prot_H-paniculata_contig68827.14806.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig68827.14806.1
Unique Nameprot_H-paniculata_contig68827.14806.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length184
Homology
BLAST of mRNA_H-paniculata_contig68827.14806.1 vs. uniprot
Match: D1J731_ECTSI (DNA-directed RNA polymerase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J731_ECTSI)

HSP 1 Score: 362 bits (928), Expect = 1.050e-123
Identity = 180/184 (97.83%), Postives = 184/184 (100.00%), Query Frame = 0
Query:    1 MQNISKCKCVDSDLLSPSEVYGHFVFTSLEQSEGSTIGNMLRRVLLSNLYGLKITGVRLPDVTHNEFNLLDGVREDFLEVILNLKEIILKDENKYGQSYHGLLKIQGPAVVTAGAIRFSKGIKVLNPNNYLLTISDDSFVEIHLKLEHGKAYVLAKDQKLEGSTYFLPIDSNFAPVLKVNSYVK 184
            MQN+SKCKCVDSDLLSPSE+YGHFVFTSLEQSEGSTIGNMLRRVLLSNLYGLKITGVRLPDVTHNEFNLLDGVREDFLEVILNLKEIILKDENKYGQSYHGLLKIQGPAVVTAG+I+FSKGIKVLNPNNYLLTISDDSFVEIHLKLEHGKAYVLAKDQKLEGSTYFLPIDSNFAPVLKVNSYVK
Sbjct:    1 MQNMSKCKCVDSDLLSPSELYGHFVFTSLEQSEGSTIGNMLRRVLLSNLYGLKITGVRLPDVTHNEFNLLDGVREDFLEVILNLKEIILKDENKYGQSYHGLLKIQGPAVVTAGSIKFSKGIKVLNPNNYLLTISDDSFVEIHLKLEHGKAYVLAKDQKLEGSTYFLPIDSNFAPVLKVNSYVK 184          
BLAST of mRNA_H-paniculata_contig68827.14806.1 vs. uniprot
Match: A0A7T8G5C9_SCYLO (DNA-directed RNA polymerase n=5 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A7T8G5C9_SCYLO)

HSP 1 Score: 352 bits (902), Expect = 2.440e-119
Identity = 174/184 (94.57%), Postives = 181/184 (98.37%), Query Frame = 0
Query:    1 MQNISKCKCVDSDLLSPSEVYGHFVFTSLEQSEGSTIGNMLRRVLLSNLYGLKITGVRLPDVTHNEFNLLDGVREDFLEVILNLKEIILKDENKYGQSYHGLLKIQGPAVVTAGAIRFSKGIKVLNPNNYLLTISDDSFVEIHLKLEHGKAYVLAKDQKLEGSTYFLPIDSNFAPVLKVNSYVK 184
            MQNISKCKCVDSDLLSPSE YGHFVFTSLEQSEGSTIGNMLRRVLLSNLYGLKITGVRLPDVTHNEFNLLDGVREDFLE++LNLKEII KD+NK+GQSYHGLLKIQGPAVVTAGAI+FSKGIKVLNPNNYLLTISD+S VEIHLKLEHGKAYVLAKDQKLEGSTYFLPIDSNFAPV+KVNSYVK
Sbjct:    8 MQNISKCKCVDSDLLSPSEHYGHFVFTSLEQSEGSTIGNMLRRVLLSNLYGLKITGVRLPDVTHNEFNLLDGVREDFLEIMLNLKEIIFKDDNKFGQSYHGLLKIQGPAVVTAGAIKFSKGIKVLNPNNYLLTISDESLVEIHLKLEHGKAYVLAKDQKLEGSTYFLPIDSNFAPVVKVNSYVK 191          
BLAST of mRNA_H-paniculata_contig68827.14806.1 vs. uniprot
Match: A0A6B7EYI8_9PHAE (DNA-directed RNA polymerase n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EYI8_9PHAE)

