prot_H-paniculata_contig7173.15151.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig7173.15151.1
Unique Nameprot_H-paniculata_contig7173.15151.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length205
Homology
BLAST of mRNA_H-paniculata_contig7173.15151.1 vs. uniprot
Match: A0A5N6P097_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6P097_9ASTR)

HSP 1 Score: 117 bits (293), Expect = 4.390e-27
Identity = 72/210 (34.29%), Postives = 109/210 (51.90%), Query Frame = 0
Query:    4 PKKTDKRATRAAERLYVDLGGPMRVINLGGSSYVMIIVDGYSRFQAVKLIKMKRDAIAALQSYITDIMPKGL-KIGALHTDNGGEFDGDTHLKL-DEHGITHELTPSGTPQYNGVAERRRDLLCEKTIALGS-----EKFWAEAVNYACDITNMSCTLSIEGNVTLYEKWYGTTAPLEHIQPFGTVGYMRKI-IKEHKIVPRGEECSMLG 205
            P++T  RA++  E ++ DL GP+    +GG+ +  ++VD YSR+  V L+K K +A    + +   +  +   K+G L TD GGEF      +  ++HGI  +LT   TPQ NGV ERR   + E T +        E  W EAV +A  I N   T S++   T YE W G    + H++ FG VGY++K+ +   K+  R      LG
Sbjct:  204 PQETTWRASKPLELIHADLCGPITPSIMGGNKFFFLLVDDYSRYMWVYLLKSKDEAFLNFKKFKATVEKENEHKVGTLRTDRGGEFGSKEFFQFCEDHGIKRQLTAPYTPQQNGVVERRNRTIMEVTRSFLKTMEVPETLWGEAVRHAVYILNRVSTRSVKDQ-TPYECWRGKKPVIHHLRVFGCVGYVKKVRVSLGKLSDRSTAMVYLG 412          
BLAST of mRNA_H-paniculata_contig7173.15151.1 vs. uniprot
Match: A0A6A3PLU6_9STRA (Integrase catalytic domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3PLU6_9STRA)

HSP 1 Score: 112 bits (280), Expect = 3.940e-26
Identity = 76/209 (36.36%), Postives = 111/209 (53.11%), Query Frame = 0
Query:    7 TDKRATRAA-ERLYVDLGGPMRVINLGGSSYVMIIVDGYSRFQAVKLIKMKRDAIAALQSYITDIMP-KGLKIGALHTDNGGEFDGDTHLK-LDEHGITHELTPSGTPQYNGVAERRRDLLCEKTIALGSEK-----FWAEAVNYACDITNMSCTLSIEGNVTLYEKWYGTTAPLEHIQPFGTVGYMRKIIKEH--KIVPRGEECSMLG 205
            T+K  TR   E ++ D+ GPM V   GGS+Y++++VD +SR   V  +K K +A+     +  +     G ++  L TDNGGE+      K L +HGI H+ T + TPQ NG+ ER    + E T  L   +     +WAEAVN A  I N   T +   NVT YE WYG    L++++ FG+ G+   I KE   K+  +  +C  LG
Sbjct:   94 TNKVKTRGLLELVHSDIVGPMNVKTPGGSAYILVLVDDFSRMLWVYFLKKKSEALDKFIEFKAEAENLSGKRVQELRTDNGGEYTSKVFAKYLKDHGIRHQKTVAYTPQQNGLVERANRTIVEMTRCLLYHRSMHLRWWAEAVNTAVFIINR--TPNSVNNVTAYEIWYGKRPNLKNVKIFGSTGFAH-IPKEKRKKLDAKSFKCKFLG 299          
BLAST of mRNA_H-paniculata_contig7173.15151.1 vs. uniprot
Match: A0A251U1A0_HELAN (Putative zinc finger, CCHC-type n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251U1A0_HELAN)

