prot_H-paniculata_contig6812.14730.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig6812.14730.1
Unique Nameprot_H-paniculata_contig6812.14730.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length215
Homology
BLAST of mRNA_H-paniculata_contig6812.14730.1 vs. uniprot
Match: D7G211_ECTSI (RING-type E3 ubiquitin transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G211_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 2.970e-37
Identity = 80/167 (47.90%), Postives = 104/167 (62.28%), Query Frame = 0
Query:   38 CTFFARGKCKYGESCRFSHEITQSRQPRSRGAGAEESKEDTDCGHYEGGDXXXXXXXXXXMEWDQETQWAAKEAALDEEERLQSRRAECGVCLEKV----KAKSR-FGILMGCKHVYCLNCIREWREKSNDKECPQCRVPSNFVLPSLKLVTDPARKERLLLEYKHS 199
            C FFARG+C+YG+ CRFSH+  +  +  + G GA            +              E   E + AA+EAALDE E++QSR AECG+CLEKV    K K R FGIL+ C+HVYCL CIREWR+KS++  CP+C + S+ V+PS  LVTDP RK+RL LE + S
Sbjct:  311 CVFFARGRCRYGDRCRFSHDAVE--ETPAAGGGARXXXXXXXXAGRKEKRGVASEPSSHESEGFGEDEVAAREAALDEAEKIQSRSAECGICLEKVRKLGKVKDRVFGILVSCRHVYCLGCIREWRDKSDNHACPECGLTSSLVIPSKTLVTDPDRKKRLALELRQS 475          
BLAST of mRNA_H-paniculata_contig6812.14730.1 vs. uniprot
Match: A0A6H5L7F8_9PHAE (RING-type E3 ubiquitin transferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F8_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 1.120e-35
Identity = 82/174 (47.13%), Postives = 103/174 (59.20%), Query Frame = 0
Query:   38 CTFFARGKCKYGESCRFSHEITQSRQPRSRGAGAEESKEDTDCGHYEGGDXXXXXXXXXXMEWDQ-------ETQWAAKEAALDEEERLQSRRAECGVCLEKV----KAKSR-FGILMGCKHVYCLNCIREWREKSNDKECPQCRVPSNFVLPSLKLVTDPARKERLLLEYKHS 199
            C FFARG+C+YG+ CRFSH+  +  +  + GAG E        G   GG            E          E + AA+EAALDE ER+QSR AECG+CL KV    K K R FGIL+ CKH+YCL CI+EWR+KSN+  CP+C + S+  LPS   VTD  RK+RL LE + S
Sbjct:  307 CVFFARGRCRYGDRCRFSHDAVE--ETPAAGAGGERGSH----GGRGGGSVGRKEKRGVASEPSSHASEGFGEDEVAAREAALDEAERIQSRSAECGICLGKVRKLGKVKDRVFGILVSCKHIYCLGCIQEWRDKSNNHACPECGLSSSLALPSKTFVTDLDRKKRLALELRQS 474          
BLAST of mRNA_H-paniculata_contig6812.14730.1 vs. uniprot
Match: X6NP21_RETFI (RING-type E3 ubiquitin transferase n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6NP21_RETFI)