HSP 1 Score: 345 bits (884), Expect = 7.310e-117
Identity = 171/184 (92.93%), Postives = 179/184 (97.28%), Query Frame = 0
Query:    1 MQNISKCKCVDSDLLSPSEVYGHFVFTSLEQSEGSTIGNMLRRVLLSNLYGLKITGVRLPDVTHNEFNLLDGVREDFLEVILNLKEIILKDENKYGQSYHGLLKIQGPAVVTAGAIRFSKGIKVLNPNNYLLTISDDSFVEIHLKLEHGKAYVLAKDQKLEGSTYFLPIDSNFAPVLKVNSYVK 184
            MQNISKCKCVDSDLLSPSE+YGHFVFTSLEQSEGSTIGNMLRRVLLSNLYGLKITGVRLPD THNEFNLL+GVREDFLE++LNLKEIILKD+N+ GQSYHGLLKIQGPAVVTA AI FSKGIKVLNPNNYLLTISD+SFVEIHLKLEHGKAYVLAKDQKLEGS YFLPIDSNFAPV+KVNSYVK
Sbjct:    1 MQNISKCKCVDSDLLSPSELYGHFVFTSLEQSEGSTIGNMLRRVLLSNLYGLKITGVRLPDATHNEFNLLNGVREDFLEIMLNLKEIILKDDNQIGQSYHGLLKIQGPAVVTASAITFSKGIKVLNPNNYLLTISDNSFVEIHLKLEHGKAYVLAKDQKLEGSKYFLPIDSNFAPVIKVNSYVK 184          
BLAST of mRNA_H-paniculata_contig68827.14806.1 vs. uniprot
Match: A0A1I9LVR4_9PHAE (DNA-directed RNA polymerase n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVR4_9PHAE)

HSP 1 Score: 308 bits (788), Expect = 2.540e-102
Identity = 151/186 (81.18%), Postives = 171/186 (91.94%), Query Frame = 0
Query:    1 MQNISKC--KCVDSDLLSPSEVYGHFVFTSLEQSEGSTIGNMLRRVLLSNLYGLKITGVRLPDVTHNEFNLLDGVREDFLEVILNLKEIILKDENKYGQSYHGLLKIQGPAVVTAGAIRFSKGIKVLNPNNYLLTISDDSFVEIHLKLEHGKAYVLAKDQKLEGSTYFLPIDSNFAPVLKVNSYVK 184
            M+N+SKC  KCVDSDLLSP+E+YGHFVFTSLE+SEGSTIG+MLRRVLLSNLYGLKITG+R+P++THNEFNL++G+RED LEVILNLKE+I KD NKY QSYHGL+ IQGPAVVTAG I+FS+GI+VLNP  YLLTISD S VEIHLK+E+GKAYVLA DQKLEGSTYF PIDSNFAPVLKVN YVK
Sbjct:    1 MKNLSKCTCKCVDSDLLSPNELYGHFVFTSLEESEGSTIGSMLRRVLLSNLYGLKITGLRIPNMTHNEFNLVEGIREDLLEVILNLKEVIFKDNNKYDQSYHGLVYIQGPAVVTAGCIKFSEGIEVLNPGQYLLTISDKSVVEIHLKIEYGKAYVLATDQKLEGSTYFFPIDSNFAPVLKVNFYVK 186          
BLAST of mRNA_H-paniculata_contig68827.14806.1 vs. uniprot
Match: A0A8F0F9Z1_9PHAE (DNA-directed RNA polymerase n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0F9Z1_9PHAE)

HSP 1 Score: 267 bits (683), Expect = 3.680e-85
Identity = 130/184 (70.65%), Postives = 158/184 (85.87%), Query Frame = 0
Query:    1 MQNISKCKCVDSDLLSPSEVYGHFVFTSLEQSEGSTIGNMLRRVLLSNLYGLKITGVRLPDVTHNEFNLLDGVREDFLEVILNLKEIILKDENKYGQSYHGLLKIQGPAVVTAGAIRFSKGIKVLNPNNYLLTISDDSFVEIHLKLEHGKAYVLAKDQKLEGSTYFLPIDSNFAPVLKVNSYVK 184
            M+  SKCKCVD DL + +E YGHFVFTSLEQSEG+TIGNMLRR LLSNLYG +ITGVR+P + +NEF+ L+GVRED LE+ILNLK+II+ D N  G+S +GLLK QGPA++TAGA+    G+KVLNPNN+LLTISDDS VE+ +K+E+GK+Y+LAKDQKLEGS  F+PIDSNFAPV+KVNSYVK
Sbjct:    1 MKIYSKCKCVDLDLFNSNEFYGHFVFTSLEQSEGNTIGNMLRRTLLSNLYGFRITGVRVPGI-NNEFSSLEGVREDLLEIILNLKQIIISDPNNVGESCYGLLKTQGPAIITAGALTLPHGMKVLNPNNHLLTISDDSLVELEVKIEYGKSYILAKDQKLEGSPDFIPIDSNFAPVVKVNSYVK 183          
BLAST of mRNA_H-paniculata_contig68827.14806.1 vs. uniprot
Match: A0A8F0F6V4_AKKLU (DNA-directed RNA polymerase n=1 Tax=Akkesiphycus lubricus TaxID=3022 RepID=A0A8F0F6V4_AKKLU)