HSP 1 Score: 112 bits (281), Expect = 3.090e-25
Identity = 73/210 (34.76%), Postives = 108/210 (51.43%), Query Frame = 0
Query:    4 PKKTDKRATRAAERLYVDLGGPMRVINLGGSSYVMIIVDGYSRFQAVKLIKMKRDAIAALQSYITDIMPKG-LKIGALHTDNGGEFDGDTHLKL-DEHGITHELTPSGTPQYNGVAERRRDLLCEKTIALGS-----EKFWAEAVNYACDITNMSCTLSIEGNVTLYEKWYGTTAPLEHIQPFGTVGYMRKII-KEHKIVPRGEECSMLG 205
            PK+   RAT+  E L+ DL GP+     GG+ Y ++IVD +SR+  V L+K K +A    + + T +  +   KI  L TD GGEF+    +   +E GI  + T   TPQ NGV ERR   +   T ++       E  W EAV +A  + N   T +++ N T YE W      L++++ FG VGY  K+  + HK+  R +    LG
Sbjct:  544 PKEAQWRATKPLELLHADLCGPITPQTWGGNRYFLLIVDDFSRYMWVYLLKTKNEAFEKFKIFKTRVEKESKYKIKMLRTDRGGEFNSQVFIDFCNETGIKRQTTAPYTPQQNGVVERRNRTVLGMTRSMLKSMNVPEPLWGEAVRHAVYLLNRIVTKAVK-NKTPYEAWKKKKPNLKYLKVFGCVGYAMKLTGRFHKLEDRSQPLIYLG 752          
BLAST of mRNA_H-paniculata_contig7173.15151.1 vs. uniprot
Match: A0A453NGZ9_AEGTS (Integrase catalytic domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453NGZ9_AEGTS)

HSP 1 Score: 109 bits (273), Expect = 3.050e-24
Identity = 68/210 (32.38%), Postives = 109/210 (51.90%), Query Frame = 0
Query:    4 PKKTDKRATRAAERLYVDLGGPMRVINLGGSSYVMIIVDGYSRFQAVKLIKMKRDAIAALQSY-ITDIMPKGLKIGALHTDNGGEFDGDTHLKLDE-HGITHELTPSGTPQYNGVAERRRDLLCEKTIALGSEK-----FWAEAVNYACDITNMSCTLSIEGNVTLYEKWYGTTAPLEHIQPFGTVGYMRKIIKE-HKIVPRGEECSMLG 205
            P++ + RA++A E ++ DL GP+      G+ Y ++IVD +SR+  + L+K K  A+ A +   +   +    K+ AL TD GGEF      +  E HGI   LT   +PQ NGV ERR   +     ++   K     FW EAVN A  + N + T S+ G +T YE WYG    ++H++ FG + +++ +     K+  R     ++G
Sbjct:  231 PREGNFRASKALELVHGDLCGPITPATPAGNKYFLLIVDDFSRYMWIVLLKTKDQALQAFRKVKMAAEVESEAKLKALRTDRGGEFKSREFTEFCEAHGIKRYLTAPYSPQQNGVVERRNQTVVAMARSMMKSKGMPGKFWGEAVNTAVYLLNRAPTKSVVG-MTPYEAWYGHKPAVDHLRTFGCIAHVKTVAGHTSKLADRSTPMMLVG 439          
BLAST of mRNA_H-paniculata_contig7173.15151.1 vs. uniprot
Match: A0A453NGN6_AEGTS (Uncharacterized protein n=3 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453NGN6_AEGTS)

HSP 1 Score: 109 bits (273), Expect = 3.560e-24
Identity = 68/210 (32.38%), Postives = 109/210 (51.90%), Query Frame = 0
Query:    4 PKKTDKRATRAAERLYVDLGGPMRVINLGGSSYVMIIVDGYSRFQAVKLIKMKRDAIAALQSY-ITDIMPKGLKIGALHTDNGGEFDGDTHLKLDE-HGITHELTPSGTPQYNGVAERRRDLLCEKTIALGSEK-----FWAEAVNYACDITNMSCTLSIEGNVTLYEKWYGTTAPLEHIQPFGTVGYMRKIIKE-HKIVPRGEECSMLG 205
            P++ + RA++A E ++ DL GP+      G+ Y ++IVD +SR+  + L+K K  A+ A +   +   +    K+ AL TD GGEF      +  E HGI   LT   +PQ NGV ERR   +     ++   K     FW EAVN A  + N + T S+ G +T YE WYG    ++H++ FG + +++ +     K+  R     ++G
Sbjct:  276 PREGNFRASKALELVHGDLCGPITPATPAGNKYFLLIVDDFSRYMWIVLLKTKDQALQAFRKVKMAAEVESEAKLKALRTDRGGEFKSREFTEFCEAHGIKRYLTAPYSPQQNGVVERRNQTVVAMARSMMKSKGMPGKFWGEAVNTAVYLLNRAPTKSVVG-MTPYEAWYGHKPAVDHLRTFGCIAHVKTVAGHTSKLADRSTPMMLVG 484          
BLAST of mRNA_H-paniculata_contig7173.15151.1 vs. uniprot
Match: A0A0P1B018_PLAHL (Polyprotein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B018_PLAHL)

HSP 1 Score: 104 bits (259), Expect = 4.950e-24
Identity = 65/213 (30.52%), Postives = 113/213 (53.05%), Query Frame = 0
Query:    1 FAVPKKTDKRATRAAERLYVDLGGPMRVINLGGSSYVMIIVDGYSRFQAVKLIKMKRDAIAALQSYITDIMPK-GLKIGALHTDNGGEFDGDTHLKL-DEHGITHELTPSGTPQYNGVAERRRDLLCEKTIAL-----GSEKFWAEAVNYACDITNMSCTLSIEGNVTLYEKWYGTTAPLEHIQPFGTVGYMR-KIIKEHKIVPRGEECSMLG 205
             A P ++  + T   ER+  D+ GPMR  + G + Y   +VD +SR+ A+ +IK K +     + ++T    + G ++  L +DNG EF   T   +  ++GI ++ +    PQ NGVAER    + EKT ++      S ++WAEAV+ A  ++N S   +   ++T YE  +   + ++H++ FG+ GY     +K  K+ P+  +C  LG
Sbjct:    1 MAFPSRSMTKTTCVLERVQADVMGPMRTSSKGDAKYNFTLVDNFSRYVAISIIKSKSEVAGKFKEFLTLFENQWGTRLRCLQSDNGTEFVDKTMAGICQQNGIVNQRSVPYIPQRNGVAERLNRTIMEKTRSMLYYKSVSTEWWAEAVSTAVYLSNRSSNTA-HPDITPYELAFKMKSQMDHLRVFGSHGYAHIDDVKRTKLEPKSFKCMFLG 212          
BLAST of mRNA_H-paniculata_contig7173.15151.1 vs. uniprot
Match: A0A6A3JY23_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3JY23_9STRA)

HSP 1 Score: 108 bits (271), Expect = 6.380e-24
Identity = 75/209 (35.89%), Postives = 109/209 (52.15%), Query Frame = 0
Query:    7 TDKRATRAA-ERLYVDLGGPMRVINLGGSSYVMIIVDGYSRFQAVKLIKMKRDAIAALQSYITDIMPKGLK-IGALHTDNGGEFDGDTHLK-LDEHGITHELTPSGTPQYNGVAERRRDLLCEKTIALGSEK-----FWAEAVNYACDITNMSCTLSIEGNVTLYEKWYGTTAPLEHIQPFGTVGYMRKIIKEH--KIVPRGEECSMLG 205
            T+K  TR   E ++ D+ GPM V   GGS+Y++++VD +SR   V  +K K +A+     +  +      K +  L TDNGGE+      K L +HGI H+ T + TPQ NG+ ER    + E    L   +     +WAEAVN A  I N   T +   NVT YE WYG    L++++ FG+ G+   I KE   K+  +  +C  LG
Sbjct:   94 TNKVKTRGLLELVHSDIVGPMNVKTPGGSAYILVLVDDFSRMLWVYFLKKKSEALDKFIEFKAEAENLSEKRVQELRTDNGGEYTSKVFAKYLKDHGIRHQKTVAYTPQQNGLVERANRTIVEMARCLLYHRSMHLRWWAEAVNTAVFIINR--TPNSVNNVTAYEIWYGKRPNLKNVKSFGSTGFAH-IPKEKRKKLDAKSFKCKFLG 299          
BLAST of mRNA_H-paniculata_contig7173.15151.1 vs. uniprot
Match: A0A6A3JVQ8_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3JVQ8_9STRA)

