prot_H-paniculata_contig7256.15230.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig7256.15230.1
Unique Nameprot_H-paniculata_contig7256.15230.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length158
Homology
BLAST of mRNA_H-paniculata_contig7256.15230.1 vs. uniprot
Match: A0A7M5XDS1_9CNID (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5XDS1_9CNID)

HSP 1 Score: 83.6 bits (205), Expect = 6.550e-17
Identity = 41/94 (43.62%), Postives = 58/94 (61.70%), Query Frame = 0
Query:    1 MKDLGFLSRVLGIQVRRNRPNGTISISQGGYIREVLKRHGFDECRGVPTPVEGKVKISAPGNSERSSNSSEYRGMVGSLMYASTGTRPNTAYAV 94
            M D G ++ +LG++VRR+R  G I I Q  Y+R VL+R G DECR + TP+E           E+  N   Y+  +GSL+YAS GTRP+ +Y+V
Sbjct:   84 MVDQGEINYILGMRVRRDRQAGIIRIDQSAYLRNVLQRFGMDECRPISTPMETGKSFEKLAPDEKPVNLKSYQAAIGSLIYASIGTRPDLSYSV 177          
BLAST of mRNA_H-paniculata_contig7256.15230.1 vs. uniprot
Match: Q9LVY5_ARATH (Copia-like retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9LVY5_ARATH)

HSP 1 Score: 86.7 bits (213), Expect = 8.530e-17
Identity = 44/105 (41.90%), Postives = 66/105 (62.86%), Query Frame = 0
Query:    1 MKDLGFLSRVLGIQVRRNRPNGTISISQGGYIREVLKRHGFDECRGVPTPVEGKVKISAPGNSERSSNSS--EYRGMVGSLMYASTGTRPNTAYAVHQAARRMRN 103
            MKD+G  SR+LGI + RNR  GT+ +SQ  Y+ +V++R    + +GV TP+    K+SA  N++ S ++    Y  +VGS+MYA  G RP+ AYA+   +R M N
Sbjct:  966 MKDMGAASRILGIDIERNREEGTLCLSQSKYLEKVIQRFRMADAKGVSTPIGAHFKLSAVRNNDESVDTEVCPYSSVVGSVMYAMIGNRPDVAYALGLVSRFMSN 1070          
BLAST of mRNA_H-paniculata_contig7256.15230.1 vs. uniprot
Match: A0A537R0H1_9PROT (DDE-type integrase/transposase/recombinase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537R0H1_9PROT)

HSP 1 Score: 86.3 bits (212), Expect = 1.130e-16
Identity = 45/96 (46.88%), Postives = 60/96 (62.50%), Query Frame = 0
Query:    1 MKDLGFLSRVLGIQVRRNRPNGTISISQGGYIREVLKRHGFDECRGVPTPVEGKVKISAPGNSERSSNSSEYRGMVGSLMYASTGTRPNTAYAVHQ 96
            MKDLG ++  LG+ + R+R N TI ++Q  YI  V+KR G + C  V TP+    K+     SE S N  EY+ +VGSLMYA  GTRP+ A+AV Q
Sbjct:  596 MKDLGEINHYLGMHIIRDRRNQTIHVNQTAYINAVIKRAGMEGCNAVSTPMIPGRKLETRKGSEPSVNKHEYQHLVGSLMYAMLGTRPDIAFAVQQ 691          
BLAST of mRNA_H-paniculata_contig7256.15230.1 vs. uniprot
Match: A0A6D2J1R0_9BRAS (Uncharacterized protein n=2 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2J1R0_9BRAS)

HSP 1 Score: 85.1 bits (209), Expect = 2.980e-16
Identity = 45/103 (43.69%), Postives = 65/103 (63.11%), Query Frame = 0
Query:    1 MKDLGFLSRVLGIQVRRNRPNGTISISQGGYIREVLKRHGFDECRGVPTPVEGKVKISAPGNSERSSNSSE--YRGMVGSLMYASTGTRPNTAYAVHQAARRM 101
            MKDLG  SR+LGI ++R+R  G + +SQ GY+ +V+KR    E + V TP+ G  K+SA  ++    ++ +  Y   VGSLMYA  GTRP+ AYA+   +R M
Sbjct: 1068 MKDLGAASRILGIDIKRDRKEGVLWLSQSGYLGKVIKRFNMVEAKTVNTPMGGHFKLSAVSDASECVDTEKVPYSSAVGSLMYAMVGTRPDLAYAIGLVSRFM 1170          
BLAST of mRNA_H-paniculata_contig7256.15230.1 vs. uniprot
Match: A0A293MM55_ORNER (Reverse transcriptase, gag, polyprotein (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293MM55_ORNER)

HSP 1 Score: 84.7 bits (208), Expect = 4.040e-16
Identity = 43/96 (44.79%), Postives = 62/96 (64.58%), Query Frame = 0
Query:    1 MKDLGFLSRVLGIQVRRNRPNGTISISQGGYIREVLKRHGFDECRGVPTPVE-GKVKISAPGNSERSSNSSEYRGMVGSLMYASTGTRPNTAYAVH 95
            +KDLG    +LG++V+R++  GTISISQ  YI EVLKR+G + C+ V TP+E G  +  +    E       Y+ ++GSLMY   GTRP+ A+AV+
Sbjct: 1053 LKDLGEPKYILGLEVKRDKTQGTISISQKKYIGEVLKRYGMENCKPVSTPIEPGLTQEESTSQREEQLQGIPYQSLIGSLMYLVQGTRPDIAFAVN 1148          
BLAST of mRNA_H-paniculata_contig7256.15230.1 vs. uniprot
Match: Q9XEB4_ARATH (Putative polyprotein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9XEB4_ARATH)

HSP 1 Score: 83.6 bits (205), Expect = 9.880e-16
Identity = 41/96 (42.71%), Postives = 61/96 (63.54%), Query Frame = 0
Query:    1 MKDLGFLSRVLGIQVRRNRPNGTISISQGGYIREVLKRHGFDECRGVPTPVEGKVKISAPGNSERSSNSS--EYRGMVGSLMYASTGTRPNTAYAV 94
            MKD+G  SR+LGI + RNR  GT+ +SQ  Y+ +V++R    + +GV TP+    K+SA  N++ S ++    Y   VGS+MYA  GTRP+  YA+
Sbjct:  711 MKDMGAASRILGIDIERNREEGTLCLSQSKYLEKVIQRFRMADAKGVSTPIGAHFKLSAVRNNDESVDTEVCPYSSAVGSVMYAMIGTRPDVVYAL 806          
BLAST of mRNA_H-paniculata_contig7256.15230.1 vs. uniprot
Match: A0A6D2KTV0_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KTV0_9BRAS)

HSP 1 Score: 81.6 bits (200), Expect = 1.920e-15
Identity = 42/103 (40.78%), Postives = 62/103 (60.19%), Query Frame = 0
Query:    1 MKDLGFLSRVLGIQVRRNRPNGTISISQGGYIREVLKRHGFDECRGVPTPVEGKVKISAPGNSERSSNSS--EYRGMVGSLMYASTGTRPNTAYAVHQAARRM 101
            MKDLG  SR+LGI + RNR  GT+ +SQ GY+++V++R    E + V TP+    K+ +  +     ++    Y   VGS+MYA  GTRP+ AYA+   +R M
Sbjct:   37 MKDLGAASRILGIDITRNRKEGTLCLSQSGYLKKVIQRFNMGEAKVVSTPIGAHFKLYSVQDDSECVDTELVPYNSAVGSIMYAMIGTRPDIAYAIGLVSRFM 139          
BLAST of mRNA_H-paniculata_contig7256.15230.1 vs. uniprot
Match: A0A6D2J0E6_9BRAS (Uncharacterized protein n=3 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2J0E6_9BRAS)

HSP 1 Score: 81.6 bits (200), Expect = 4.800e-15
Identity = 42/103 (40.78%), Postives = 62/103 (60.19%), Query Frame = 0
Query:    1 MKDLGFLSRVLGIQVRRNRPNGTISISQGGYIREVLKRHGFDECRGVPTPVEGKVKISAPGNSERSSNSS--EYRGMVGSLMYASTGTRPNTAYAVHQAARRM 101
            MKDLG  SR+LGI + RNR  GT+ +SQ GY+++V++R    E + V TP+    K+ +  +     ++    Y   VGS+MYA  GTRP+ AYA+   +R M
Sbjct: 1062 MKDLGAASRILGIDITRNRKEGTLCLSQSGYLKKVIQRFNMGEAKVVSTPIGAHFKLYSVQDDSECVDTELVPYNSAVGSIMYAMIGTRPDIAYAIGLVSRFM 1164          
BLAST of mRNA_H-paniculata_contig7256.15230.1 vs. uniprot
Match: UPI00142E19AD (uncharacterized protein LOC103874474 n=1 Tax=Brassica campestris TaxID=3711 RepID=UPI00142E19AD)

