prot_H-paniculata_contig67223.14630.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig67223.14630.1
Unique Nameprot_H-paniculata_contig67223.14630.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length161
Homology
[Close]
BLAST of mRNA_H-paniculata_contig67223.14630.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 8.380e-41
Identity = 79/160 (49.38%), Postives = 110/160 (68.75%), Query Frame = 0 
Query:    1 MDVSGPKSVESTGGMRYSFLIRDDFSRKIWVYFGRHKSHTTRIFEQFLA----DSTPSVVRTVRSDGGGEFTG-PFSDLCRTRGVRQEYTPAERPEYNGVAERAIALVEQSAMAARIQATVLYV-VDVP--DRMWAESYRWTADALNRSATTANPE-KNP 151
            +D+ G K+V S GG  Y  +++DDF+R+ W+YF R+KS     F  FLA    D  PS+V TVRSD GGEF G  F+ +C    ++QE+TPA  P+YNGVAER + L+E++AMAARIQA VL+  V +P  D++WAE+  W  +ALN +A +ANP+ K+P
Sbjct:  333 VDLGGKKAVVSVGGKYYPMIVKDDFTRRAWIYFLRNKSDAASAFRSFLASVRADGIPSLVETVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEALNHTACSANPDSKSP 492
[Close]
BLAST of mRNA_H-paniculata_contig67223.14630.1 vs. uniprot
Match: A0A6H5J7U9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7U9_9PHAE)

HSP 1 Score: 143 bits (361), Expect = 6.280e-40
Identity = 75/156 (48.08%), Postives = 106/156 (67.95%), Query Frame = 0 
Query:    1 MDVSGPKSVESTGGMRYSFLIRDDFSRKIWVYFGRHKSHTTRIFEQFLADS----TPSVVRTVRSDGGGEF-TGPFSDLCRTRGVRQEYTPAERPEYNGVAERAIALVEQSAMAARIQATVLY--VVDVPDRMWAESYRWTADALNRSATTANPEK 149
            +D+SG   V+S GG  Y+ +++DD++R   VYF +HKS     FE++LA++     PS V  VRSD GGEF  G F  +CR   ++QE+TPA  PEY+GVAERA+ L+E +A+AARIQA  LY    + P  +WAE+  W+ +ALN ++TT+NPEK
Sbjct:   39 VDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYDGVAERALGLIEDAALAARIQAPTLYPGAPNYPS-LWAEAIAWSCNALNCTSTTSNPEK 193
[Close]
BLAST of mRNA_H-paniculata_contig67223.14630.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 9.840e-40
Identity = 77/160 (48.12%), Postives = 108/160 (67.50%), Query Frame = 0 
Query:    1 MDVSGPKSVESTGGMRYSFLIRDDFSRKIWVYFGRHKSHTTRIFEQFLA----DSTPSVVRTVRSDGGGEFTG-PFSDLCRTRGVRQEYTPAERPEYNGVAERAIALVEQSAMAARIQATVLYV-VDVP--DRMWAESYRWTADALNRSATTANPE-KNP 151
            +D+ G K V S GG  Y  +++DDF+R+ W+YF +HKS     F  FLA    D  PS+V  VRSD GGEF G  F+ +C    ++QE+TPA  P+YNGVAER + L+E++AMAARIQA VL+  V +P  D++WAE+  W  +A+N +A +ANP+ K+P
Sbjct:  729 VDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRADGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSP 888
[Close]
BLAST of mRNA_H-paniculata_contig67223.14630.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 9.890e-40
Identity = 77/160 (48.12%), Postives = 108/160 (67.50%), Query Frame = 0 
Query:    1 MDVSGPKSVESTGGMRYSFLIRDDFSRKIWVYFGRHKSHTTRIFEQFLA----DSTPSVVRTVRSDGGGEFTG-PFSDLCRTRGVRQEYTPAERPEYNGVAERAIALVEQSAMAARIQATVLYV-VDVP--DRMWAESYRWTADALNRSATTANPE-KNP 151
            +D+ G K V S GG  Y  +++DDF+R+ W+YF +HKS     F  FLA    D  PS+V  VRSD GGEF G  F+ +C    ++QE+TPA  P+YNGVAER + L+E++AMAARIQA VL+  V +P  D++WAE+  W  +A+N +A +ANP+ K+P
Sbjct:  436 VDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRADGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSP 595
[Close]
BLAST of mRNA_H-paniculata_contig67223.14630.1 vs. uniprot
Match: A0A6H5K622_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K622_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 2.480e-39
Identity = 78/160 (48.75%), Postives = 107/160 (66.88%), Query Frame = 0 