HSP 1 Score: 108 bits (269), Expect = 1.120e-23
Identity = 75/209 (35.89%), Postives = 109/209 (52.15%), Query Frame = 0
Query:    7 TDKRATRAA-ERLYVDLGGPMRVINLGGSSYVMIIVDGYSRFQAVKLIKMKRDAIAALQSYITDIMPKGLK-IGALHTDNGGEFDGDTHLK-LDEHGITHELTPSGTPQYNGVAERRRDLLCEKTIALGSEK-----FWAEAVNYACDITNMSCTLSIEGNVTLYEKWYGTTAPLEHIQPFGTVGYMRKIIKEH--KIVPRGEECSMLG 205
            T+K  TR   E ++ D+ GPM V   GGS+Y++++VD +SR   V  +K K +A+     +  +      K +  L TDNGGE+      K L +HGI H+ T + TPQ NG+ ER    + E    L   +     +WAEAVN A  I N   T +   NVT YE WYG    L++++ FG+ G+   I KE   K+  +  +C  LG
Sbjct:  443 TNKVKTRGLLELVHSDIVGPMNVKTPGGSAYILVLVDDFSRMLWVYFLKKKSEALDKFIEFKAEAENLSEKRVQELRTDNGGEYTSKVFAKYLKDHGIRHQKTVAYTPQQNGLVERANRTIVEMARCLLYHRSMHLRWWAEAVNTAVFIINR--TPNSVNNVTAYEIWYGKRPNLKNVKIFGSTGFAH-IPKEKRKKLDAKSFKCKFLG 648          
BLAST of mRNA_H-paniculata_contig7173.15151.1 vs. uniprot
Match: A0A5N6PYG1_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PYG1_9ASTR)

HSP 1 Score: 107 bits (267), Expect = 2.240e-23
Identity = 67/205 (32.68%), Postives = 110/205 (53.66%), Query Frame = 0
Query:   10 RATRAAERLYVDLGGPMRVINLGGSSYVMIIVDGYSRFQAVKLIKMKRDAIAALQSYITDIMPK-GLKIGALHTDNGGEF---DGDTHLKLDEHGITHELTPSGTPQYNGVAERRRDLLCEKTIALGSE-----KFWAEAVNYACDITNMSCTLSIEGNVTLYEKWYGTTAPLEHIQPFGTVGYMRKIIKEHKIVPRGEECSMLG 205
            RA+     ++ D+ GP R+++  G  Y +   D +SR+  V L+K K +A    + +  ++  + G  I A+ +D GGE+   D + HLK  + GI  +LTP GTPQ+NGV+ERR   L +   ++ S       FW+ A+  A  I NM  T  ++   T YE WYG    L +++ +G   Y+++    +K+ PRGE+   +G
Sbjct:  508 RASDLLGLIHTDVCGPFRIMSRSGERYFITFTDDFSRYGYVYLLKHKHEAFEVFKVFQNEVQNQLGKTIKAIRSDRGGEYLSYDFNEHLK--KCGIISQLTPPGTPQHNGVSERRNRTLLDMVRSMMSRANLPHSFWSYALETAARIVNMVPTKKVDK--TPYELWYGRKPNLSYLRVWGCEAYVKRETS-NKLDPRGEKVIFVG 707          
BLAST of mRNA_H-paniculata_contig7173.15151.1 vs. uniprot
Match: A0A085ND40_9BILA (Uncharacterized protein n=1 Tax=Trichuris suis TaxID=68888 RepID=A0A085ND40_9BILA)

