    1 MASTGRIPLWLIALVGGLAVIVVLSAFIYGSYSGLGSSL 39          
BLAST of mRNA_H-paniculata_contig73407.15311.1 vs. uniprot
Match: A0A516ZAG8_9STRA (Photosystem II reaction center protein J n=3 Tax=Dictyochophyceae TaxID=39119 RepID=A0A516ZAG8_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 4.590e-12
Identity = 30/39 (76.92%), Postives = 34/39 (87.18%), Query Frame = 0
Query:    1 MAGTGRVPLWLVALAGGLGVIVVVGTFIFGSYSGLGSSL 39
            MAGTGR+PLWLVAL GGL VI ++  FI+GSYSGLGSSL
Sbjct:    1 MAGTGRIPLWLVALVGGLAVIAMLSIFIYGSYSGLGSSL 39          
BLAST of mRNA_H-paniculata_contig73407.15311.1 vs. uniprot
Match: A0A3R5V0N1_9STRA (Photosystem II reaction center protein J n=13 Tax=Eustigmatophyceae TaxID=5747 RepID=A0A3R5V0N1_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 6.530e-12
Identity = 29/39 (74.36%), Postives = 33/39 (84.62%), Query Frame = 0
Query:    1 MAGTGRVPLWLVALAGGLGVIVVVGTFIFGSYSGLGSSL 39
            MA TGRVPLWLVA   GLG++ +VG FI+GSYSGLGSSL
Sbjct:    1 MASTGRVPLWLVAFVAGLGILTIVGIFIYGSYSGLGSSL 39          
BLAST of mRNA_H-paniculata_contig73407.15311.1 vs. uniprot
Match: A0A6M3WAT3_COROI (Photosystem II reaction center protein J n=4 Tax=Corallina TaxID=35169 RepID=A0A6M3WAT3_COROI)

HSP 1 Score: 60.8 bits (146), Expect = 1.320e-11
Identity = 29/39 (74.36%), Postives = 34/39 (87.18%), Query Frame = 0
Query:    1 MAGTGRVPLWLVALAGGLGVIVVVGTFIFGSYSGLGSSL 39
            MAGTGRVPLWLVA  GG+  +VV+G FI+GSYSG+GSSL
Sbjct:    1 MAGTGRVPLWLVATFGGIAALVVLGIFIYGSYSGIGSSL 39          
BLAST of mRNA_H-paniculata_contig73407.15311.1 vs. uniprot
Match: A0A0G4KBH6_9FLOR (Photosystem II reaction center protein J n=2 Tax=Rhodomelaceae TaxID=2803 RepID=A0A0G4KBH6_9FLOR)

HSP 1 Score: 60.8 bits (146), Expect = 1.320e-11
Identity = 29/39 (74.36%), Postives = 34/39 (87.18%), Query Frame = 0
Query:    1 MAGTGRVPLWLVALAGGLGVIVVVGTFIFGSYSGLGSSL 39
            M+ TGRVPLWLVA AGG+ V+ VVG FI+GSYSG+GSSL
Sbjct:    1 MSNTGRVPLWLVATAGGIAVLTVVGIFIYGSYSGIGSSL 39          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig73407.15311.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D1J7D2_ECTSI1.460e-17100.00Photosystem II reaction center protein J n=52 Tax=... [more]
B7T216_VAULI6.750e-1479.49Photosystem II reaction center protein J n=1 Tax=V... [more]
A0A7S6ZPA6_9STRA9.590e-1487.18Photosystem II reaction center protein J n=1 Tax=S... [more]
A0A7U0QG16_OLILU2.270e-1269.23Photosystem II reaction center protein J n=1 Tax=O... [more]
PSBJ_GRATL3.230e-1276.92Photosystem II reaction center protein J n=139 Tax... [more]
C6KIX8_9STRA3.230e-1276.92Photosystem II reaction center protein J n=1 Tax=A... [more]
A0A516ZAG8_9STRA4.590e-1276.92Photosystem II reaction center protein J n=3 Tax=D... [more]
A0A3R5V0N1_9STRA6.530e-1274.36Photosystem II reaction center protein J n=13 Tax=... [more]
A0A6M3WAT3_COROI1.320e-1174.36Photosystem II reaction center protein J n=4 Tax=C... [more]
A0A0G4KBH6_9FLOR1.320e-1174.36Photosystem II reaction center protein J n=2 Tax=R... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002682Photosystem II PsbJPFAMPF01788PsbJcoord: 1..39
e-value: 3.0E-20
score: 71.8
IPR002682Photosystem II PsbJPANTHERPTHR34812FAMILY NOT NAMEDcoord: 1..39
IPR002682Photosystem II PsbJHAMAPMF_01305PSII_PsbJcoord: 1..39
score: 14.996
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 7..29
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 30..39
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..6
NoneNo IPR availableTMHMMTMhelixcoord: 7..29
IPR037267Photosystem II PsbJ superfamilySUPERFAMILY161021Photosystem II reaction center protein J, PsbJcoord: 6..39

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig73407contigH-paniculata_contig73407:136..255 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig73407.15311.1mRNA_H-paniculata_contig73407.15311.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig73407 136..255 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig73407.15311.1 ID=prot_H-paniculata_contig73407.15311.1|Name=mRNA_H-paniculata_contig73407.15311.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=40bp
MAGTGRVPLWLVALAGGLGVIVVVGTFIFGSYSGLGSSL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002682PSII_PsbJ
IPR037267PSII_PsbJ_sf