prot_H-paniculata_contig7023.14971.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig7023.14971.1
Unique Nameprot_H-paniculata_contig7023.14971.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length234
Homology
BLAST of mRNA_H-paniculata_contig7023.14971.1 vs. uniprot
Match: I1PQ20_ORYGL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Oryza glaberrima TaxID=4538 RepID=I1PQ20_ORYGL)

HSP 1 Score: 103 bits (258), Expect = 5.590e-22
Identity = 53/127 (41.73%), Postives = 80/127 (62.99%), Query Frame = 0
Query:  111 DEKPKSATEVLKSPEAEKWRAAMEEEWRTLVKNGRWESEDPGRLLVER----KAISTEWNFKRKLKEGGSLPRYKARLVAQGFSQVEGEDFFATSAPVAHMSTLRTVFSLVAEHDFELEGMDVDAAY 233
            D+ PKS +E   SP+A+ W+ A+  E  +++ NG WE       + ER    K +  +W FK+KL+  G++ +YKARLVA+G++Q EGEDFF T +PVA ++T+R + SL A H   +  MDV  A+
Sbjct:  181 DDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWE-------VTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAF 300          
BLAST of mRNA_H-paniculata_contig7023.14971.1 vs. uniprot
Match: Q7XRW0_ORYSJ (OSJNBb0058J09.8 protein n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q7XRW0_ORYSJ)

HSP 1 Score: 104 bits (259), Expect = 6.270e-22
Identity = 54/127 (42.52%), Postives = 80/127 (62.99%), Query Frame = 0
Query:  111 DEKPKSATEVLKSPEAEKWRAAMEEEWRTLVKNGRWESEDPGRLLVER----KAISTEWNFKRKLKEGGSLPRYKARLVAQGFSQVEGEDFFATSAPVAHMSTLRTVFSLVAEHDFELEGMDVDAAY 233
            D+ PKS +E   SP+A+ W+ A+  E  ++V NG WE       + ER    K +  +W FK+KL+  G++ +YKARLVA+G++Q EGEDFF T +PVA ++T+R + SL A H   +  MDV  A+
Sbjct:  669 DDTPKSISEAYASPDADYWKEAVRSEMDSIVANGTWE-------VTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAF 788          
BLAST of mRNA_H-paniculata_contig7023.14971.1 vs. uniprot
Match: I1PI69_ORYGL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Oryza glaberrima TaxID=4538 RepID=I1PI69_ORYGL)

HSP 1 Score: 101 bits (252), Expect = 6.410e-22
Identity = 52/127 (40.94%), Postives = 79/127 (62.20%), Query Frame = 0
Query:  111 DEKPKSATEVLKSPEAEKWRAAMEEEWRTLVKNGRWESEDPGRLLVER----KAISTEWNFKRKLKEGGSLPRYKARLVAQGFSQVEGEDFFATSAPVAHMSTLRTVFSLVAEHDFELEGMDVDAAY 233
            D+ PKS +E   SP+A+ W+ A+  E  +++ NG WE       + ER    K +  +W FK+KL+  G++ +YKARLVA+G++Q EGEDFF T +PVA ++T+R + SL   H   +  MDV  A+
Sbjct:  181 DDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWE-------VTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQNEGEDFFDTYSPVARLTTVRVLLSLATSHGLLVHQMDVKTAF 300          
BLAST of mRNA_H-paniculata_contig7023.14971.1 vs. uniprot
Match: B9GAB8_ORYSJ (Integrase catalytic domain-containing protein n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=B9GAB8_ORYSJ)

HSP 1 Score: 103 bits (258), Expect = 7.350e-22
Identity = 53/127 (41.73%), Postives = 80/127 (62.99%), Query Frame = 0
Query:  111 DEKPKSATEVLKSPEAEKWRAAMEEEWRTLVKNGRWESEDPGRLLVER----KAISTEWNFKRKLKEGGSLPRYKARLVAQGFSQVEGEDFFATSAPVAHMSTLRTVFSLVAEHDFELEGMDVDAAY 233
            D+ PKS +E   SP+A+ W+ A+  E  +++ NG WE       + ER    K +  +W FK+KL+  G++ +YKARLVA+G++Q EGEDFF T +PVA ++T+R + SL A H   +  MDV  A+
Sbjct:  528 DDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWE-------VTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAF 647          
BLAST of mRNA_H-paniculata_contig7023.14971.1 vs. uniprot
Match: Q53NX4_ORYSJ (Retrotransposon protein, putative, Ty1-copia sub-class n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q53NX4_ORYSJ)

