prot_H-paniculata_contig6808.14726.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig6808.14726.1
Unique Nameprot_H-paniculata_contig6808.14726.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length260
Homology
BLAST of mRNA_H-paniculata_contig6808.14726.1 vs. uniprot
Match: D7FWC3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWC3_ECTSI)

HSP 1 Score: 233 bits (595), Expect = 1.510e-66
Identity = 133/252 (52.78%), Postives = 156/252 (61.90%), Query Frame = 0
Query:    7 KVWEIRASDMHIDPNAVLELFDLEAAVQTVAFDGTGKLLAAGSEDGMVAVWDVSTGSLVATFSGFVEQSPVISMHWTSNCSSSGSSSANSKYGGNDLSGGEGVRSGNSLRSLSSGCVGSACLLLASEAGDICRYSPLGARLGTLRLDSEVAAMDSDGRCTVVACKDASLRLLSSLDDGGFVQTLVRESGHEEDMTCLHVSASSSITSNPNHXXXXXXXXXXXXVLGQANDVVIVIGSEGGTVRVWDVVHRSR 258
            KVWEI  S + +DP  VLELFDLE   Q +  DG GK LAAG EDGMVAVWD++TG+L ATFSG  +QSP++S+ W                            +G+   S+  G  G ACL+LAS  G+I R SP+G  LG+LRLDSEV AMDSDGRCTVVAC+D SLRLL SL+DGGF QT+VRESGH  D+TCLHV A  S  S  N               G  N  VIV GS+GG VRVWDV+HR R
Sbjct: 1070 KVWEI--SSVEMDPVPVLELFDLETPAQALCIDGAGKALAAGGEDGMVAVWDIATGALSATFSGCADQSPIVSIRW--------------------------AETGDGAHSIPGG--GMACLVLASAVGEIWRVSPVGVPLGSLRLDSEVVAMDSDGRCTVVACRDGSLRLLGSLEDGGFTQTVVRESGHAGDITCLHVCAWDSGGSANN---------------GAGNAAVIVTGSDGGAVRVWDVMHRYR 1276          
BLAST of mRNA_H-paniculata_contig6808.14726.1 vs. uniprot
Match: A0A6H5KC57_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC57_9PHAE)

HSP 1 Score: 214 bits (545), Expect = 8.320e-60
Identity = 127/256 (49.61%), Postives = 153/256 (59.77%), Query Frame = 0
Query:    7 KVWEIRASDMHIDPNAVLELFDLEAAVQTVAFDGTGKLLAAGSEDGMVAVWDVSTGSLVATFSGFVEQSPVISMHWTSNCSSSGSSSANSKYGGNDLSGGEGVRSGNSLRSLSSGCVGSACLLLASEAGDICRYSPLGARLGTLRLDSEVAAMDSDGRCTVVACKDASLRLLSSLDDGGFVQTLV----RESGHEEDMTCLHVSASSSITSNPNHXXXXXXXXXXXXVLGQANDVVIVIGSEGGTVRVWDVVHRSR 258
            KVWEI + +M+  P  VLELFDLE   Q +  DG GK LAAG EDGMVAVWD++TG+L A FSG  +QSP++S+ W                            +G+   S+  G  G+ACL+LAS  G+I R SP+G  LG+LRLDSEV AMDSDGRCTVVAC+D SLRLL SL+DGGF Q  +    RESGH  D+TCL V A      N N+              G  N  VIV GS+GG VRVWDV+HR R
Sbjct: 1075 KVWEIGSVEMN--PVPVLELFDLETPAQALCIDGAGKALAAGGEDGMVAVWDIATGALSAAFSGCADQSPIVSIRW--------------------------AETGDGTHSIPGG--GTACLVLASAVGEIWRVSPVGVPLGSLRLDSEVVAMDSDGRCTVVACRDGSLRLLGSLEDGGFTQASLWFWLRESGHAGDITCLRVCAWDC-GGNANN--------------GAGNAAVIVTGSDGGAVRVWDVMHRYR 1285          
BLAST of mRNA_H-paniculata_contig6808.14726.1 vs. uniprot
Match: A0A835ZFP3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFP3_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 2.540e-15
Identity = 56/178 (31.46%), Postives = 91/178 (51.12%), Query Frame = 0
Query:    5 TTKVWEIRASDMHIDPNAVLELFDLEAAVQTVAFDGTGKLLAAGSEDGMVAVWDVSTGSLVATFSGFVEQSPVISMHWTSNCSSSGSSSANSKYGGNDLSGGEGVRSGNSLRSLSSGCVGSACLLLASEAGDICRYSPLGARLGTLRLDSEVAAMDSDGRCTVVACKDASLRLLSSLD 182
            T KVW ++  +  ++P   ++ FDLE  + +VA D +G+L+AAG+EDG VAVW+V +G++V ++      + V ++ W                          VR G++L           C++ A  +G ICR+S  G   G L L   +  M SDG  T+VAC + ++R+L+S D
Sbjct:  738 TVKVWGLQ--ETGLEPAPAMDFFDLETPIHSVAIDPSGRLVAAGAEDGKVAVWEVHSGAMVFSYEAPTAHA-VCAVLW--------------------------VRRGDAL-----------CVMTALTSGYICRHSESGTLEGCLDLSVGITTMLSDGYTTIVACANGNVRILASCD 875          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6808.14726.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FWC3_ECTSI1.510e-6652.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KC57_9PHAE8.320e-6049.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZFP3_9STRA2.540e-1531.46Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 183..252
e-value: 1.2
score: 16.4
coord: 19..58
e-value: 4.9E-4
score: 29.4
coord: 61..141
e-value: 490.0
score: 0.0
IPR001680WD40 repeatPFAMPF00400WD40coord: 194..252
e-value: 0.17
score: 12.8
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 26..67
score: 13.483
IPR024977Anaphase-promoting complex subunit 4, WD40 domainPFAMPF12894ANAPC4_WD40coord: 29..85
e-value: 8.6E-6
score: 26.0
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 4..98
e-value: 2.5E-12
score: 48.9
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 102..259
e-value: 4.2E-7
score: 31.0
NoneNo IPR availablePANTHERPTHR42968FAMILY NOT NAMEDcoord: 21..256
NoneNo IPR availablePANTHERPTHR42968:SF10IP10415Pcoord: 21..256
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 45..59
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 26..67
score: 12.499
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 8..253

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6808contigH-paniculata_contig6808:6693..8940 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6808.14726.1mRNA_H-paniculata_contig6808.14726.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig6808 5968..9685 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig6808.14726.1 ID=prot_H-paniculata_contig6808.14726.1|Name=mRNA_H-paniculata_contig6808.14726.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=260bp
MCILTTKVWEIRASDMHIDPNAVLELFDLEAAVQTVAFDGTGKLLAAGSE
DGMVAVWDVSTGSLVATFSGFVEQSPVISMHWTSNCSSSGSSSANSKYGG
NDLSGGEGVRSGNSLRSLSSGCVGSACLLLASEAGDICRYSPLGARLGTL
RLDSEVAAMDSDGRCTVVACKDASLRLLSSLDDGGFVQTLVRESGHEEDM
TCLHVSASSSITSNPNHSSSSNNNNSGGGVLGQANDVVIVIGSEGGTVRV
WDVVHRSRA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR024977Apc4_WD40_dom
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf