prot_H-paniculata_contig70260.14975.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig70260.14975.1
Unique Nameprot_H-paniculata_contig70260.14975.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length38
Homology
BLAST of mRNA_H-paniculata_contig70260.14975.1 vs. uniprot
Match: A0A6B7EVZ8_9PHAE (Photosystem II protein Y n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EVZ8_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 7.470e-17
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 0
Query:    1 MDIRLLFVFFPVLAAASWALYNIGRVALQQYKKIANS 37
            MDIRLLFVFFPVLAAASWALYNIGRVALQQYKKIANS
Sbjct:    1 MDIRLLFVFFPVLAAASWALYNIGRVALQQYKKIANS 37          
BLAST of mRNA_H-paniculata_contig70260.14975.1 vs. uniprot
Match: A0A1I9LW23_9PHAE (Photosystem II protein Y n=2 Tax=Ectocarpales TaxID=2877 RepID=A0A1I9LW23_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 8.470e-14
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 0
Query:    1 MDIRLLFVFFPVLAAASWALYNIGRVALQQYKKIAN 36
            MD+RLLFVFFPVLAAASWALYNIGRVALQQY KI +
Sbjct:    1 MDLRLLFVFFPVLAAASWALYNIGRVALQQYNKIVS 36          
BLAST of mRNA_H-paniculata_contig70260.14975.1 vs. uniprot
Match: A0A8F0FAT3_9PHAE (Photosystem II protein Y n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAT3_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 1.200e-13
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 0
Query:    1 MDIRLLFVFFPVLAAASWALYNIGRVALQQYKKIAN 36
            MD RL+FVFFPVLAAASWA+YNIGRVALQQYKKIA+
Sbjct:    1 MDGRLIFVFFPVLAAASWAIYNIGRVALQQYKKIAS 36          
BLAST of mRNA_H-paniculata_contig70260.14975.1 vs. uniprot
Match: A0A7T8G5H1_SCYLO (Photosystem II protein Y n=5 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A7T8G5H1_SCYLO)

HSP 1 Score: 66.2 bits (160), Expect = 1.240e-13
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 0
Query:    1 MDIRLLFVFFPVLAAASWALYNIGRVALQQYKKIAN 36
            MD+RLLFVFFPVLAAASWALYNIGRVALQQ+ KIA+
Sbjct:   19 MDLRLLFVFFPVLAAASWALYNIGRVALQQFNKIAS 54          
BLAST of mRNA_H-paniculata_contig70260.14975.1 vs. uniprot
Match: A0A2I4Q2H4_9PHAE (Photosystem II protein Y n=27 Tax=Phaeophyceae TaxID=2870 RepID=A0A2I4Q2H4_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 2.430e-13
Identity = 30/36 (83.33%), Postives = 35/36 (97.22%), Query Frame = 0
Query:    1 MDIRLLFVFFPVLAAASWALYNIGRVALQQYKKIAN 36
            MD+RL+FVFFPVLAAASWALYNIGRVALQQ+ K+A+
Sbjct:    1 MDVRLIFVFFPVLAAASWALYNIGRVALQQFNKLAS 36          
BLAST of mRNA_H-paniculata_contig70260.14975.1 vs. uniprot
Match: A0A8F0JXI6_9PHAE (Photosystem II protein Y n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0JXI6_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 5.770e-12
Identity = 29/37 (78.38%), Postives = 34/37 (91.89%), Query Frame = 0
Query:    1 MDIRLLFVFFPVLAAASWALYNIGRVALQQYKKIANS 37
            MD+RLL VFFPV+ AA+WALYNIGRVALQQ+ KIA+S
Sbjct:    1 MDLRLLLVFFPVVTAATWALYNIGRVALQQFNKIASS 37          
BLAST of mRNA_H-paniculata_contig70260.14975.1 vs. uniprot
Match: A0A8E5XRH9_9PHAE (Photosystem II protein Y n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRH9_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 8.200e-12
Identity = 30/36 (83.33%), Postives = 32/36 (88.89%), Query Frame = 0
Query:    1 MDIRLLFVFFPVLAAASWALYNIGRVALQQYKKIAN 36
            MD RLLFVF PVLAA SWALYNIGRVALQQ+ KIA+
Sbjct:    1 MDARLLFVFLPVLAAGSWALYNIGRVALQQFNKIAS 36          
BLAST of mRNA_H-paniculata_contig70260.14975.1 vs. uniprot
Match: A0A8F0F7Q4_9PHAE (Photosystem II protein Y n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F7Q4_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 1.940e-10
Identity = 29/36 (80.56%), Postives = 31/36 (86.11%), Query Frame = 0
Query:    1 MDIRLLFVFFPVLAAASWALYNIGRVALQQYKKIAN 36
            MDIRLL V  PV AAASWALYNIGRVALQQ+ KIA+
Sbjct:    1 MDIRLLLVLSPVFAAASWALYNIGRVALQQFNKIAS 36          
BLAST of mRNA_H-paniculata_contig70260.14975.1 vs. uniprot
Match: A0A514CPW0_9STRA (Photosystem II protein Y n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A514CPW0_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.760e-10
Identity = 26/37 (70.27%), Postives = 32/37 (86.49%), Query Frame = 0
Query:    1 MDIRLLFVFFPVLAAASWALYNIGRVALQQYKKIANS 37
            MD+RL+FVF PV+ AASWALYNIGR+ALQQ  ++ NS
Sbjct:    1 MDLRLVFVFLPVIVAASWALYNIGRLALQQLARVRNS 37          
BLAST of mRNA_H-paniculata_contig70260.14975.1 vs. uniprot
Match: W0S1X5_PORPP (Photosystem II protein Y n=2 Tax=Porphyridium TaxID=2791 RepID=W0S1X5_PORPP)