HSP 1 Score: 103 bits (258), Expect = 7.500e-22
Identity = 53/127 (41.73%), Postives = 80/127 (62.99%), Query Frame = 0
Query:  111 DEKPKSATEVLKSPEAEKWRAAMEEEWRTLVKNGRWESEDPGRLLVER----KAISTEWNFKRKLKEGGSLPRYKARLVAQGFSQVEGEDFFATSAPVAHMSTLRTVFSLVAEHDFELEGMDVDAAY 233
            D+ PKS +E   SP+A+ W+ A+  E  +++ NG WE       + ER    K +  +W FK+KL+  G++ +YKARLVA+G++Q EGEDFF T +PVA ++T+R + SL A H   +  MDV  A+
Sbjct:  181 DDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWE-------VTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAF 300          
BLAST of mRNA_H-paniculata_contig7023.14971.1 vs. uniprot
Match: Q60E55_ORYSJ (Putative polyprotein n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q60E55_ORYSJ)

HSP 1 Score: 103 bits (258), Expect = 8.260e-22
Identity = 53/127 (41.73%), Postives = 80/127 (62.99%), Query Frame = 0
Query:  111 DEKPKSATEVLKSPEAEKWRAAMEEEWRTLVKNGRWESEDPGRLLVER----KAISTEWNFKRKLKEGGSLPRYKARLVAQGFSQVEGEDFFATSAPVAHMSTLRTVFSLVAEHDFELEGMDVDAAY 233
            D+ PKS +E   SP+A+ W+ A+  E  +++ NG WE       + ER    K +  +W FK+KL+  G++ +YKARLVA+G++Q EGEDFF T +PVA ++T+R + SL A H   +  MDV  A+
Sbjct:  897 DDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWE-------VTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAF 1016          
BLAST of mRNA_H-paniculata_contig7023.14971.1 vs. uniprot
Match: A0A2I4S655_9ORYZ (Retrotransposon protein n=2 Tax=Oryza TaxID=4527 RepID=A0A2I4S655_9ORYZ)

HSP 1 Score: 103 bits (258), Expect = 8.430e-22
Identity = 53/127 (41.73%), Postives = 80/127 (62.99%), Query Frame = 0
Query:  111 DEKPKSATEVLKSPEAEKWRAAMEEEWRTLVKNGRWESEDPGRLLVER----KAISTEWNFKRKLKEGGSLPRYKARLVAQGFSQVEGEDFFATSAPVAHMSTLRTVFSLVAEHDFELEGMDVDAAY 233
            D+ PKS +E   SP+A+ W+ A+  E  +++ NG WE       + ER    K +  +W FK+KL+  G++ +YKARLVA+G++Q EGEDFF T +PVA ++T+R + SL A H   +  MDV  A+
Sbjct:  668 DDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWE-------VTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAF 787          
BLAST of mRNA_H-paniculata_contig7023.14971.1 vs. uniprot
Match: Q65XF0_ORYSJ (Putative polyprotein n=37 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q65XF0_ORYSJ)

HSP 1 Score: 103 bits (258), Expect = 8.620e-22
Identity = 53/127 (41.73%), Postives = 80/127 (62.99%), Query Frame = 0
Query:  111 DEKPKSATEVLKSPEAEKWRAAMEEEWRTLVKNGRWESEDPGRLLVER----KAISTEWNFKRKLKEGGSLPRYKARLVAQGFSQVEGEDFFATSAPVAHMSTLRTVFSLVAEHDFELEGMDVDAAY 233
            D+ PKS +E   SP+A+ W+ A+  E  +++ NG WE       + ER    K +  +W FK+KL+  G++ +YKARLVA+G++Q EGEDFF T +PVA ++T+R + SL A H   +  MDV  A+
Sbjct:  877 DDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWE-------VTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAF 996          
BLAST of mRNA_H-paniculata_contig7023.14971.1 vs. uniprot
Match: Q10CN4_ORYSJ (Retrotransposon protein, putative, unclassified, expressed n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q10CN4_ORYSJ)