HSP 1 Score: 106 bits (264), Expect = 5.680e-23
Identity = 68/188 (36.17%), Postives = 91/188 (48.40%), Query Frame = 0
Query:   38 CTFFARGKCKYGESCRFSHEITQSRQPRSRGAGAEESKEDTD-CGHYEGGDXXXXXXXXXXMEWDQETQWAAKEAALDEEERLQSRRAECGVCLEKVKAK----------SRFGILMGCKHVYCLNCIREWREK-SNDKE----CPQCRVPSNFVLPSLKLVTDPARKERLLLEYKHSLAKMPRQRFQ 209
            C FF  G CKYG++C   H                   E+TD C H +              +W        KE     +ER +S  A CG+C E +  K           RFGIL GC H +CLNC+REWR   S  KE    CP CR  S F++PS +L++DP RK++L+ +YK SLA++P + FQ
Sbjct:  171 CPFFVSGACKYGQACMLWHCFD----------------ENTDTCPHCQ----RVIGHSIAAQQWHMLQPQQCKELDCIHKERRESMDAVCGICHENIARKYESQGHKDNAGRFGILTGCNHTFCLNCLREWRGSISQSKEAIRGCPICREISYFIIPSDRLISDPTRKQQLIQKYKQSLAQIPCKHFQ 338          
BLAST of mRNA_H-paniculata_contig6812.14730.1 vs. uniprot
Match: A0A835Z5J0_9STRA (RING-type E3 ubiquitin transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5J0_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.910e-22
Identity = 50/102 (49.02%), Postives = 69/102 (67.65%), Query Frame = 0
Query:  112 ALDEEERLQSRRAECGVCLEKVKAKSRFGILMGCKHVYCLNCIREWR-----EKSNDKECPQCRVPSNFVLPSLKLVTDPARKERLLLEYKHSLAKMPRQRF 208
            AL+ EER +S RAECG+C + V+   RFG+L GC H +CL CIR WR     E++  + CP CR PS+F++PS +LV  PARK  L+  YK +LA++P + F
Sbjct:  278 ALEAEERERSARAECGICYDPVQG--RFGVLTGCDHAFCLECIRNWRAVGVREQAAVRACPLCRAPSHFIVPSARLVAHPARKAALVERYKETLARIPCRHF 377          
BLAST of mRNA_H-paniculata_contig6812.14730.1 vs. uniprot
Match: A0A024G2Q9_9STRA (RING-type E3 ubiquitin transferase n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G2Q9_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 3.900e-20
Identity = 47/105 (44.76%), Postives = 69/105 (65.71%), Query Frame = 0
Query:  110 EAALDEEERLQSRRAECGVCLEKVKAK-SRFGILMGCKHVYCLNCIREWRE-----KSNDKECPQCRVPSNFVLPSLKLVTDPARKERLLLEYKHSLAKMPRQRF 208
            E  L EEE   S  AEC +C E++ AK  RFG+L GC HV+CL+CIR WR+     K N ++CP CRV + +++PS ++VT+P RK+ L   +K +L+ +P + F
Sbjct:  222 EHQLMEEELKASAEAECNICYEQILAKHERFGLLSGCDHVFCLSCIRNWRDHSDQPKQNIRQCPVCRVETAYIIPSSRMVTNPERKQALQDNFKQNLSSIPCRHF 326          
BLAST of mRNA_H-paniculata_contig6812.14730.1 vs. uniprot
Match: A0A3R7GYF0_9STRA (RING-type E3 ubiquitin transferase n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7GYF0_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.340e-18
Identity = 47/103 (45.63%), Postives = 68/103 (66.02%), Query Frame = 0
Query:  112 ALDEEERLQSRRAECGVCLEKVKAKS-RFGILMGCKHVYCLNCIREWR-----EKSNDKECPQCRVPSNFVLPSLKLVTDPARKERLLLEYKHSLAKMPRQRF 208
            ++ EE RL S+  ECG+C E V AK  RFG+L GC H +CL C+R WR      K   ++CP CRV +NF++PS ++VT P RK+ L+ EY+ +L+ +P + F
Sbjct:  265 SMGEEIRL-SQDLECGICYENVVAKGERFGLLSGCNHSFCLTCLRNWRGIADQPKQTVRQCPVCRVETNFIIPSGRMVTKPERKKVLIDEYRKNLSGIPCRHF 366          
BLAST of mRNA_H-paniculata_contig6812.14730.1 vs. uniprot
Match: A0A6A3LV75_9STRA (RING-type E3 ubiquitin transferase n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3LV75_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.440e-18
Identity = 47/103 (45.63%), Postives = 67/103 (65.05%), Query Frame = 0
Query:  112 ALDEEERLQSRRAECGVCLEKVKAKS-RFGILMGCKHVYCLNCIREWR-----EKSNDKECPQCRVPSNFVLPSLKLVTDPARKERLLLEYKHSLAKMPRQRF 208
            A+ EE RL S   ECG+C E + AK  RFG+L GC H +CL+C+R WR      K   ++CP CRV +NFV+PS ++VT P RK+ L+  Y+ +L+ +P + F
Sbjct:  258 AMGEEIRL-SADLECGICYENILAKGERFGLLSGCSHAFCLSCLRNWRGTAEQPKQTVRQCPVCRVETNFVIPSSRMVTKPERKKVLIDVYRKNLSAIPCRHF 359          
BLAST of mRNA_H-paniculata_contig6812.14730.1 vs. uniprot
Match: UPI000696F97B (probable E3 ubiquitin-protein ligase makorin-3 n=1 Tax=Chinchilla lanigera TaxID=34839 RepID=UPI000696F97B)

HSP 1 Score: 90.5 bits (223), Expect = 2.460e-18
Identity = 45/89 (50.56%), Postives = 52/89 (58.43%), Query Frame = 0
Query:  126 CGVCLEKVKAKS-----RFGILMGCKHVYCLNCIREWRE-----KSNDKECPQCRVPSNFVLPSLKLVTDPARKERLLLEYKHSLAKMP 204
            CG+C+E V  K      RFGIL GC H YC+ CIR WR      K   K CPQCRV SNFV+PS+  V     KE+L+ EYK SL   P
Sbjct:   77 CGICMEVVHEKKEPGQRRFGILYGCNHTYCITCIRTWRSGTQFAKRISKSCPQCRVSSNFVIPSIFWVEGKEEKEQLVQEYKESLRNKP 165          
BLAST of mRNA_H-paniculata_contig6812.14730.1 vs. uniprot
Match: A0A6P3FK62_OCTDE (RING-type E3 ubiquitin transferase n=1 Tax=Octodon degus TaxID=10160 RepID=A0A6P3FK62_OCTDE)