HSP 1 Score: 106 bits (264), Expect = 5.340e-23
Identity = 67/186 (36.02%), Postives = 99/186 (53.23%), Query Frame = 0
Query:    6 KTDKRATRAAERLYVDLGGPMRVINLGGSSYVMIIVDGYSRFQAVKLIKMKRDAIAALQSYITDIMPK-GLKIGALHTDNGGEFDGDT-HLKLDEHGITHELTPSGTPQYNGVAERRRDLLCEKTIALG-----SEKFWAEAVNYACDITNMSCTLSIEGNVTLYEKWYGTTAPLEHIQPFGTVGY 184
            K+D RATR  E ++ D  GPM V    G  YV+ ++D YSR+  ++L+K K +    +++Y+  +  + G K     +DNG E+          E GI H+LT   TPQ NGVAERR   L E T  +      S++FW EAV  A  + N   + S+E   T YE +YG+   + H++ FG+  Y
Sbjct:  481 KSDTRATRPVELVHSDSCGPMPVTTPSGHRYVLTLIDDYSRYTEIRLLKSKDEVFDVIKNYVARMNTRFGRKPIIFRSDNGKEYISKALETFFAEQGIEHQLTVPYTPQQNGVAERRNRSLVEMTRCMLLDAGLSKRFWGEAVLTAAYLHNRLPSRSVEW--TPYEHFYGSKPAVSHLRIFGSKAY 664          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7173.15151.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5N6P097_9ASTR4.390e-2734.29Integrase catalytic domain-containing protein n=1 ... [more]
A0A6A3PLU6_9STRA3.940e-2636.36Integrase catalytic domain-containing protein n=2 ... [more]
A0A251U1A0_HELAN3.090e-2534.76Putative zinc finger, CCHC-type n=1 Tax=Helianthus... [more]
A0A453NGZ9_AEGTS3.050e-2432.38Integrase catalytic domain-containing protein n=1 ... [more]
A0A453NGN6_AEGTS3.560e-2432.38Uncharacterized protein n=3 Tax=Aegilops tauschii ... [more]
A0A0P1B018_PLAHL4.950e-2430.52Polyprotein n=1 Tax=Plasmopara halstedii TaxID=478... [more]
A0A6A3JY23_9STRA6.380e-2435.89Integrase catalytic domain-containing protein n=1 ... [more]
A0A6A3JVQ8_9STRA1.120e-2335.89Integrase catalytic domain-containing protein n=1 ... [more]
A0A5N6PYG1_9ASTR2.240e-2332.68Uncharacterized protein n=1 Tax=Mikania micrantha ... [more]
A0A085ND40_9BILA5.340e-2336.02Uncharacterized protein n=1 Tax=Trichuris suis Tax... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 4..192
e-value: 3.5E-18
score: 67.5
IPR001584Integrase, catalytic corePFAMPF00665rvecoord: 12..120
e-value: 5.2E-14
score: 52.5
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 10..124
score: 13.912
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 9..172
NoneNo IPR availablePANTHERPTHR11439:SF250coord: 9..172
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 10..164

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7173contigH-paniculata_contig7173:2341..2976 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7173.15151.1mRNA_H-paniculata_contig7173.15151.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig7173 2341..2976 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig7173.15151.1 ID=prot_H-paniculata_contig7173.15151.1|Name=mRNA_H-paniculata_contig7173.15151.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=205bp
FAVPKKTDKRATRAAERLYVDLGGPMRVINLGGSSYVMIIVDGYSRFQAV
KLIKMKRDAIAALQSYITDIMPKGLKIGALHTDNGGEFDGDTHLKLDEHG
ITHELTPSGTPQYNGVAERRRDLLCEKTIALGSEKFWAEAVNYACDITNM
SCTLSIEGNVTLYEKWYGTTAPLEHIQPFGTVGYMRKIIKEHKIVPRGEE
CSMLG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR001584Integrase_cat-core
IPR039537Retrotran_Ty1/copia-like
IPR012337RNaseH-like_sf