prot_H-paniculata_contig6886.14809.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig6886.14809.1
Unique Nameprot_H-paniculata_contig6886.14809.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length169
Homology
BLAST of mRNA_H-paniculata_contig6886.14809.1 vs. uniprot
Match: D8LMR8_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMR8_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 2.330e-18
Identity = 52/92 (56.52%), Postives = 67/92 (72.83%), Query Frame = 0
Query:    1 MKSVAVLAMFCAGSARAFIPSPIVQGAFSAKAAPAHAASTSSTVMMAKSTALPFMDSPPALDGSAVGDFGFDPLGLTENINIPYGSRGAQAR 92
            MKS AV A +CAG A AF P P V     AK+APA   ++++T + AKS ALPF++SP  LDGS +GDFGFDPLGLTENI+IP+ +R A+ +
Sbjct:    1 MKSFAVFAAWCAGGALAFAPVPKVSS-LGAKSAPAR--NSAATALDAKSKALPFLESPATLDGSMIGDFGFDPLGLTENIDIPF-ARAAEIK 88          
BLAST of mRNA_H-paniculata_contig6886.14809.1 vs. uniprot
Match: A0A7S2UB14_9STRA (Hypothetical protein n=2 Tax=Sar TaxID=2698737 RepID=A0A7S2UB14_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 3.430e-10
Identity = 37/66 (56.06%), Postives = 48/66 (72.73%), Query Frame = 0
Query:   27 AFSAKAAPAHAASTSSTVMMAKSTALPFMDSPPALDGSAVGDFGFDPLGLTENINIPYGSRGAQAR 92
            AF+ KA     A +S+ VMMAKS A+PF+++P  LDGS VGD GFDPL L+ENIN+ Y SR A+ +
Sbjct:   25 AFAGKALTTRRARSSNVVMMAKSAAIPFLEAPDKLDGSMVGDQGFDPLYLSENINLEY-SRAAELK 89          
BLAST of mRNA_H-paniculata_contig6886.14809.1 vs. uniprot
Match: A0A2V3J3F8_9FLOR (Chlorophyll a-b binding protein 7, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3F8_9FLOR)

HSP 1 Score: 58.5 bits (140), Expect = 1.860e-7
Identity = 35/71 (49.30%), Postives = 46/71 (64.79%), Query Frame = 0
Query:   18 FIPSPIVQGAFSAKAAPAHAASTSSTVMMAKSTALPFMDSPPALDGSAVGDFGFDPLGLTENINIPYGSRG 88
            F+P+  V+ AF+  AAP     + STV M  S A+PF+D+PP LDG+ VGD GFDPL L+  IN+ Y   G
Sbjct:    8 FVPAG-VRTAFAGAAAPR--VQSRSTVTMVASKAIPFLDAPPKLDGTLVGDVGFDPLYLSNYINLDYARAG 75          
BLAST of mRNA_H-paniculata_contig6886.14809.1 vs. uniprot
Match: A0A5J4YN76_PORPP (Chlorophyll a-b binding protein 1B-21, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YN76_PORPP)

HSP 1 Score: 56.2 bits (134), Expect = 1.690e-6
Identity = 29/54 (53.70%), Postives = 39/54 (72.22%), Query Frame = 0
Query:   45 MMAKSTALPFMDSPPALDGSAVGDFGFDPLGLTENINIPYGSRGAQARPHCSAC 98
            MMAKS ++PFM++P ALDGS VGD GFDPLG +  I++ +  R A+ + HC  C
Sbjct:   38 MMAKSKSVPFMEAPAALDGSMVGDVGFDPLGFSNYIDLKF-LREAELK-HCRIC 89          
BLAST of mRNA_H-paniculata_contig6886.14809.1 vs. uniprot
Match: A0A5J4ZAY0_PORPP (Chlorophyll a-b binding protein 1B-21, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4ZAY0_PORPP)

HSP 1 Score: 55.5 bits (132), Expect = 2.930e-6
Identity = 33/76 (43.42%), Postives = 44/76 (57.89%), Query Frame = 0
Query:   46 MAKSTALPFMDSPPALDGSAVGDFGFDPLGLTENINIPYGSRGAQARPHCSACRC---GFPAHAV-RTPSGSSVPR 117
            M  S ++PFM++PPALDGS VGD GFDPLG T   ++ +  R A+ + HC  C     GF    + R P  S  P+
Sbjct:   32 MVTSKSMPFMEAPPALDGSMVGDVGFDPLGFTRTFDVKW-MREAELK-HCRICMLAVLGFVVQEIFRLPMYSGAPK 105          
BLAST of mRNA_H-paniculata_contig6886.14809.1 vs. uniprot
Match: A0A5J4YYC4_PORPP (Chlorophyll a-b binding protein, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YYC4_PORPP)

HSP 1 Score: 55.1 bits (131), Expect = 4.250e-6
Identity = 25/40 (62.50%), Postives = 32/40 (80.00%), Query Frame = 0
Query:   45 MMAKSTALPFMDSPPALDGSAVGDFGFDPLGLTENINIPY 84
            MMAKS ++PFMD+PPALDGS  GD GFDPL ++  +NI +
Sbjct:   34 MMAKSKSVPFMDAPPALDGSLAGDVGFDPLNISGFLNIKW 73          
BLAST of mRNA_H-paniculata_contig6886.14809.1 vs. uniprot
Match: A0A7S0BCB3_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BCB3_9RHOD)

HSP 1 Score: 54.3 bits (129), Expect = 7.200e-6
Identity = 28/57 (49.12%), Postives = 38/57 (66.67%), Query Frame = 0
Query:   28 FSAKAAPAHAASTSSTVMMAKSTALPFMDSPPALDGSAVGDFGFDPLGLTENINIPY 84
            F+ +A     A +S TVMMA S ++PF++ P  LDG   GD GFDPL L++NIN+ Y
Sbjct:   14 FAGQAVSVRRARSSGTVMMAMSKSIPFLECPKNLDGRLPGDVGFDPLYLSDNINLQY 70          
BLAST of mRNA_H-paniculata_contig6886.14809.1 vs. uniprot
Match: A0A1X6P5L2_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P5L2_PORUM)

HSP 1 Score: 54.3 bits (129), Expect = 8.070e-6
Identity = 27/50 (54.00%), Postives = 36/50 (72.00%), Query Frame = 0
Query:   46 MAKSTALPFMDSPPALDGSAVGDFGFDPLGLTENINIPYGSRGAQARPHC 95
            M KS A+PFM++PPALDGS +GD GFDP G T  I++ +  R A+ + HC
Sbjct:   37 MVKSKAIPFMEAPPALDGSMIGDVGFDPFGFTNYIDLKF-LREAEIK-HC 84          
BLAST of mRNA_H-paniculata_contig6886.14809.1 vs. uniprot
Match: J9V789_NEOYE (Light-harvesting protein n=1 Tax=Neopyropia yezoensis TaxID=2788 RepID=J9V789_NEOYE)

HSP 1 Score: 54.3 bits (129), Expect = 8.230e-6
Identity = 27/50 (54.00%), Postives = 37/50 (74.00%), Query Frame = 0
Query:   46 MAKSTALPFMDSPPALDGSAVGDFGFDPLGLTENINIPYGSRGAQARPHC 95
            M KS A+PFM++PPALDGS +GD GFDPLG +  I++ +  R A+ + HC
Sbjct:   38 MVKSKAIPFMEAPPALDGSMIGDVGFDPLGFSNYIDLKF-LREAEIK-HC 85          
BLAST of mRNA_H-paniculata_contig6886.14809.1 vs. uniprot
Match: A0A7S2ZRV9_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZRV9_9RHOD)

HSP 1 Score: 52.4 bits (124), Expect = 1.040e-5
Identity = 34/82 (41.46%), Postives = 48/82 (58.54%), Query Frame = 0
Query:   18 FIPSPIVQGAFS-AKAAPAHAASTSSTVMMAKSTALPFMDSPPALDGSAVGDFGFDPLGLTENINIPYGSRGAQARPHCSAC 98
            F PS + +  F+ A+ + A   S +   M AKS ++PFMD P ALDGS VGD GFDPL  +  + + +  R A+ + HC  C
Sbjct:    8 FAPSRLTRTTFAGARLSGAPVRSAARVTMQAKSKSVPFMDCPKALDGSMVGDVGFDPLNFSAYLPLSW-LREAEIK-HCRLC 87          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6886.14809.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D8LMR8_ECTSI2.330e-1856.52Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
A0A7S2UB14_9STRA3.430e-1056.06Hypothetical protein n=2 Tax=Sar TaxID=2698737 Rep... [more]
A0A2V3J3F8_9FLOR1.860e-749.30Chlorophyll a-b binding protein 7, chloroplastic n... [more]
A0A5J4YN76_PORPP1.690e-653.70Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
A0A5J4ZAY0_PORPP2.930e-643.42Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
A0A5J4YYC4_PORPP4.250e-662.50Chlorophyll a-b binding protein, chloroplastic n=1... [more]
A0A7S0BCB3_9RHOD7.200e-649.12Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A1X6P5L2_PORUM8.070e-654.00Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
J9V789_NEOYE8.230e-654.00Light-harvesting protein n=1 Tax=Neopyropia yezoen... [more]
A0A7S2ZRV9_9RHOD1.040e-541.46Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023329Chlorophyll a/b binding domain superfamilyGENE3D1.10.3460.10coord: 45..85
e-value: 3.1E-5
score: 25.5
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 18..168
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..12
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 13..17
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..17
score: 0.532
NoneNo IPR availableSUPERFAMILY103511Chlorophyll a-b binding proteincoord: 41..80

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6886contigH-paniculata_contig6886:2219..8225 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6886.14809.1mRNA_H-paniculata_contig6886.14809.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig6886 530..8260 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig6886.14809.1 ID=prot_H-paniculata_contig6886.14809.1|Name=mRNA_H-paniculata_contig6886.14809.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=169bp
MKSVAVLAMFCAGSARAFIPSPIVQGAFSAKAAPAHAASTSSTVMMAKST
ALPFMDSPPALDGSAVGDFGFDPLGLTENINIPYGSRGAQARPHCSACRC
GFPAHAVRTPSGSSVPRGAARGAHHRATCCARSSVLIHRGVRICVDLPDF
RYLNGPVGDAPPGPQRSF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR023329Chlorophyll_a/b-bd_dom_sf