prot_H-paniculata_contig694.14879.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig694.14879.1
Unique Nameprot_H-paniculata_contig694.14879.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length239
Homology
BLAST of mRNA_H-paniculata_contig694.14879.1 vs. uniprot
Match: A0A6H5JM24_9PHAE (RNB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JM24_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 4.350e-27
Identity = 62/110 (56.36%), Postives = 81/110 (73.64%), Query Frame = 0
Query:   56 GNGGRSRGRVYAEYMSEEDARRGLQVGTLFKGKLRINVRRRSTAFVTALGGVLPVDIFLENEKARNRAQEGDLVVVSLHPVTDWVPAKHSSARESSS-IVDALGNLSVAD 164
            G G + R + Y ++M ++D  +GL+ GTL KG LRIN R RSTAFVT  GGVLP DIFLE+EKARNRAQEGDLVVV L PVT+W+  K + AR S+  + +AL ++S+ +
Sbjct:   46 GRGQQRRRKFYQDHMPQKDVEKGLRDGTLLKGNLRINARSRSTAFVTVDGGVLPSDIFLESEKARNRAQEGDLVVVELAPVTEWMALKQAPARSSNEGLAEALESISITE 155          
BLAST of mRNA_H-paniculata_contig694.14879.1 vs. uniprot
Match: A0A5D6XVZ4_9STRA (RNB domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XVZ4_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.070e-11
Identity = 39/105 (37.14%), Postives = 66/105 (62.86%), Query Frame = 0
Query:   57 NGGRSRGRVYAEYMSEEDARRGLQVGTLFKGKLRINVRRRSTAFVTALGGVLPVDIFLENEKARNRAQEGDLVVVSLHPVTDWVPAKHSSARESSSIVDALGNLS 161
            NGG S   VY EY+  +   RGL+ G  F+G+LR+N + R+ A+V   G  +PVD+ ++  + RNRA +GD+V + L P ++W P K S  ++++++  A+ + S
Sbjct:  532 NGG-SHPSVYEEYVERDVVLRGLESGAFFQGRLRVNAKFRTDAYVPVDG--IPVDVLVKGLEDRNRAFDGDVVAIQLRPESEWQPLKASDDKKAAAVAAAVSSPS 633          
BLAST of mRNA_H-paniculata_contig694.14879.1 vs. uniprot
Match: A0A329SEB0_9STRA (DIS3-like exonuclease 2 n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SEB0_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.400e-11
Identity = 39/98 (39.80%), Postives = 58/98 (59.18%), Query Frame = 0
Query:   52 SERRGNGGRSRGRVYAEYMSEEDARRGLQVGTLFKGKLRINVRRRSTAFVTALGGVLPVDIFLENEKARNRAQEGDLVVVSLHPVTDWVPAKHSSARE 149
            S R+ N G S+   Y+EY+  +   RGL  G L +GKLR+N   R   ++T  G  L +D+ ++  + RNRA +GDLV V LHP ++W P  + S R+
Sbjct:  274 SARKDNRGNSQVTTYSEYLDRDVVIRGLDTGGLLQGKLRVNAMYRMDGYITVDG--LSMDVLVKGMQDRNRALDGDLVAVRLHPESEWKPLDNESDRK 369          
BLAST of mRNA_H-paniculata_contig694.14879.1 vs. uniprot
Match: H3H843_PHYRM (RNB domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H843_PHYRM)

HSP 1 Score: 72.4 bits (176), Expect = 5.780e-11
Identity = 35/86 (40.70%), Postives = 52/86 (60.47%), Query Frame = 0
Query:   65 VYAEYMSEEDARRGLQVGTLFKGKLRINVRRRSTAFVTALGGVLPVDIFLENEKARNRAQEGDLVVVSLHPVTDWVPAKHSSARES 150
             Y EY+  E   RGL++G L +GKLR+N   R   ++T  G  L +D+ ++  + RNRA +GDLV V LHP ++W P    + R+S
Sbjct:  264 TYFEYLDREVVLRGLEMGNLLQGKLRVNAMYRMDGYITVDG--LSMDLLVKGMQDRNRALDGDLVAVRLHPESEWKPLNDENERKS 347          
BLAST of mRNA_H-paniculata_contig694.14879.1 vs. uniprot
Match: A0A674CCN8_SALTR (DIS3-like exonuclease 2 n=5 Tax=Salmoninae TaxID=504568 RepID=A0A674CCN8_SALTR)