HSP 1 Score: 261 bits (667), Expect = 7.020e-84
Identity = 127/180 (70.56%), Postives = 155/180 (86.11%), Query Frame = 0
Query:    5 SKCKCVDSDLLSPSEVYGHFVFTSLEQSEGSTIGNMLRRVLLSNLYGLKITGVRLPDVTHNEFNLLDGVREDFLEVILNLKEIILKDENKYGQSYHGLLKIQGPAVVTAGAIRFSKGIKVLNPNNYLLTISDDSFVEIHLKLEHGKAYVLAKDQKLEGSTYFLPIDSNFAPVLKVNSYVK 184
            SKCKCVD DLL+ +E YGHFVFTSLEQSEG+TIGNMLRR LLSNLYG +ITGV +  + +NEF  L+GVRED LE+ILNLKEII+ D+NK GQ+  GLLK+QGPA++TAGA+    GIKVLNP+ +LLTISDDS +E+ +K+E+GK+Y+LAKDQKLEG+  F+PIDSNFAPVLKVNSY+K
Sbjct:    5 SKCKCVDLDLLNRNEFYGHFVFTSLEQSEGTTIGNMLRRALLSNLYGFRITGVLVAGI-NNEFTPLEGVREDLLEIILNLKEIIIYDQNKTGQACFGLLKVQGPAIITAGALTLPNGIKVLNPSTHLLTISDDSVIELEIKIEYGKSYILAKDQKLEGAKDFIPIDSNFAPVLKVNSYIK 183          
BLAST of mRNA_H-paniculata_contig68827.14806.1 vs. uniprot
Match: A0A8F0F859_9PHAE (DNA-directed RNA polymerase n=1 Tax=Pseudochorda nagaii TaxID=74379 RepID=A0A8F0F859_9PHAE)

HSP 1 Score: 261 bits (667), Expect = 7.450e-84
Identity = 127/180 (70.56%), Postives = 155/180 (86.11%), Query Frame = 0
Query:    5 SKCKCVDSDLLSPSEVYGHFVFTSLEQSEGSTIGNMLRRVLLSNLYGLKITGVRLPDVTHNEFNLLDGVREDFLEVILNLKEIILKDENKYGQSYHGLLKIQGPAVVTAGAIRFSKGIKVLNPNNYLLTISDDSFVEIHLKLEHGKAYVLAKDQKLEGSTYFLPIDSNFAPVLKVNSYVK 184
            SKCKCVD DLL+ +E YGHFVFTSLEQSEG+TIGNMLRR LLSNLYG +ITGV +  + +NEF  L+GVRED LE+ILNLKEII+ D+NK GQ+  GLLK+QGPA++TAGA+    GIKVLNP+ +LLTISDDS +E+ +K+E+GK+Y+LAKDQKLEG+  F+PIDSNFAPVLKVNSY+K
Sbjct:    5 SKCKCVDLDLLNRNEFYGHFVFTSLEQSEGTTIGNMLRRALLSNLYGFRITGVLVAGI-NNEFTPLEGVREDLLEIILNLKEIIIYDQNKTGQACFGLLKVQGPAIITAGALTLPNGIKVLNPSTHLLTISDDSVIELEIKIEYGKSYILAKDQKLEGAKDFIPIDSNFAPVLKVNSYIK 183          
BLAST of mRNA_H-paniculata_contig68827.14806.1 vs. uniprot
Match: A0A0R6MAW0_UNDPI (DNA-directed RNA polymerase n=28 Tax=Laminariales TaxID=2886 RepID=A0A0R6MAW0_UNDPI)

