prot_H-paniculata_contig6924.14860.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig6924.14860.1
Unique Nameprot_H-paniculata_contig6924.14860.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length374
Homology
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BLAST of mRNA_H-paniculata_contig6924.14860.1 vs. uniprot
Match: A0A6H5JDM9_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDM9_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 1.110e-25
Identity = 81/220 (36.82%), Postives = 116/220 (52.73%), Query Frame = 0 
Query:   14 MDNDLVEDDGMRQMRSRRRFNTGLVLILMLFFMDTRTSPPAESRAN-ALQA--SIKTAKKLQDTVRKLEQDL-DNL-PHEEKFRLSKIQNFKGEWTQAKPSSMQTIVPEMVPVPSPKNEDDVKRHQETSGGKVDLPGGSNTPTK-EGQSFDVKMYVTPINTNEWKPAISLVQGVMTLGSEVTQGTPRANFEGLFFHKYGRLSAVAGVVPGEELKVIWDIP 227
            MDN+  +DDG+RQ RSRRRF TGLV+ L+ FFMD RT    + R   A QA  S K  +  + TV +L + L D++ P    + L    N KGEW  +   S +T+VP M    +  +E    +H+      +DL   +  P+  E   F     +  +   +  P +S+V G + +G   T+      FEGLFFHK+G +SAV G   G+ELKV+W  P
Sbjct:    1 MDNEFGDDDGLRQARSRRRFQTGLVIFLLFFFMDARTPQETQDRGKRAAQARTSAKNQEVTRTTVHRLAEGLLDHIVPQGPTYALRSSSNIKGEWRLSDAESFRTVVPAMKA--ADPSEGSGSKHR------LDLRDETIAPSDTETAHFSHSHMMASLVQAKGNPEVSIVHGTLNVGGAATKSGVDTLFEGLFFHKFGHMSAVVGA-SGDELKVVWTPP 211
[Close]
BLAST of mRNA_H-paniculata_contig6924.14860.1 vs. uniprot
Match: D8LPM4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPM4_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 3.880e-24
Identity = 81/219 (36.99%), Postives = 118/219 (53.88%), Query Frame = 0 
Query:   14 MDNDLVEDDGMRQMRSRRRFNTGLVLILMLFFMDTRTSPPAESRAN-ALQA--SIKTAKKLQDTVRKLEQDL-DNL-PHEEKFRLSKIQNFKGEWTQAKPSSMQTIVPEMVPVPSPKNEDDVKRHQETSGGKVDLPGGSNTP--TKEGQSFDVKMYVTPINTNEWKPAISLVQGVMTLGSEVTQGTPRAN-FEGLFFHKYGRLSAVAGVVPGEELKVIW 224
            MDN+  +DDG+RQ RSRRRF TGLV+ L+ FFMD RT    ++R   A QA  S K  +  + TV +L + L D++ P    + L      KGEW  +   S +T+VP M    +  +E    +H+      +DL   +  P  T+   S   +M  + +   +  P +S+V G + +G   T+ +     FEGLFFHKYG +SAV G   G+ELKV+W
Sbjct:    1 MDNEFGDDDGLRQARSRRRFQTGLVIFLLFFFMDARTPQETQNRGKRAAQARTSAKNQEVTRTTVHRLAEGLLDHIVPQGPTYALRSSSEIKGEWRLSDAESFRTVVPAMKA--ADPSEGSGSKHR------LDLRDETIAPSDTETAHSSHSRMMASLVQA-KGNPEVSIVHGTLNVGDAATKSSGVDTLFEGLFFHKYGHMSAVVGA-SGDELKVVW 209
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6924.14860.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JDM9_9PHAE1.110e-2536.82RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LPM4_ECTSI3.880e-2436.99Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 61..88
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 33..50
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 51..374
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..32

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6924contigH-paniculata_contig6924:977..10408 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6924.14860.1mRNA_H-paniculata_contig6924.14860.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig6924 977..10408 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig6924.14860.1 ID=prot_H-paniculata_contig6924.14860.1|Name=mRNA_H-paniculata_contig6924.14860.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=374bp
TRGKGVLTPAVGEMDNDLVEDDGMRQMRSRRRFNTGLVLILMLFFMDTRT
SPPAESRANALQASIKTAKKLQDTVRKLEQDLDNLPHEEKFRLSKIQNFK
GEWTQAKPSSMQTIVPEMVPVPSPKNEDDVKRHQETSGGKVDLPGGSNTP
TKEGQSFDVKMYVTPINTNEWKPAISLVQGVMTLGSEVTQGTPRANFEGL
FFHKYGRLSAVAGVVPGEELKVIWDIPVVGSSGENVNDAADNTTTTNNHS
GAISNQANAAAGAAGSEAAALSPPPLTAPPEPIVGTDDWSDIPDSGSEEA
SGDGAEDEADNYRGRRAKQLQQQWQHRQLLGTGGASAVGNEGKVSDGRAP
AAGVVEGGSGGGGDGWGGWLAKRR
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