HSP 1 Score: 91.7 bits (226), Expect = 6.400e-18
Identity = 46/89 (51.69%), Postives = 55/89 (61.80%), Query Frame = 0
Query:  126 CGVCLEKVKAKS-----RFGILMGCKHVYCLNCIREWR-----EKSNDKECPQCRVPSNFVLPSLKLVTDPARKERLLLEYKHSLAKMP 204
            CG+C+E V  K+     RFGIL GCKH YCL+CIR WR     E    K CPQCRV S+FV+PS+  V     KE+L+ EYK SL   P
Sbjct:  313 CGICMEVVYEKNQPAQRRFGILYGCKHTYCLSCIRTWRSGTQFENRISKSCPQCRVSSSFVIPSVYWVEGEEEKEQLIQEYKESLRHKP 401          
BLAST of mRNA_H-paniculata_contig6812.14730.1 vs. uniprot
Match: A0A3P6Q5X8_9BILA (RING-type E3 ubiquitin transferase n=2 Tax=Gongylonema pulchrum TaxID=637853 RepID=A0A3P6Q5X8_9BILA)

HSP 1 Score: 89.7 bits (221), Expect = 6.590e-18
Identity = 46/103 (44.66%), Postives = 69/103 (66.99%), Query Frame = 0
Query:  107 AAKEAALDEEERLQSRRAE--CGVCLEKVKAKS-RFGILMGCKHVYCLNCIREWR-------EKSNDKECPQCRVPSNFVLPSLKLVTDPARKERLLLEYKHS 199
            AA EAA+ EE   ++R A+  CG+C+E ++ K+ RFGIL GCKH +CL+CIR+WR       EK   + CP+CR  S+FV+P+   V DPA K +L+ +++ +
Sbjct:   70 AAHEAAM-EEAFAEARSADKVCGICMENIREKNVRFGILEGCKHCFCLDCIRQWRSNQNHHFEKKTVRSCPECRTHSDFVIPAKYWVEDPADKSKLIAKFREN 171          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6812.14730.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G211_ECTSI2.970e-3747.90RING-type E3 ubiquitin transferase n=1 Tax=Ectocar... [more]
A0A6H5L7F8_9PHAE1.120e-3547.13RING-type E3 ubiquitin transferase n=1 Tax=Ectocar... [more]
X6NP21_RETFI5.680e-2336.17RING-type E3 ubiquitin transferase n=1 Tax=Reticul... [more]
A0A835Z5J0_9STRA1.910e-2249.02RING-type E3 ubiquitin transferase n=1 Tax=Tribone... [more]
A0A024G2Q9_9STRA3.900e-2044.76RING-type E3 ubiquitin transferase n=1 Tax=Albugo ... [more]
A0A3R7GYF0_9STRA1.340e-1845.63RING-type E3 ubiquitin transferase n=3 Tax=Phytoph... [more]
A0A6A3LV75_9STRA1.440e-1845.63RING-type E3 ubiquitin transferase n=2 Tax=Phytoph... [more]
UPI000696F97B2.460e-1850.56probable E3 ubiquitin-protein ligase makorin-3 n=1... [more]
A0A6P3FK62_OCTDE6.400e-1851.69RING-type E3 ubiquitin transferase n=1 Tax=Octodon... [more]
A0A3P6Q5X8_9BILA6.590e-1844.66RING-type E3 ubiquitin transferase n=2 Tax=Gongylo... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 33..58
e-value: 3.2E-6
score: 36.7
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 32..59
score: 15.967
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 126..169
e-value: 4.8E-7
score: 39.4
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 125..170
e-value: 2.1E-9
score: 37.5
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 126..170
score: 13.183
IPR041367E3 ligase, CCCH-type zinc fingerPFAMPF18044zf-CCCH_4coord: 36..57
e-value: 1.2E-9
score: 37.7
NoneNo IPR availableGENE3D4.10.1000.10coord: 21..86
e-value: 7.4E-9
score: 37.4
NoneNo IPR availablePANTHERPTHR11224:SF10IP09428P-RELATEDcoord: 108..210
NoneNo IPR availablePANTHERPTHR11224:SF10IP09428P-RELATEDcoord: 36..63
NoneNo IPR availablePANTHERPTHR11224MAKORIN-RELATEDcoord: 108..210
coord: 36..63
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 125..176
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 110..185
e-value: 6.0E-14
score: 53.0
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 145..154
IPR036855Zinc finger, CCCH-type superfamilySUPERFAMILY90229CCCH zinc fingercoord: 36..57

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6812contigH-paniculata_contig6812:530..3585 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6812.14730.1mRNA_H-paniculata_contig6812.14730.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig6812 320..5746 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig6812.14730.1 ID=prot_H-paniculata_contig6812.14730.1|Name=mRNA_H-paniculata_contig6812.14730.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=215bp
MEAAVQSALATPRSAPVSKAAAAAAATRSRGGSSGVPCTFFARGKCKYGE
SCRFSHEITQSRQPRSRGAGAEESKEDTDCGHYEGGDGGEGEEEEDWMEW
DQETQWAAKEAALDEEERLQSRRAECGVCLEKVKAKSRFGILMGCKHVYC
LNCIREWREKSNDKECPQCRVPSNFVLPSLKLVTDPARKERLLLEYKHSL
AKMPRQRFQFSVSS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
IPR001841Znf_RING
IPR041367Znf-CCCH_4
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
IPR036855Znf_CCCH_sf