HSP 1 Score: 259 bits (662), Expect = 4.000e-83
Identity = 126/180 (70.00%), Postives = 155/180 (86.11%), Query Frame = 0
Query:    5 SKCKCVDSDLLSPSEVYGHFVFTSLEQSEGSTIGNMLRRVLLSNLYGLKITGVRLPDVTHNEFNLLDGVREDFLEVILNLKEIILKDENKYGQSYHGLLKIQGPAVVTAGAIRFSKGIKVLNPNNYLLTISDDSFVEIHLKLEHGKAYVLAKDQKLEGSTYFLPIDSNFAPVLKVNSYVK 184
            SKCKCVD DLL+ +E YGHFVFTSLEQSEG+TIGNMLRR LLSNLYG +ITGVR+  + +NEF  L+GVRED LE+ILNLKEII+ D+N  GQ+ +GLLK QGPA++TAGAI    GIKVLNP+ +LLTISD+S +E+ +K+E+GK+Y+LAK+QKLEG+  F+PIDSNFAPVLKVNSY+K
Sbjct:    5 SKCKCVDLDLLNHNEFYGHFVFTSLEQSEGTTIGNMLRRALLSNLYGFRITGVRVAGI-NNEFTPLEGVREDLLEIILNLKEIIIYDQNNTGQACYGLLKAQGPAIITAGAITLPNGIKVLNPSTHLLTISDESIIELSIKIEYGKSYILAKNQKLEGAADFIPIDSNFAPVLKVNSYIK 183          
BLAST of mRNA_H-paniculata_contig68827.14806.1 vs. uniprot
Match: Q9BAC8_FUCVE (DNA-directed RNA polymerase (Fragment) n=1 Tax=Fucus vesiculosus TaxID=49266 RepID=Q9BAC8_FUCVE)

HSP 1 Score: 239 bits (611), Expect = 1.770e-77
Identity = 114/179 (63.69%), Postives = 148/179 (82.68%), Query Frame = 0
Query:    5 SKCKCVDSDLLSPSEVYGHFVFTSLEQSEGSTIGNMLRRVLLSNLYGLKITGVRLPDVTHNEFNLLDGVREDFLEVILNLKEIILKDENKYGQSYHGLLKIQGPAVVTAGAIRFSKGIKVLNPNNYLLTISDDSFVEIHLKLEHGKAYVLAKDQKLEGSTYFLPIDSNFAPVLKVNSYV 183
            SKCKCVD DLL+ +E YGHFVFT+L++S+G+TIGN+LRR LLSNLYG +I GVR   + +NEF LL+GVRED  E+ILNLKEII+ + N+  Q+ +G LK+ GPAV+TAG++     +K+LNPNN+LLTISD+S +EI +K+E GK+Y+LAKDQKLEG+  F+PIDSNFAPVLKVN Y+
Sbjct:    5 SKCKCVDLDLLNTNEFYGHFVFTALKKSQGNTIGNVLRRTLLSNLYGFRIVGVRFAGI-NNEFALLEGVREDLFEIILNLKEIIILNSNRIDQTCYGRLKVYGPAVITAGSLELPNNVKILNPNNHLLTISDESLIEIEVKIEAGKSYILAKDQKLEGALDFIPIDSNFAPVLKVNWYI 182          
BLAST of mRNA_H-paniculata_contig68827.14806.1 vs. uniprot
Match: A0A8F0FAY9_9PHAE (DNA-directed RNA polymerase n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAY9_9PHAE)

