prot_H-paniculata_contig7199.15175.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig7199.15175.1
Unique Nameprot_H-paniculata_contig7199.15175.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length325
Homology
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BLAST of mRNA_H-paniculata_contig7199.15175.1 vs. uniprot
Match: D7G9B5_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9B5_ECTSI)

HSP 1 Score: 151 bits (382), Expect = 4.020e-37
Identity = 255/324 (78.70%), Postives = 277/324 (85.49%), Query Frame = 0 
Query:    1 LDNDVYSCYQVVTTAVFNAGIMACARAGDLDEGMYLLREMWRRGVPRDVQTYNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVSAAAS--SNPTSTSNDNAAGAADGESVARLHDEAKRRGVANVVTYSAAISACAREKRWQDALRLLSEMRHDGIEPNDYSFSAAMWACVHANEGKRALQLFATIMDT-PGTTSPSSSVSENVFNGD 321
            LD++  S    VTTAVFNAGIMACARAG L+EGM+LLREMW R V RDVQTY XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    ++S+A+S               +A  + VA+LH+EA+RRG ANVVTYSAAISACA+EKRW+DAL LL+EMR DGIEPNDYSFSAAMWACV+A+EGKRALQLFATIMD  P  TS +++ S  +   D
Sbjct: 1138 LDDNDESTSTAVTTAVFNAGIMACARAGQLEEGMFLLREMWAREVSRDVQTYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAIKSISSASSFXXXXXXXXXXETKPSASWQKVAKLHEEARRRGKANVVTYSAAISACAKEKRWRDALALLAEMRRDGIEPNDYSFSAAMWACVNADEGKRALQLFATIMDVAPAATSSTTTTSRAIGGAD 1461
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BLAST of mRNA_H-paniculata_contig7199.15175.1 vs. uniprot
Match: A0A6H5KZI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZI4_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 4.090e-35
Identity = 253/324 (78.09%), Postives = 273/324 (84.26%), Query Frame = 0 
Query:    3 NDVYSCYQVVTTAVFNAGIMACARAGDLDEGMYLLREMWRRGVPRDVQTYNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVSAAASSNPTSTSND-----NAAGAADGESVARLHDEAKRRGVANVVTYSAAISACAREKRWQDALRLLSEMRHDGIEPNDYSFSAAMWACVHANEGKRALQLFATIMDTPGTTSPSSSVSENVFNGD 321
            +D  S    VTTAVFNAGIMACARAG L+EGM+LLREMW R V RDVQTY XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   ++S+A+S +                +A  + VA+LH EA+RRG ANVVTYSAAISACA+EKRW+DAL LL+EMR DGIEPNDYSFSAAMWACV+A EGKRALQLFATIMD     + S++ +     GD
Sbjct: 1272 DDEDSASTAVTTAVFNAGIMACARAGQLEEGMFLLREMWAREVSRDVQTYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIKSISSASSFSXXXXXXXXXXXXETKPSASWQKVAKLHAEARRRGKANVVTYSAAISACAKEKRWRDALALLAEMRRDGIEPNDYSFSAAMWACVNAGEGKRALQLFATIMDVAPAATSSAATAATRATGD 1595
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BLAST of mRNA_H-paniculata_contig7199.15175.1 vs. uniprot
Match: A0A835YXS3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXS3_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.290e-8
Identity = 36/96 (37.50%), Postives = 57/96 (59.38%), Query Frame = 0 
Query:  227 LHDEAKRRGVAN--------------------VVTYSAAISACAREKRWQDALRLLSEMRHDGIEPNDYSFSAAMWACVHANEGKRALQLFATIMD 302
            LH EA+ +G+AN                    VVTYSAA++ACA  +RW+ A  L+S+MR  G++PNDY+++A + A  + N  +RAL++F  + +
Sbjct: 1399 LHAEAREKGLANTCESDSVLSXXXXXXXXXXXVVTYSAAMNACAASRRWRAAEGLMSDMRAAGVQPNDYTYAAYIKALANGNRPQRALRVFQELSE 1494
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BLAST of mRNA_H-paniculata_contig7199.15175.1 vs. uniprot
Match: A0A812SYH2_9DINO (EMB2654 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812SYH2_9DINO)

HSP 1 Score: 55.5 bits (132), Expect = 7.810e-5
Identity = 25/52 (48.08%), Postives = 37/52 (71.15%), Query Frame = 0 
Query:  246 ISACAREKRWQDALRLLSEMRHDGIEPNDYSFSAAMWACVHANEGKRALQLF 297
            I ACA+ +RWQDALR+L++M H  +E +  S++AAM ACV  ++ +R   LF
Sbjct:   17 IGACAKTRRWQDALRVLADMGHSRVEVDAVSYNAAMNACVKGSQQQRVPDLF 68
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7199.15175.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G9B5_ECTSI4.020e-3778.70PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KZI4_9PHAE4.090e-3578.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YXS3_9STRA1.290e-837.50Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A812SYH2_9DINO7.810e-548.08EMB2654 protein n=1 Tax=Symbiodinium natans TaxID=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 17..171
e-value: 9.2E-13
score: 48.0
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 100..216
e-value: 2.6E-31
score: 111.3
coord: 217..322
e-value: 5.2E-19
score: 70.9
coord: 7..99
e-value: 2.5E-21
score: 78.5
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 155..188
e-value: 8.2E-6
score: 23.7
coord: 121..154
e-value: 1.3E-7
score: 29.3
coord: 240..273
e-value: 1.9E-9
score: 35.1
coord: 51..83
e-value: 0.0017
score: 16.4
coord: 18..48
e-value: 2.0E-5
score: 22.5
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 238..283
e-value: 1.3E-11
score: 44.5
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 153..187
score: 11.17
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 83..117
score: 10.008
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 273..308
score: 5.788
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 48..82
score: 9.898
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 118..152
score: 12.222
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 238..272
score: 13.077
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 13..47
score: 9.832
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 13..202
coord: 229..301

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7199contigH-paniculata_contig7199:521..10286 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7199.15175.1mRNA_H-paniculata_contig7199.15175.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig7199 521..10286 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig7199.15175.1 ID=prot_H-paniculata_contig7199.15175.1|Name=mRNA_H-paniculata_contig7199.15175.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=325bp
LDNDVYSCYQVVTTAVFNAGIMACARAGDLDEGMYLLREMWRRGVPRDVQ
TYNTAMALCKVVGEWTRAVGLLEAMEAEGITPDRVTFNTVIAACEAGADH
WTAFSLFNHMEREGLTPDVWTYNSLANVLGSCGEWERAVALLGDMKERGL
TPDVVTYSALISACEKAGQVEASLVLLQEMASEGVIANERTFSAAIKAVS
AAASSNPTSTSNDNAAGAADGESVARLHDEAKRRGVANVVTYSAAISACA
REKRWQDALRLLSEMRHDGIEPNDYSFSAAMWACVHANEGKRALQLFATI
MDTPGTTSPSSSVSENVFNGDDSVV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR033443PPR_long
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat