prot_H-paniculata_contig6905.14833.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig6905.14833.1
Unique Nameprot_H-paniculata_contig6905.14833.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length603
Homology
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BLAST of mRNA_H-paniculata_contig6905.14833.1 vs. uniprot
Match: D8LKF7_ECTSI (TFIIS central domain-containing protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKF7_ECTSI)

HSP 1 Score: 234 bits (596), Expect = 3.200e-62
Identity = 115/162 (70.99%), Postives = 135/162 (83.33%), Query Frame = 0 
Query:  166 PPPEVQGMSHVAPK-ARGGRSG--DYFAINDPGREPFYVHAYHAGDSQQSANLQGLLPRNLDVDGRVSMMNLNGTLTSRADGSVKVLVLRPGGGGPNNPNVCSRFCADFANYKNEGRAGYCFKQFDKKPVEFLYLVPPALAYQVPLVAQSPHAAGYLACLVV 324
            PPPEV+GM+ VAPK  + GR+   + F IN+PGREPFYVHA+H G  +   +LQG LPRNLDVDGRVSM NLNGT+ SRA GS++VLVLRPGGGGP+NPNV +RFC +FA YKN+GRAGYCFKQFDKK VEFLYLVPPALA QVPL+AQ+P A G+L CLV+
Sbjct: 1476 PPPEVEGMTRVAPKPGKAGRAAKSENFVINEPGREPFYVHAFHGGGPEHCVDLQGRLPRNLDVDGRVSMTNLNGTMKSRAAGSIRVLVLRPGGGGPHNPNVLNRFCQEFAAYKNQGRAGYCFKQFDKKHVEFLYLVPPALAPQVPLLAQNPAAQGHLVCLVI 1637
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6905.14833.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKF7_ECTSI3.200e-6270.99TFIIS central domain-containing protein (Fragment)... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR12433PROSTATE TUMOR OVEREXPRESSED GENE 1 PTOV1coord: 19..538
NoneNo IPR availablePANTHERPTHR12433:SF13coord: 19..538

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6905contigH-paniculata_contig6905:1110..5905 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6905.14833.1mRNA_H-paniculata_contig6905.14833.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig6905 1107..6491 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig6905.14833.1 ID=prot_H-paniculata_contig6905.14833.1|Name=mRNA_H-paniculata_contig6905.14833.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=603bp
MELDEAFGDEDSTGAVGTSNSNSNRNKSNNNSNSSNSSSSSSINSNNNNN
NNNNNNTLMDHDTNNGSTASSSSYSNDNNSRDGPQSFDSDDDMIMEDSLV
LDGEDDDHGDGTSSSSQALQETRFPMDGAAGDVPHASGGGGGGGGSGVGA
GSGAPSAPSGGKQTIPPPEVQGMSHVAPKARGGRSGDYFAINDPGREPFY
VHAYHAGDSQQSANLQGLLPRNLDVDGRVSMMNLNGTLTSRADGSVKVLV
LRPGGGGPNNPNVCSRFCADFANYKNEGRAGYCFKQFDKKPVEFLYLVPP
ALAYQVPLVAQSPHAAGYLACLVVMAQAPGAVPPPLPKYPYPAAQQQAGG
NTATAPPPPPYPQQQQQQHQEQDNPPGPPPRSARTAAQASPQQQAIPLPP
PPPPPPMSMIPPLPQAAAAPPVSVASGAWNAQPQAEQAMPQAEQAMPPVP
DAVAPAQLSSGTSPGVGVGLQPPLSLPPPPPLRAAGFGGTAPPAAPPAQQ
YQQQVQQPQPPLPPLPPPPQIQQQQQQQSPQPQPQHPLVGMVAEQIAAIG
PQQLEAMRRLPDAQAQYPFIFEGHPGFGPFRDVLAGLVMPRFQHGGSGAG
TG*
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