HSP 1 Score: 244 bits (623), Expect = 2.600e-77
Identity = 120/184 (65.22%), Postives = 151/184 (82.07%), Query Frame = 0
Query:    1 MQNISKCKCVDSDLLSPSEVYGHFVFTSLEQSEGSTIGNMLRRVLLSNLYGLKITGVRLPDVTHNEFNLLDGVREDFLEVILNLKEIILKDENKYGQSYHGLLKIQGPAVVTAGAIRFSKGIKVLNPNNYLLTISDDSFVEIHLKLEHGKAYVLAKDQKLEGSTYFLPIDSNFAPVLKVNSYVK 184
            MQ  S+CKCVD D+L+P+E YGHFVFTSLE+SEG+TIGNMLRR LLSNLYG +I GVR+  + +NEF  + GVRED LE+ILNLKEII+ +E K  QS  G LK+QGPA+VTAG++   K + +LNP+++LLTISDDS +E+ +K+E GK+Y+LAKDQKLEGS  F+PIDSNFAPVLK N Y+K
Sbjct:    1 MQITSRCKCVDLDVLNPNEFYGHFVFTSLEKSEGATIGNMLRRTLLSNLYGFRIVGVRICGI-NNEFTPMPGVREDLLEIILNLKEIIILNEAKTDQSCFGRLKVQGPAIVTAGSLLLPKDVHILNPSSHLLTISDDSIIELEVKIESGKSYILAKDQKLEGSKDFIPIDSNFAPVLKANWYLK 183          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig68827.14806.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D1J731_ECTSI1.050e-12397.83DNA-directed RNA polymerase n=2 Tax=Ectocarpus sil... [more]
A0A7T8G5C9_SCYLO2.440e-11994.57DNA-directed RNA polymerase n=5 Tax=Scytosiphonace... [more]
A0A6B7EYI8_9PHAE7.310e-11792.93DNA-directed RNA polymerase n=1 Tax=Cladosiphon ok... [more]
A0A1I9LVR4_9PHAE2.540e-10281.18DNA-directed RNA polymerase n=1 Tax=Pleurocladia l... [more]
A0A8F0F9Z1_9PHAE3.680e-8570.65DNA-directed RNA polymerase n=1 Tax=Chorda asiatic... [more]
A0A8F0F6V4_AKKLU7.020e-8470.56DNA-directed RNA polymerase n=1 Tax=Akkesiphycus l... [more]
A0A8F0F859_9PHAE7.450e-8470.56DNA-directed RNA polymerase n=1 Tax=Pseudochorda n... [more]
A0A0R6MAW0_UNDPI4.000e-8370.00DNA-directed RNA polymerase n=28 Tax=Laminariales ... [more]
Q9BAC8_FUCVE1.770e-7763.69DNA-directed RNA polymerase (Fragment) n=1 Tax=Fuc... [more]
A0A8F0FAY9_9PHAE2.600e-7765.22DNA-directed RNA polymerase n=1 Tax=Desmarestia ac... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011263DNA-directed RNA polymerase, RpoA/D/Rpb3-typeSMARTSM00662rpoldneu2coord: 21..184
e-value: 6.0E-5
score: -13.2
IPR011263DNA-directed RNA polymerase, RpoA/D/Rpb3-typePFAMPF01193RNA_pol_Lcoord: 29..160
e-value: 7.9E-7
score: 28.8
IPR011262DNA-directed RNA polymerase, insert domainPFAMPF01000RNA_pol_A_baccoord: 62..156
e-value: 2.6E-12
score: 47.1
IPR036603RNA polymerase, RBP11-like subunitGENE3D3.30.1360.10coord: 18..183
e-value: 3.1E-39
score: 136.5
IPR036603RNA polymerase, RBP11-like subunitSUPERFAMILY55257RBP11-like subunits of RNA polymerasecoord: 6..180
IPR036643DNA-directed RNA polymerase, insert domain superfamilyGENE3D2.170.120.12coord: 51..173
e-value: 3.1E-39
score: 136.5
IPR036643DNA-directed RNA polymerase, insert domain superfamilySUPERFAMILY56553Insert subdomain of RNA polymerase alpha subunitcoord: 51..173
NoneNo IPR availablePANTHERPTHR32108:SF0DNA-DIRECTED RNA POLYMERASE SUBUNIT ALPHAcoord: 5..183
NoneNo IPR availablePANTHERPTHR32108FAMILY NOT NAMEDcoord: 5..183

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig68827contigH-paniculata_contig68827:179..730 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig68827.14806.1mRNA_H-paniculata_contig68827.14806.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig68827 179..730 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig68827.14806.1 ID=prot_H-paniculata_contig68827.14806.1|Name=mRNA_H-paniculata_contig68827.14806.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=184bp
MQNISKCKCVDSDLLSPSEVYGHFVFTSLEQSEGSTIGNMLRRVLLSNLY
GLKITGVRLPDVTHNEFNLLDGVREDFLEVILNLKEIILKDENKYGQSYH
GLLKIQGPAVVTAGAIRFSKGIKVLNPNNYLLTISDDSFVEIHLKLEHGK
AYVLAKDQKLEGSTYFLPIDSNFAPVLKVNSYVK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011263DNA-dir_RNA_pol_RpoA/D/Rpb3
IPR011262DNA-dir_RNA_pol_insert
IPR036603RBP11-like
IPR036643RNApol_insert_sf