prot_H-paniculata_contig710.15063.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig710.15063.1
Unique Nameprot_H-paniculata_contig710.15063.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length190
Homology
BLAST of mRNA_H-paniculata_contig710.15063.1 vs. uniprot
Match: A0A6H5KMN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMN5_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 2.400e-38
Identity = 72/132 (54.55%), Postives = 94/132 (71.21%), Query Frame = 0
Query:    1 MENLRKKTGKGSSEFEKEAKAEVLSAVLPVMSAFEEAEGNMKLETETEVKYSGNYQAIYRQLDVVYEKIGASDFYAVVGEKFDVRRHQRVSEVYCEAMQANNVMECVSSGLELGSYVISKASCVVSLGPEPK 132
            ++N RK +G G+ ++E +AKA VL A+LP    FE AE  + LETETEVKY+ +YQA+YRQL  V+ K+GA+DF+ VVGEKF   RH++ SE Y   M+   +++CVS GLEL   VI KA CVVSLGPE K
Sbjct:   29 VDNFRKSSGAGTGDYEADAKAAVLRAMLPAFEPFEAAEEALNLETETEVKYNKSYQALYRQLKDVFTKVGATDFFGVVGEKFVYTRHEKASEEYNPVMKEGLIIKCVSPGLELKKNVIRKAVCVVSLGPEKK 160          
BLAST of mRNA_H-paniculata_contig710.15063.1 vs. uniprot
Match: D8LSM3_ECTSI (Co-chaperone grpE family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSM3_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 6.110e-35
Identity = 70/130 (53.85%), Postives = 92/130 (70.77%), Query Frame = 0
Query:    1 MENLRKKTGKGSSEFEKEAKAEVLSAVLPVMSAFEEAEGNMKLETETEVKYSGNYQAIYRQLDVVYEKIGASDFYAVVGEKFDVRRHQRVSEVYCEAMQANNVMECVSSGLELGSYVISKASCVVSLGPE 130
            ++N RK +G G+ ++E +AKA VL A+LP    FE AE  + L TETEVKY+ +YQA+YRQL  V+ KIGA+DF+ VVGEKF   RH++ SE +   M+   +++CVS GLEL   VI KA CVVSLGPE
Sbjct:  154 VDNFRKSSGAGTGDYEADAKAAVLRAMLPAFEPFEAAEEALNLATETEVKYNKSYQALYRQLKDVFTKIGATDFFGVVGEKFVYTRHEKASEEHNPVMKEGLIIKCVSPGLELKKNVIRKAVCVVSLGPE 283          
BLAST of mRNA_H-paniculata_contig710.15063.1 vs. uniprot
Match: A0A7C6ESK5_9BACT (Protein GrpE n=1 Tax=bacterium TaxID=1869227 RepID=A0A7C6ESK5_9BACT)

HSP 1 Score: 53.5 bits (127), Expect = 2.160e-5
Identity = 36/126 (28.57%), Postives = 65/126 (51.59%), Query Frame = 0
Query:    1 MENLRKKTGKGSSEFEKEAKAEVLSAVLPVMSAFEEAEGNMKLETETEVKYSGNYQAIYRQLDVVYEKIGASDFYAVVGEKFDVRRHQRVSEVYCEAMQANNVMECVSSGLELGSYVISKASCVVS 126
             +N RK+T +   E  + A A+++  +LPV+  FE +   ++ + E    ++   + IY++L  V EK G     +V G+ FD  +H+ + +V  E ++ N V+E    G  L   V+  A  +VS
Sbjct:   83 FDNYRKRTQREFVELVRNANADLILQILPVVDDFERSLKALEGQNENFSAFAEGVRMIYQKLMGVLEKQGVKKIESV-GKPFDPEKHEALLQVEAEGVEPNTVVEEHQPGYFLNDKVLRHAKVIVS 207          
BLAST of mRNA_H-paniculata_contig710.15063.1 vs. uniprot
Match: A0A1C6AWY6_9FIRM (Protein GrpE n=2 Tax=Eubacteriales TaxID=186802 RepID=A0A1C6AWY6_9FIRM)

HSP 1 Score: 52.4 bits (124), Expect = 4.500e-5
Identity = 42/125 (33.60%), Postives = 60/125 (48.00%), Query Frame = 0
Query:    2 ENLRKKTGKGSSEFEKEAKAEVLSAVLPVMSAFEEAEGNMKLETETEVKYSGNYQAIYRQLDVVYEKIGASDFYAVVGEKFDVRRHQRVSEVYCEAMQANNVMECVSSGLELGSYVISKASCVVS 126
            +N RK++ K       +AKA+ L+A LPV    E A   +K ET  E    G  +    QL  +  K+G S+  A+ GE FD   H  V  V  EA   N +++   +G +LG  VI  A   V+
Sbjct:   68 DNFRKRSQKEKESIYADAKADALTAFLPVYDNLERA---LKQETADEAFKKG-VEMTMTQLREILTKLGISEIPAL-GESFDPNLHNAVMHVEDEAAGENTIVDVFQAGFKLGDKVIRFAMVKVA 187          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig710.15063.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KMN5_9PHAE2.400e-3854.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSM3_ECTSI6.110e-3553.85Co-chaperone grpE family protein n=1 Tax=Ectocarpu... [more]
A0A7C6ESK5_9BACT2.160e-528.57Protein GrpE n=1 Tax=bacterium TaxID=1869227 RepID... [more]
A0A1C6AWY6_9FIRM4.500e-533.60Protein GrpE n=2 Tax=Eubacteriales TaxID=186802 Re... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013805GrpE nucleotide exchange factor, coiled-coilGENE3D3.90.20.20coord: 1..67
e-value: 4.6E-5
score: 25.0
IPR013805GrpE nucleotide exchange factor, coiled-coilSUPERFAMILY58014Coiled-coil domain of nucleotide exchange factor GrpEcoord: 1..70
IPR000740GrpE nucleotide exchange factorPFAMPF01025GrpEcoord: 1..126
e-value: 1.8E-18
score: 66.8
IPR000740GrpE nucleotide exchange factorPANTHERPTHR21237GRPE PROTEINcoord: 1..126
IPR009012GrpE nucleotide exchange factor, headSUPERFAMILY51064Head domain of nucleotide exchange factor GrpEcoord: 76..127

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig710contigH-paniculata_contig710:8139..11265 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig710.15063.1mRNA_H-paniculata_contig710.15063.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig710 5837..12418 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig710.15063.1 ID=prot_H-paniculata_contig710.15063.1|Name=mRNA_H-paniculata_contig710.15063.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=190bp
MENLRKKTGKGSSEFEKEAKAEVLSAVLPVMSAFEEAEGNMKLETETEVK
YSGNYQAIYRQLDVVYEKIGASDFYAVVGEKFDVRRHQRVSEVYCEAMQA
NNVMECVSSGLELGSYVISKASCVVSLGPEPKVEEEKPADAGEEEGVEGD
SSAEEVAGAESLKEAGVEVEESEVEREAEAEAGAEELEA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013805GrpE_coiled_coil
IPR000740GrpE
IPR009012GrpE_head