Query:    1 MDVSGPKSVESTGGMRYSFLIRDDFSRKIWVYFGRHKSHTTRIFEQFLA----DSTPSVVRTVRSDGGGEFTG-PFSDLCRTRGVRQEYTPAERPEYNGVAERAIALVEQSAMAARIQATVLYV-VDVP--DRMWAESYRWTADALNRSATTANPE-KNP 151
            +D+ G K V S GG  Y  +++DDF+R+ W+YF R KS     F  FLA    D  PS++  VRSD GGEF G  F+ +C    ++QE+TPA  PE+NGVAER + L+E++AMAARIQA VL+  V +P  DR+WAE+  W  +ALN +A +ANP+ K+P
Sbjct:  480 VDLGGKKGVASIGGKHYPMILKDDFTRRAWMYFLRSKSDAGSAFRSFLANVRADGIPSLIEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPEFNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEALNHTACSANPDSKSP 639
[Close]
BLAST of mRNA_H-paniculata_contig67223.14630.1 vs. uniprot
Match: A0A6H5KVR5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR5_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 7.990e-39
Identity = 72/155 (46.45%), Postives = 102/155 (65.81%), Query Frame = 0 
Query:    2 DVSGPKSVESTGGMRYSFLIRDDFSRKIWVYFGRHKSHTTRIFEQFLA----DSTPSVVRTVRSDGGGEFTG-PFSDLCRTRGVRQEYTPAERPEYNGVAERAIALVEQSAMAARIQATVLYV-VDVP--DRMWAESYRWTADALNRSATTANPE 148
            D+ G K + S GG  Y  +++DDF+R  W+YF R+KS     F  FLA    +  PS V  VRSD GG+F G  F+ +C    ++QE+TPA  P+YNGVAER + L+E++AMAARIQA VL+  V +P  D++WAE+  W  +A+N +A +ANP+
Sbjct:   98 DLGGRKDIASVGGKHYPIIVKDDFTRHTWMYFLRNKSDAGSAFRTFLASVRANGVPSFVEIVRSDNGGKFFGGDFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPD 252
[Close]
BLAST of mRNA_H-paniculata_contig67223.14630.1 vs. uniprot
Match: A0A6H5K2M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M6_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 1.100e-38
Identity = 77/160 (48.12%), Postives = 106/160 (66.25%), Query Frame = 0 
Query:    1 MDVSGPKSVESTGGMRYSFLIRDDFSRKIWVYFGRHKSHTTRIFEQFLA----DSTPSVVRTVRSDGGGEFTG-PFSDLCRTRGVRQEYTPAERPEYNGVAERAIALVEQSAMAARIQATVLYV-VDVP--DRMWAESYRWTADALNRSATTANPE-KNP 151
            +D+ G K V S GG  Y  +++DDF+R+ W+YF + KS     F  FLA    D  PS+V  VRSD GGEF G  F+ +C    ++QE+TPA  P+YNGVAER + L+E +AMAARIQA VL+  V +P  DR+WAE+  W  +A+N +A +ANP+ K+P
Sbjct:  635 VDLGGRKDVASVGGKHYPMIVKDDFTRRTWMYFLKSKSDAASAFRSFLASVRADGIPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEAAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEAINHTACSANPDSKSP 794
[Close]
BLAST of mRNA_H-paniculata_contig67223.14630.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 1.180e-38
Identity = 77/160 (48.12%), Postives = 107/160 (66.88%), Query Frame = 0 
Query:    1 MDVSGPKSVESTGGMRYSFLIRDDFSRKIWVYFGRHKSHTTRIFEQFLA----DSTPSVVRTVRSDGGGEFTG-PFSDLCRTRGVRQEYTPAERPEYNGVAERAIALVEQSAMAARIQATVLYV-VDVP--DRMWAESYRWTADALNRSATTANPE-KNP 151
            +++ G K V S GG  Y  +++DDF+R+ W+YF R KS     F  FLA    D  PS++  VRSD GGEF G  F+ +C    ++QE+TPA  PE+NGVAER + L+E++AMAARIQA VL+  V +P  DR+WAE+  W  +ALN +A +ANP+ K+P
Sbjct:  456 VNLGGKKGVASIGGKHYPMILKDDFTRRAWMYFLRSKSDAGSAFRSFLANVRADGIPSLIEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPEFNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEALNHTACSANPDSKSP 615
[Close]
BLAST of mRNA_H-paniculata_contig67223.14630.1 vs. uniprot
Match: A0A6H5J594_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J594_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 5.340e-38
Identity = 77/160 (48.12%), Postives = 105/160 (65.62%), Query Frame = 0 
Query:    1 MDVSGPKSVESTGGMRYSFLIRDDFSRKIWVYFGRHKSHTTRIFEQF----LADSTPSVVRTVRSD-GGGEFTGPFSDLCRTRGVRQEYTPAERPEYNGVAERAIALVEQSAMAARIQATVLYV-VDVP--DRMWAESYRWTADALNRSATTANPE-KNP 151
            +D+ G K V S GG  Y  +++DDF+R+ W+YF R KS     F  F     AD  PS++  VRSD GGG F G F+ +C    ++QE+TPA  PE+NGVAER + L E++AMAARIQA VL+  V +P  DR+WAE+  W  +ALN +A +ANP+ K+P
Sbjct:  130 VDLGGKKGVASIGGKHYPMILKDDFTRRAWMYFLRSKSDAGSAFRSFHANVRADGIPSLIEIVRSDNGGGFFGGEFASVCNELVIKQEFTPAHSPEFNGVAERGLGLTEEAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEALNHTACSANPDSKSP 289
[Close]
BLAST of mRNA_H-paniculata_contig67223.14630.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 7.070e-38
Identity = 74/159 (46.54%), Postives = 104/159 (65.41%), Query Frame = 0 
Query:    1 MDVSGPKSVESTGGMRYSFLIRDDFSRKIWVYFGRHKSHTTRIFEQFLA----DSTPSVVRTVRSDGGGEFTG-PFSDLCRTRGVRQEYTPAERPEYNGVAERAIALVEQSAMAARIQATVLYV-VDVP--DRMWAESYRWTADALNRSATTANPEKNP 151
            +D+ G K   S GG  Y  +++DDF+R+ W+YF R+KS     F  FLA    +  PS V  VRSD GGEF G  F+ +C    ++QE+TPA  P+YNGVAER + L+E++AMAARIQA VL+  V +P  D++WAE+  W  +A+N +A +ANP+  P
Sbjct:  195 VDLGGRKDSASVGGKHYPMIVKDDFTRRTWMYFLRNKSDAGSAFRTFLASVRANGVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMP 353
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig67223.14630.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JB16_9PHAE8.380e-4149.38Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5J7U9_9PHAE6.280e-4048.08Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JBA7_9PHAE9.840e-4048.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZH7_9PHAE9.890e-4048.13Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K622_9PHAE2.480e-3948.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVR5_9PHAE7.990e-3946.45Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K2M6_9PHAE1.100e-3848.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH25_9PHAE1.180e-3848.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J594_9PHAE5.340e-3848.13Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L3Y0_9PHAE7.070e-3846.54Integrase catalytic domain-containing protein n=1 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..153
e-value: 8.9E-17
score: 62.9
IPR001584Integrase, catalytic corePFAMPF00665rvecoord: 8..105
e-value: 2.3E-13
score: 50.4
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 1..159
score: 14.891
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 1..143
NoneNo IPR availablePANTHERPTHR11439:SF284coord: 1..143
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 1..145

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig67223contigH-paniculata_contig67223:228..710 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig67223.14630.1mRNA_H-paniculata_contig67223.14630.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig67223 228..725 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig67223.14630.1 ID=prot_H-paniculata_contig67223.14630.1|Name=mRNA_H-paniculata_contig67223.14630.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=161bp
MDVSGPKSVESTGGMRYSFLIRDDFSRKIWVYFGRHKSHTTRIFEQFLAD
STPSVVRTVRSDGGGEFTGPFSDLCRTRGVRQEYTPAERPEYNGVAERAI
ALVEQSAMAARIQATVLYVVDVPDRMWAESYRWTADALNRSATTANPEKN
PRMRCFMVKF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR001584Integrase_cat-core
IPR039537Retrotran_Ty1/copia-like
IPR012337RNaseH-like_sf