HSP 1 Score: 103 bits (258), Expect = 8.670e-22
Identity = 53/127 (41.73%), Postives = 80/127 (62.99%), Query Frame = 0
Query:  111 DEKPKSATEVLKSPEAEKWRAAMEEEWRTLVKNGRWESEDPGRLLVER----KAISTEWNFKRKLKEGGSLPRYKARLVAQGFSQVEGEDFFATSAPVAHMSTLRTVFSLVAEHDFELEGMDVDAAY 233
            D+ PKS +E   SP+A+ W+ A+  E  +++ NG WE       + ER    K +  +W FK+KL+  G++ +YKARLVA+G++Q EGEDFF T +PVA ++T+R + SL A H   +  MDV  A+
Sbjct:  788 DDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWE-------VTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAF 907          
BLAST of mRNA_H-paniculata_contig7023.14971.1 vs. uniprot
Match: Q10JD1_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass n=5 Tax=Oryza TaxID=4527 RepID=Q10JD1_ORYSJ)

HSP 1 Score: 103 bits (258), Expect = 8.710e-22
Identity = 53/127 (41.73%), Postives = 80/127 (62.99%), Query Frame = 0
Query:  111 DEKPKSATEVLKSPEAEKWRAAMEEEWRTLVKNGRWESEDPGRLLVER----KAISTEWNFKRKLKEGGSLPRYKARLVAQGFSQVEGEDFFATSAPVAHMSTLRTVFSLVAEHDFELEGMDVDAAY 233
            D+ PKS +E   SP+A+ W+ A+  E  +++ NG WE       + ER    K +  +W FK+KL+  G++ +YKARLVA+G++Q EGEDFF T +PVA ++T+R + SL A H   +  MDV  A+
Sbjct: 1004 DDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWE-------VTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAF 1123          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7023.14971.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
I1PQ20_ORYGL5.590e-2241.73Reverse transcriptase Ty1/copia-type domain-contai... [more]
Q7XRW0_ORYSJ6.270e-2242.52OSJNBb0058J09.8 protein n=2 Tax=Oryza sativa subsp... [more]
I1PI69_ORYGL6.410e-2240.94Reverse transcriptase Ty1/copia-type domain-contai... [more]
B9GAB8_ORYSJ7.350e-2241.73Integrase catalytic domain-containing protein n=1 ... [more]
Q53NX4_ORYSJ7.500e-2241.73Retrotransposon protein, putative, Ty1-copia sub-c... [more]
Q60E55_ORYSJ8.260e-2241.73Putative polyprotein n=1 Tax=Oryza sativa subsp. j... [more]
A0A2I4S655_9ORYZ8.430e-2241.73Retrotransposon protein n=2 Tax=Oryza TaxID=4527 R... [more]
Q65XF0_ORYSJ8.620e-2241.73Putative polyprotein n=37 Tax=Oryza sativa subsp. ... [more]
Q10CN4_ORYSJ8.670e-2241.73Retrotransposon protein, putative, unclassified, e... [more]
Q10JD1_ORYSJ8.710e-2241.73Retrotransposon protein, putative, Ty1-copia subcl... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 157..233
e-value: 2.8E-16
score: 59.9
NoneNo IPR availablePANTHERPTHR11439:SF265coord: 50..231
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 50..231

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7023contigH-paniculata_contig7023:1474..2252 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7023.14971.1mRNA_H-paniculata_contig7023.14971.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig7023 606..2424 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig7023.14971.1 ID=prot_H-paniculata_contig7023.14971.1|Name=mRNA_H-paniculata_contig7023.14971.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=234bp
MESLFSARSVTPAITRSRARGERGDLINTEKPTSASSAASANPYSALSDD
NSHEDDDDLEVNDAEPEAEDTSSAETCAPTSRGETRIKSGAEERRPRDRG
RHRSPTGTVSDEKPKSATEVLKSPEAEKWRAAMEEEWRTLVKNGRWESED
PGRLLVERKAISTEWNFKRKLKEGGSLPRYKARLVAQGFSQVEGEDFFAT
SAPVAHMSTLRTVFSLVAEHDFELEGMDVDAAY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like