HSP 1 Score: 81.3 bits (199), Expect = 6.540e-15
Identity = 42/103 (40.78%), Postives = 65/103 (63.11%), Query Frame = 0
Query:    1 MKDLGFLSRVLGIQVRRNRPNGTISISQGGYIREVLKRHGFDECRGVPTPVEGKVKISAPGNSERSSNSSE--YRGMVGSLMYASTGTRPNTAYAVHQAARRM 101
            MKD+G  SR+LGI ++R+R   T+ + Q GYI++VLKR    E + V TP+    K+++  N++   ++ +  Y   VGS+MYA  GTRP+ AYA+   +R M
Sbjct: 1061 MKDMGPASRILGIDIKRDREQDTLKLCQSGYIQKVLKRFKMSESKAVATPMGSHFKLASVKNADERIDTEKVPYLSAVGSVMYAMVGTRPDVAYALGLVSRFM 1163          
BLAST of mRNA_H-paniculata_contig7256.15230.1 vs. uniprot
Match: A0A1J3F7G4_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3F7G4_NOCCA)

HSP 1 Score: 80.9 bits (198), Expect = 8.910e-15
Identity = 42/103 (40.78%), Postives = 62/103 (60.19%), Query Frame = 0
Query:    1 MKDLGFLSRVLGIQVRRNRPNGTISISQGGYIREVLKRHGFDECRGVPTPVEGKVKISAPGNSERSSNSSEY--RGMVGSLMYASTGTRPNTAYAVHQAARRM 101
            MKD+G  SR+LGI ++R+R  G + +SQ  Y+ +V+KR    E + V TP+ G  K+SA        ++ +Y     VGS+MYA  GTRP+ AYA+   +R M
Sbjct: 1063 MKDMGAASRILGIDIKRDRKEGVLYLSQSSYLEKVVKRFNMGEAKSVNTPIGGHFKLSAVKEVSECIDTEKYPYSSAVGSVMYAMIGTRPDIAYAIGLISRFM 1165          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7256.15230.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7M5XDS1_9CNID6.550e-1743.62Reverse transcriptase Ty1/copia-type domain-contai... [more]
Q9LVY5_ARATH8.530e-1741.90Copia-like retroelement pol polyprotein n=1 Tax=Ar... [more]
A0A537R0H1_9PROT1.130e-1646.88DDE-type integrase/transposase/recombinase n=1 Tax... [more]
A0A6D2J1R0_9BRAS2.980e-1643.69Uncharacterized protein n=2 Tax=Microthlaspi errat... [more]
A0A293MM55_ORNER4.040e-1644.79Reverse transcriptase, gag, polyprotein (Fragment)... [more]
Q9XEB4_ARATH9.880e-1642.71Putative polyprotein n=1 Tax=Arabidopsis thaliana ... [more]
A0A6D2KTV0_9BRAS1.920e-1540.78Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6D2J0E6_9BRAS4.800e-1540.78Uncharacterized protein n=3 Tax=Microthlaspi errat... [more]
UPI00142E19AD6.540e-1540.78uncharacterized protein LOC103874474 n=1 Tax=Brass... [more]
A0A1J3F7G4_NOCCA8.910e-1540.78Retrovirus-related Pol polyprotein from transposon... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 131..157
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 109..130
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..108
NoneNo IPR availableTMHMMTMhelixcoord: 109..131

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7256contigH-paniculata_contig7256:2658..3206 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7256.15230.1mRNA_H-paniculata_contig7256.15230.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig7256 2577..3567 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig7256.15230.1 ID=prot_H-paniculata_contig7256.15230.1|Name=mRNA_H-paniculata_contig7256.15230.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=158bp
MKDLGFLSRVLGIQVRRNRPNGTISISQGGYIREVLKRHGFDECRGVPTP
VEGKVKISAPGNSERSSNSSEYRGMVGSLMYASTGTRPNTAYAVHQAARR
MRNSAHARAFFVISVLCLTSVLRSAVRVMVTVWKDSLMPIGLKMSKTESP
QQDTYSS*
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