HSP 1 Score: 56.6 bits (135), Expect = 5.480e-10
Identity = 27/36 (75.00%), Postives = 31/36 (86.11%), Query Frame = 0
Query:    1 MDIRLLFVFFPVLAAASWALYNIGRVALQQYKKIAN 36
            MD RLL V  PVLAAASWALYNIGRVALQQ+K++ +
Sbjct:    1 MDTRLLIVLLPVLAAASWALYNIGRVALQQFKRLGS 36          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig70260.14975.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6B7EVZ8_9PHAE7.470e-17100.00Photosystem II protein Y n=1 Tax=Cladosiphon okamu... [more]
A0A1I9LW23_9PHAE8.470e-1488.89Photosystem II protein Y n=2 Tax=Ectocarpales TaxI... [more]
A0A8F0FAT3_9PHAE1.200e-1388.89Photosystem II protein Y n=1 Tax=Desmarestia acule... [more]
A0A7T8G5H1_SCYLO1.240e-1388.89Photosystem II protein Y n=5 Tax=Scytosiphonaceae ... [more]
A0A2I4Q2H4_9PHAE2.430e-1383.33Photosystem II protein Y n=27 Tax=Phaeophyceae Tax... [more]
A0A8F0JXI6_9PHAE5.770e-1278.38Photosystem II protein Y n=1 Tax=Protohalopteris s... [more]
A0A8E5XRH9_9PHAE8.200e-1283.33Photosystem II protein Y n=1 Tax=Ishige okamurae T... [more]
A0A8F0F7Q4_9PHAE1.940e-1080.56Photosystem II protein Y n=2 Tax=Laminariales TaxI... [more]
A0A514CPW0_9STRA2.760e-1070.27Photosystem II protein Y n=1 Tax=Rhizochromulina m... [more]
W0S1X5_PORPP5.480e-1075.00Photosystem II protein Y n=2 Tax=Porphyridium TaxI... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009388Photosystem II PsbYPFAMPF06298PsbYcoord: 1..33
e-value: 9.3E-17
score: 60.6
IPR009388Photosystem II PsbYHAMAPMF_00717PSII_PsbYcoord: 2..36
score: 14.735
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..15
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..37
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availableTMHMMTMhelixcoord: 5..24

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig70260contigH-paniculata_contig70260:132..245 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig70260.14975.1mRNA_H-paniculata_contig70260.14975.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig70260 132..245 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig70260.14975.1 ID=prot_H-paniculata_contig70260.14975.1|Name=mRNA_H-paniculata_contig70260.14975.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=38bp
MDIRLLFVFFPVLAAASWALYNIGRVALQQYKKIANS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009388PSII_PsbY