HSP 1 Score: 72.4 bits (176), Expect = 5.870e-11
Identity = 45/116 (38.79%), Postives = 63/116 (54.31%), Query Frame = 0
Query:   55 RGNGGRSRGRVYAEYMSEEDARRGLQVGTLFKGKLRINVRRRSTAFVTALGGVLPVDIFLENEKARNRAQEGDLVVVSLHPVTDWVPAKHSSARESSSIVDALGNLSVADGKEEIP 170
            RG+ G S+ +V+  YM+ ED   GL+ G L +G +RIN ++   AF+ A  G    DIFL+   ARNRA  GD+VVV + P   W   K SS  E SS  + +       G+ + P
Sbjct:   25 RGSQGGSKKQVFEAYMTTEDVSHGLKRGELIQGSIRINPKKYHEAFIAAPDGKR--DIFLDGTAARNRALNGDVVVVQVLPQEQW---KVSSVEEDSSDSEGVSEPETQSGRSQTP 135          
BLAST of mRNA_H-paniculata_contig694.14879.1 vs. uniprot
Match: A0A421FW06_9STRA (RNB domain-containing protein n=5 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421FW06_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 6.170e-11
Identity = 37/90 (41.11%), Postives = 57/90 (63.33%), Query Frame = 0
Query:   65 VYAEYMSEEDARRGLQVGTLFKGKLRINVRRRSTAFVTALGGVLPVDIFLENEKARNRAQEGDLVVVSLHPVTDWVPAKHSSARESSSIV 154
            VYAEY+  +   +GL++G L +GKLR+N   R   ++T  G  L +D+ ++  + RNR  +GDLVV+ LHP ++W P  + +  ESS IV
Sbjct:  291 VYAEYLDHDVVIKGLEMGGLLQGKLRVNSMYRMDGYITVNG--LAMDVLVKGMEDRNRGLDGDLVVIRLHPESEWKPLNNEN--ESSKIV 376          
BLAST of mRNA_H-paniculata_contig694.14879.1 vs. uniprot
Match: A0A6A3ZFH2_9STRA (RNB domain-containing protein n=14 Tax=Phytophthora TaxID=4783 RepID=A0A6A3ZFH2_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 8.690e-11
Identity = 39/100 (39.00%), Postives = 59/100 (59.00%), Query Frame = 0
Query:   51 SSERRGNGGRSRGRVYAEYMSEEDARRGLQVGTLFKGKLRINVRRRSTAFVTALGGVLPVDIFLENEKARNRAQEGDLVVVSLHPVTDWVPAKHSSARES 150
            S + RGNG  +    Y+EY+  +   RGL++G L +GKLR+N   R   +VT  G  L +D+ ++  + RNRA +GDLV V LHP ++W P    + + S
Sbjct:  396 SKDARGNGQAT----YSEYLDRDVVIRGLEMGGLLQGKLRVNAMYRMDGYVTVDG--LSMDVLVKGMQDRNRAFDGDLVAVRLHPESEWKPMNDENGKRS 489          
BLAST of mRNA_H-paniculata_contig694.14879.1 vs. uniprot
Match: A0A8C6MW17_MUSSI (Rrp44_CSD1 domain-containing protein n=1 Tax=Mus spicilegus TaxID=10103 RepID=A0A8C6MW17_MUSSI)

HSP 1 Score: 64.7 bits (156), Expect = 8.590e-10
Identity = 35/75 (46.67%), Postives = 46/75 (61.33%), Query Frame = 0
Query:   65 VYAEYMSEEDARRGLQVGTLFKGKLRINVRRRSTAFVTALGGVLPVDIFLENEKARNRAQEGDLVVVSLHPVTDW 139
            ++  YMS+ED   GL+ GTL +G LRIN ++   AF+ +  G    DIF++   ARNRA  GDLVVV L P   W
Sbjct:   46 IFETYMSKEDVSEGLKRGTLIQGVLRINPKKFHEAFIPSPDG--DRDIFIDGVVARNRALNGDLVVVKLLPEDQW 118          
BLAST of mRNA_H-paniculata_contig694.14879.1 vs. uniprot
Match: A0A8C6MW19_MUSSI (Rrp44_CSD1 domain-containing protein n=4 Tax=Murinae TaxID=39107 RepID=A0A8C6MW19_MUSSI)

HSP 1 Score: 64.7 bits (156), Expect = 1.060e-9
Identity = 35/75 (46.67%), Postives = 46/75 (61.33%), Query Frame = 0
Query:   65 VYAEYMSEEDARRGLQVGTLFKGKLRINVRRRSTAFVTALGGVLPVDIFLENEKARNRAQEGDLVVVSLHPVTDW 139
            ++  YMS+ED   GL+ GTL +G LRIN ++   AF+ +  G    DIF++   ARNRA  GDLVVV L P   W
Sbjct:   49 IFETYMSKEDVSEGLKRGTLIQGVLRINPKKFHEAFIPSPDG--DRDIFIDGVVARNRALNGDLVVVKLLPEDQW 121          
BLAST of mRNA_H-paniculata_contig694.14879.1 vs. uniprot
Match: A0A8C1MI99_CYPCA (DIS3-like exonuclease 2 n=4 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1MI99_CYPCA)

HSP 1 Score: 68.6 bits (166), Expect = 1.180e-9
Identity = 39/87 (44.83%), Postives = 51/87 (58.62%), Query Frame = 0
Query:   61 SRGRVYAEYMSEEDARRGLQVGTLFKGKLRINVRRRSTAFVTALGGVLPVDIFLENEKARNRAQEGDLVVVSLHPVTDWVPAKHSSA 147
            SR +++ EYM  ED   GL+ G L KG LRIN ++   AFV +  G    DIFL+   ARNRA  GD+VVV + P   W   K +S+
Sbjct:   50 SRKQLFEEYMRTEDVSAGLERGELIKGVLRINPKKYKEAFVPSPDG--SADIFLDGIAARNRALNGDVVVVKVLPPEQWKKGKENSS 134          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig694.14879.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JM24_9PHAE4.350e-2756.36RNB domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A5D6XVZ4_9STRA1.070e-1137.14RNB domain-containing protein n=1 Tax=Pythium bras... [more]
A0A329SEB0_9STRA1.400e-1139.80DIS3-like exonuclease 2 n=2 Tax=Phytophthora TaxID... [more]
H3H843_PHYRM5.780e-1140.70RNB domain-containing protein n=1 Tax=Phytophthora... [more]
A0A674CCN8_SALTR5.870e-1138.79DIS3-like exonuclease 2 n=5 Tax=Salmoninae TaxID=5... [more]
A0A421FW06_9STRA6.170e-1141.11RNB domain-containing protein n=5 Tax=Phytophthora... [more]
A0A6A3ZFH2_9STRA8.690e-1139.00RNB domain-containing protein n=14 Tax=Phytophthor... [more]
A0A8C6MW17_MUSSI8.590e-1046.67Rrp44_CSD1 domain-containing protein n=1 Tax=Mus s... [more]
A0A8C6MW19_MUSSI1.060e-946.67Rrp44_CSD1 domain-containing protein n=4 Tax=Murin... [more]
A0A8C1MI99_CYPCA1.180e-944.83DIS3-like exonuclease 2 n=4 Tax=Cyprinus carpio Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.690coord: 57..162
e-value: 2.3E-17
score: 64.7
NoneNo IPR availablePANTHERPTHR23355:SF9DIS3-LIKE EXONUCLEASE 2coord: 43..186
NoneNo IPR availablePANTHERPTHR23355RIBONUCLEASEcoord: 43..186
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 231..238
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..210
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 211..230
NoneNo IPR availableTMHMMTMhelixcoord: 211..230
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 64..161

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig694contigH-paniculata_contig694:1437..9577 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig694.14879.1mRNA_H-paniculata_contig694.14879.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig694 1353..9664 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig694.14879.1 ID=prot_H-paniculata_contig694.14879.1|Name=mRNA_H-paniculata_contig694.14879.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=239bp
MQRGQGNGRGRHGRGRGGRGNWRRGSPSQAMATSSAEWVQEQYQQPHQHW
SSERRGNGGRSRGRVYAEYMSEEDARRGLQVGTLFKGKLRINVRRRSTAF
VTALGGVLPVDIFLENEKARNRAQEGDLVVVSLHPVTDWVPAKHSSARES
SSIVDALGNLSVADGKEEIPASDAGGHFALCEVAGSKNQKLDVDSTPPIA
KRKIHSVPQSILFCAILCCLVCLVVQTSTFETCFVRPV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold