prot_H-paniculata_contig7134.15112.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig7134.15112.1
Unique Nameprot_H-paniculata_contig7134.15112.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length228
Homology
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BLAST of mRNA_H-paniculata_contig7134.15112.1 vs. uniprot
Match: D8LFS9_ECTSI (SET domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFS9_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 3.000e-18
Identity = 47/66 (71.21%), Postives = 53/66 (80.30%), Query Frame = 0 
Query:  115 PFLLTDRGLDPKLLPALRVQRATESELKLAADLPWGESLSQRNEAEVCDVLSAALAAMLEERSSPS 180
            PF LT +GLDP LLPALRVQRATE+ELK+AA+ PWGE+L  RNEA V DVL  ALA ML+ER  PS
Sbjct:  305 PFFLTSKGLDPLLLPALRVQRATETELKVAAETPWGETLGARNEAAVVDVLWNALAGMLKEREGPS 370
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7134.15112.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LFS9_ECTSI3.000e-1871.21SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036464Rubisco LSMT, substrate-binding domain superfamilyGENE3D3.90.1420.10coord: 105..179
e-value: 3.8E-5
score: 25.5
IPR015353Rubisco LSMT, substrate-binding domainPFAMPF09273Rubis-subs-bindcoord: 114..175
e-value: 1.2E-5
score: 26.1
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 109..228
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 87..108
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..86
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..15
score: 0.62
NoneNo IPR availableTMHMMTMhelixcoord: 86..108

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7134contigH-paniculata_contig7134:5957..7700 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7134.15112.1mRNA_H-paniculata_contig7134.15112.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig7134 5819..7700 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig7134.15112.1 ID=prot_H-paniculata_contig7134.15112.1|Name=mRNA_H-paniculata_contig7134.15112.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=228bp
MLLLIFMYLSHRILGPQCGVDYSQLYGICTSHLQESILRFFSVLNFGRGE
EILKIQDTRSPCTTSFLLVILYQAQYRLRNQVNCTGYLLVLVHGTVVYWI
VVMTYNLLRCYAAAPFLLTDRGLDPKLLPALRVQRATESELKLAADLPWG
ESLSQRNEAEVCDVLSAALAAMLEERSSPSCQPQCNGSCHGEGHYTGTSA
DSHSTDIVNPALATNAAVEREGTEGEEG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036464Rubisco_LSMT_subst-bd_sf
IPR015353Rubisco_LSMT_subst-bd